RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 PTF1AQ7RTS3 328 aa20.09■□□□□ 0.81
USP48-204ENST00000400301 TNFRSF25Q93038 417 aa20.09■□□□□ 0.81
USP48-204ENST00000400301 VIPAS39Q9H9C1 493 aa20.09■□□□□ 0.81
USP48-204ENST00000400301 LRRIQ4A6NIV6 560 aa20.09■□□□□ 0.81
USP48-204ENST00000400301 INTS8Q75QN2 995 aaKnown RBP20.09■□□□□ 0.81
USP48-204ENST00000400301 CACNA2D3Q8IZS8 1091 aa20.09■□□□□ 0.81
USP48-204ENST00000400301 ANKZF1Q9H8Y5 726 aa20.09■□□□□ 0.81
USP48-204ENST00000400301 KCNG1Q9UIX4 513 aa20.09■□□□□ 0.81
USP48-204ENST00000400301 PLAAQ9Y263 795 aa20.09■□□□□ 0.81
USP48-204ENST00000400301 MYO1FO00160 1098 aa20.08■□□□□ 0.81
USP48-204ENST00000400301 FGRP09769 529 aa20.08■□□□□ 0.81
USP48-204ENST00000400301 IL1R1P14778 569 aa20.08■□□□□ 0.81
USP48-204ENST00000400301 CYP11B2P19099 503 aa20.08■□□□□ 0.81
USP48-204ENST00000400301 ATP6V0A1Q93050 837 aa20.08■□□□□ 0.81
USP48-204ENST00000400301 LXNQ9BS40 222 aa20.08■□□□□ 0.81
USP48-204ENST00000400301 RBM12Q9NTZ6 932 aaKnown RBP20.08■□□□□ 0.81
USP48-204ENST00000400301 MYO1CO00159 1063 aa20.08■□□□□ 0.81
USP48-204ENST00000400301 KLRC1P26715 233 aa20.08■□□□□ 0.81
USP48-204ENST00000400301 NSFP46459 744 aaKnown RBP20.08■□□□□ 0.81
USP48-204ENST00000400301 PTK2Q05397 1052 aa20.08■□□□□ 0.81
USP48-204ENST00000400301 CEP55Q53EZ4 464 aa20.08■□□□□ 0.81
USP48-204ENST00000400301 TMEM139Q8IV31 216 aa20.08■□□□□ 0.81
USP48-204ENST00000400301 FMO2Q99518 471 aa20.08■□□□□ 0.81
USP48-204ENST00000400301 EHD2Q9NZN4 543 aa20.08■□□□□ 0.81
USP48-204ENST00000400301 ARHGAP20Q9P2F6 1191 aa20.08■□□□□ 0.81
USP48-204ENST00000400301 SEL1LQ9UBV2 794 aa20.08■□□□□ 0.81
USP48-204ENST00000400301 SEPT9Q9UHD8 586 aaPredicted RBP20.08■□□□□ 0.81
USP48-204ENST00000400301 TBX3O15119 743 aa20.08■□□□□ 0.8
USP48-204ENST00000400301 RPA1P27694 616 aa20.08■□□□□ 0.8
USP48-204ENST00000400301 ADCY8P40145 1251 aa20.08■□□□□ 0.8
USP48-204ENST00000400301 CATSPER3Q86XQ3 398 aa20.08■□□□□ 0.8
USP48-204ENST00000400301 PASKQ96RG2 1323 aa20.08■□□□□ 0.8
USP48-204ENST00000400301 POLGP54098 1239 aaPredicted RBP20.08■□□□□ 0.8
USP48-204ENST00000400301 PRM3Q9NNZ6 103 aa20.08■□□□□ 0.8
USP48-204ENST00000400301 NOP56O00567 594 aaKnown RBP20.07■□□□□ 0.8
USP48-204ENST00000400301 DR1Q01658 176 aa20.07■□□□□ 0.8
USP48-204ENST00000400301 GPATCH11Q8N954 259 aa20.07■□□□□ 0.8
USP48-204ENST00000400301 ANKRD42Q8N9B4 389 aa20.07■□□□□ 0.8
USP48-204ENST00000400301 NUDT12Q9BQG2 462 aa20.07■□□□□ 0.8
USP48-204ENST00000400301 PLCD4Q9BRC7 762 aa20.07■□□□□ 0.8
USP48-204ENST00000400301 IQCGQ9H095 443 aaKnown RBP20.07■□□□□ 0.8
USP48-204ENST00000400301 PRR12Q9ULL5 1215 aa20.07■□□□□ 0.8
USP48-204ENST00000400301 NOVA2Q9UNW9 492 aaKnown RBP20.07■□□□□ 0.8
USP48-204ENST00000400301 GRID2IPA4D2P6 1211 aa20.07■□□□□ 0.8
USP48-204ENST00000400301 RGL2O15211 777 aa20.07■□□□□ 0.8
USP48-204ENST00000400301 PAPD7Q5XG87 772 aaKnown RBP20.07■□□□□ 0.8
USP48-204ENST00000400301 XXYLT1Q8NBI6 393 aa20.07■□□□□ 0.8
USP48-204ENST00000400301 PNMA5Q96PV4 448 aa20.07■□□□□ 0.8
USP48-204ENST00000400301 AZI2Q9H6S1 392 aa20.07■□□□□ 0.8
USP48-204ENST00000400301 RHOT2Q8IXI1 618 aa20.07■□□□□ 0.8
USP48-204ENST00000400301 DNAI2Q9GZS0 605 aa20.07■□□□□ 0.8
USP48-204ENST00000400301 AS3MTQ9HBK9 375 aa20.07■□□□□ 0.8
USP48-204ENST00000400301 HPCAL4Q9UM19 191 aa20.07■□□□□ 0.8
USP48-204ENST00000400301 PITPNM2Q9BZ72 1349 aa20.06■□□□□ 0.8
USP48-204ENST00000400301 GKAP1Q5VSY0 366 aaPredicted RBP20.06■□□□□ 0.8
USP48-204ENST00000400301 DCAF15Q66K64 600 aa20.06■□□□□ 0.8
USP48-204ENST00000400301 ANKFY1Q9P2R3 1169 aa20.06■□□□□ 0.8
USP48-204ENST00000400301 PNMA2Q9UL42 364 aa20.06■□□□□ 0.8
USP48-204ENST00000400301 CHRNA5P30532 468 aa20.06■□□□□ 0.8
USP48-204ENST00000400301 ALCAMQ13740 583 aa20.06■□□□□ 0.8
USP48-204ENST00000400301 SLC17A8Q8NDX2 589 aa20.06■□□□□ 0.8
USP48-204ENST00000400301 INTS2Q9H0H0 1204 aaKnown RBP20.06■□□□□ 0.8
USP48-204ENST00000400301 HERC5Q9UII4 1024 aaKnown RBP20.06■□□□□ 0.8
USP48-204ENST00000400301 MED24O75448 989 aa20.06■□□□□ 0.8
USP48-204ENST00000400301 SASH3O75995 380 aa20.06■□□□□ 0.8
USP48-204ENST00000400301 IFNB1P01574 187 aa20.06■□□□□ 0.8
USP48-204ENST00000400301 IFT88Q13099 833 aa20.06■□□□□ 0.8
USP48-204ENST00000400301 GLG1Q92896 1179 aa20.06■□□□□ 0.8
USP48-204ENST00000400301 H0YCG3 227 aa20.06■□□□□ 0.8
USP48-204ENST00000400301 MAPK4P31152 587 aa20.06■□□□□ 0.8
USP48-204ENST00000400301 ZNF211Q13398 564 aaPredicted RBP20.06■□□□□ 0.8
USP48-204ENST00000400301 MTMR1Q13613 665 aa20.06■□□□□ 0.8
USP48-204ENST00000400301 ZRSR2Q15696 482 aaKnown RBP20.06■□□□□ 0.8
USP48-204ENST00000400301 WDR93Q6P2C0 686 aa20.06■□□□□ 0.8
USP48-204ENST00000400301 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.06■□□□□ 0.8
USP48-204ENST00000400301 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.06■□□□□ 0.81e-7■■□□□ 11.4
USP48-204ENST00000400301 BLOC1S4Q9NUP1 217 aa20.06■□□□□ 0.8
USP48-204ENST00000400301 KCPQ6ZWJ8 1503 aa20.05■□□□□ 0.8
USP48-204ENST00000400301 KLRC4O43908 158 aa20.05■□□□□ 0.8
USP48-204ENST00000400301 ZNF746Q6NUN9 644 aaPredicted RBP20.05■□□□□ 0.8
USP48-204ENST00000400301 SPATS2Q86XZ4 545 aaKnown RBP20.05■□□□□ 0.8
USP48-204ENST00000400301 TTLL6Q8N841 843 aa20.05■□□□□ 0.8
USP48-204ENST00000400301 HOMER3Q9NSC5 361 aa20.05■□□□□ 0.8
USP48-204ENST00000400301 A0A087X0T9 212 aa20.05■□□□□ 0.8
USP48-204ENST00000400301 HMGB1P1B2RPK0 211 aaPredicted RBP20.05■□□□□ 0.8
USP48-204ENST00000400301 KRT19P08727 400 aa20.05■□□□□ 0.8
USP48-204ENST00000400301 FAM228BP0C875 321 aa20.05■□□□□ 0.8
USP48-204ENST00000400301 HSPA6P17066 643 aa20.05■□□□□ 0.8
USP48-204ENST00000400301 SNX1Q13596 522 aa20.05■□□□□ 0.8
USP48-204ENST00000400301 PHLDB2Q86SQ0 1253 aa20.05■□□□□ 0.8
USP48-204ENST00000400301 NOC2LQ9Y3T9 749 aaKnown RBP20.05■□□□□ 0.8
USP48-204ENST00000400301 EZRP15311 586 aaKnown RBP20.05■□□□□ 0.8
USP48-204ENST00000400301 LDHDQ86WU2 507 aa20.05■□□□□ 0.8
USP48-204ENST00000400301 ANKRD35Q8N283 1001 aa20.05■□□□□ 0.8
USP48-204ENST00000400301 TAF1DQ9H5J8 278 aaPredicted RBP20.05■□□□□ 0.8
USP48-204ENST00000400301 RAVER2Q9HCJ3 691 aaKnown RBP20.05■□□□□ 0.8
USP48-204ENST00000400301 SNX24Q9Y343 169 aa20.05■□□□□ 0.8
USP48-204ENST00000400301 SOX5P35711 763 aa20.04■□□□□ 0.8
USP48-204ENST00000400301 CDK17Q00537 523 aa20.04■□□□□ 0.8
USP48-204ENST00000400301 SH2D3AQ9BRG2 576 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms