RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 SATB1Q01826 763 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 G2E3Q7L622 706 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 NDUFAF2Q8N183 169 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 THEM5Q8N1Q8 247 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 ZKSCAN4Q969J2 545 aaPredicted RBP8.39□□□□□ -1.07
VPS13D-211ENST00000543710 MTBPQ96DY7 904 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 RILPQ96NA2 401 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 KCND2Q9NZV8 630 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.39□□□□□ -1.07
VPS13D-211ENST00000543710 FNDC3AQ9Y2H6 1198 aaKnown RBP8.39□□□□□ -1.07
VPS13D-211ENST00000543710 PNPLA6Q8IY17 1366 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 TNKSO95271 1327 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 ABCB11O95342 1321 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 CABYRO75952 493 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 CALB1P05937 261 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 ZFXP17010 805 aaPredicted RBP8.39□□□□□ -1.07
VPS13D-211ENST00000543710 MSH2P43246 934 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 MAGEA9P43362 315 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 EPHA10Q5JZY3 1008 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 FAM102BQ5T8I3 360 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 ADAT2Q7Z6V5 191 aaKnown RBP8.39□□□□□ -1.07
VPS13D-211ENST00000543710 TGFBRAP1Q8WUH2 860 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 INTS9Q9NV88 658 aaKnown RBP8.39□□□□□ -1.07
VPS13D-211ENST00000543710 ZBTB1Q9Y2K1 713 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 RRP15Q9Y3B9 282 aaKnown RBP8.39□□□□□ -1.07
VPS13D-211ENST00000543710 ERBB3P21860 1342 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 IRS2Q9Y4H2 1338 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 TBXAS1P24557 533 aaPredicted RBP8.39□□□□□ -1.07
VPS13D-211ENST00000543710 TRADDQ15628 312 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 MAP10Q9P2G4 905 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 FAF1Q9UNN5 650 aaPredicted RBP8.39□□□□□ -1.07
VPS13D-211ENST00000543710 PNMA6FA0A0J9YX94 578 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 PNMA6EA0A0J9YXQ4 647 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 UBE2Q2LH0YL09 131 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 ASAP2O43150 1006 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 HEXIM1O94992 359 aaKnown RBP8.39□□□□□ -1.07
VPS13D-211ENST00000543710 APOA4P06727 396 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 SRGAP2CP0DJJ0 459 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 SLC1A1P43005 524 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 TKFCQ3LXA3 575 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 KLC3Q6P597 504 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 UNC13DQ70J99 1090 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 PLEKHH3Q7Z736 793 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 LINC00301Q8NCQ3 95 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 OSBP2Q969R2 916 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 MED10Q9BTT4 135 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 WNT8AQ9H1J5 351 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 ANAPC5Q9UJX4 755 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 PPRC1Q5VV67 1664 aaKnown RBP8.39□□□□□ -1.07
VPS13D-211ENST00000543710 NRXN1Q9ULB1 1477 aa8.39□□□□□ -1.07
VPS13D-211ENST00000543710 KPNA7A9QM74 516 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 CTIFO43310 598 aaKnown RBP8.38□□□□□ -1.07
VPS13D-211ENST00000543710 MFAP3LO75121 409 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 NDUFA8P51970 172 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 RBL2Q08999 1139 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 FAM178BQ8IXR5 827 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 TERB1Q8NA31 727 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 SLAIN1Q8ND83 568 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 MAP3K14Q99558 947 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 CNPY3Q9BT09 278 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 YY1AP1Q9H869 796 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 NHEJ1Q9H9Q4 299 aaPredicted RBP8.38□□□□□ -1.07
VPS13D-211ENST00000543710 MAD1L1Q9Y6D9 718 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 PI4K2BG5E9Z4 385 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 CHUKO15111 745 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 SASH1O94885 1247 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 TJP3O95049 919 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 CIITAP33076 1130 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 SERPINB4P48594 390 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 RIBC1Q8N443 379 aaPredicted RBP8.38□□□□□ -1.07
VPS13D-211ENST00000543710 SAMD3Q8N6K7 520 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 PI4K2BQ8TCG2 481 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 DDX27Q96GQ7 796 aaKnown RBP8.38□□□□□ -1.07
VPS13D-211ENST00000543710 ENTPD7Q9NQZ7 604 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 NSMCE4AQ9NXX6 385 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 PSD3Q9NYI0 1048 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 PKD2L1Q9P0L9 805 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 BAG5Q9UL15 447 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 A0A1W2PQJ5 194 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 H2AFYO75367 372 aaKnown RBP8.38□□□□□ -1.07
VPS13D-211ENST00000543710 FKBP3Q00688 224 aaKnown RBP8.38□□□□□ -1.07
VPS13D-211ENST00000543710 NFX1Q12986 1120 aaKnown RBP8.38□□□□□ -1.07
VPS13D-211ENST00000543710 PNMA1Q8ND90 353 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 APBB2Q92870 758 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 ANKRD27Q96NW4 1050 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 HACD3Q9P035 362 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 GMEB2Q9UKD1 530 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 RFX6Q8HWS3 928 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 MROH2AA6NES4 1674 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 C1orf167Q5SNV9 1468 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 FRMD3A2A2Y4 597 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 TMEM232C9JQI7 657 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 CPP00450 1065 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 TNNI1P19237 187 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 POLR2FP61218 127 aaKnown RBP8.38□□□□□ -1.07
VPS13D-211ENST00000543710 MYO1EQ12965 1108 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 RASGRF1Q13972 1273 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 KCNB1Q14721 858 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 ARL13BQ3SXY8 428 aa8.38□□□□□ -1.07
VPS13D-211ENST00000543710 RSBN1LQ6PCB5 846 aaPredicted RBP8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms