RNA–Protein interactions for RNA: ENST00000398417.6

SMAD4-202, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,495 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-202ENST00000398417 RIOX1Q9H6W3 641 aa5.38□□□□□ -1.55
SMAD4-202ENST00000398417 ZFYVE1Q9HBF4 777 aa5.38□□□□□ -1.55
SMAD4-202ENST00000398417 SYF2O95926 243 aaKnown RBP5.37□□□□□ -1.55
SMAD4-202ENST00000398417 NR3C1P04150 777 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 FECHP22830 423 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 COG2Q14746 738 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 PPP1R18Q6NYC8 613 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 SRLQ86TD4 932 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 ANKRD42Q8N9B4 389 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 CCDC26Q8TAB7 109 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 CAPN7Q9Y6W3 813 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 PPIP5K2O43314 1243 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 GAS7O60861 476 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 MESDQ14696 234 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 ODR4Q5SWX8 454 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 CCDC121Q6ZUS5 278 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 RUSC1Q9BVN2 902 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 QTRT2Q9H974 415 aaKnown RBP5.37□□□□□ -1.55
SMAD4-202ENST00000398417 USTQ9Y2C2 406 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 AFF2P51816 1311 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 ESYT2A0FGR8 921 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 SPOPO43791 374 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 PPFIA4O75335 1185 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 HARSP12081 509 aaKnown RBP5.37□□□□□ -1.55
SMAD4-202ENST00000398417 KRT5P13647 590 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 GTF2A1P52655 376 aaPredicted RBP5.37□□□□□ -1.55
SMAD4-202ENST00000398417 KNOP1Q1ED39 458 aaKnown RBP5.37□□□□□ -1.55
SMAD4-202ENST00000398417 SEL1L2Q5TEA6 688 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 CENPPQ6IPU0 288 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 RNF168Q8IYW5 571 aaPredicted RBP5.37□□□□□ -1.55
SMAD4-202ENST00000398417 DNAJC17Q9NVM6 304 aaKnown RBP5.37□□□□□ -1.55
SMAD4-202ENST00000398417 STK25O00506 426 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 ECE2O60344 883 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 TLR2O60603 784 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 ADCY1Q08828 1119 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 DLGAP5Q15398 846 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 TRIP13Q15645 432 aaPredicted RBP5.37□□□□□ -1.55
SMAD4-202ENST00000398417 ZNF577Q9BSK1 485 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 SUDS3Q9H7L9 328 aaPredicted RBP5.37□□□□□ -1.55
SMAD4-202ENST00000398417 METTL14Q9HCE5 456 aaKnown RBP5.37□□□□□ -1.55
SMAD4-202ENST00000398417 UBE2TQ9NPD8 197 aaPredicted RBP5.37□□□□□ -1.55
SMAD4-202ENST00000398417 MKRN1Q9UHC7 482 aaKnown RBP5.37□□□□□ -1.55
SMAD4-202ENST00000398417 SALL4Q9UJQ4 1053 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 ANKRD62A6NC57 917 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 CCDC85CA6NKD9 419 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 FAM153BP0C7A2 387 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 FAM153CQ494X1 144 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 TAB3Q8N5C8 712 aaPredicted RBP5.37□□□□□ -1.55
SMAD4-202ENST00000398417 GPATCH11Q8N954 259 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 RAVER2Q9HCJ3 691 aaKnown RBP5.37□□□□□ -1.55
SMAD4-202ENST00000398417 STIM2Q9P246 746 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 FAM153AQ9UHL3 310 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 HGSO14964 777 aaPredicted RBP5.37□□□□□ -1.55
SMAD4-202ENST00000398417 FLOT1O75955 427 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 IL1R1P14778 569 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 IRX3P78415 501 aaPredicted RBP5.37□□□□□ -1.55
SMAD4-202ENST00000398417 AP3B2Q13367 1082 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 SNX1Q13596 522 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 SCFD1Q8WVM8 642 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 SH2D3AQ9BRG2 576 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 KCNK9Q9NPC2 374 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 PICK1Q9NRD5 415 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 TYW1Q9NV66 732 aaKnown RBP5.37□□□□□ -1.55
SMAD4-202ENST00000398417 FRMD4BQ9Y2L6 1034 aa5.37□□□□□ -1.55
SMAD4-202ENST00000398417 H0YIN7 160 aa5.36□□□□□ -1.55
SMAD4-202ENST00000398417 DDR1Q08345 913 aa5.36□□□□□ -1.55
SMAD4-202ENST00000398417 AOC3Q16853 763 aa5.36□□□□□ -1.55
SMAD4-202ENST00000398417 ZNF571Q7Z3V5 609 aaPredicted RBP5.36□□□□□ -1.55
SMAD4-202ENST00000398417 CATSPER3Q86XQ3 398 aa5.36□□□□□ -1.55
SMAD4-202ENST00000398417 RPUSD2Q8IZ73 545 aaKnown RBP5.36□□□□□ -1.55
SMAD4-202ENST00000398417 EIF2AK1Q9BQI3 630 aaKnown RBP5.36□□□□□ -1.55
SMAD4-202ENST00000398417 NDUFB10O96000 172 aa5.36□□□□□ -1.55
SMAD4-202ENST00000398417 PLTPP55058 493 aa5.36□□□□□ -1.55
SMAD4-202ENST00000398417 DHX9Q08211 1270 aaKnown RBP5.36□□□□□ -1.55
SMAD4-202ENST00000398417 GIT2Q14161 759 aa5.36□□□□□ -1.55
SMAD4-202ENST00000398417 KRT71Q3SY84 523 aa5.36□□□□□ -1.55
SMAD4-202ENST00000398417 XKR9Q5GH70 373 aa5.36□□□□□ -1.55
SMAD4-202ENST00000398417 LRCH2Q5VUJ6 765 aa5.36□□□□□ -1.55
SMAD4-202ENST00000398417 LRRC55Q6ZSA7 311 aa5.36□□□□□ -1.55
SMAD4-202ENST00000398417 CCDC127Q96BQ5 260 aa5.36□□□□□ -1.55
SMAD4-202ENST00000398417 FAM169AQ9Y6X4 670 aa5.36□□□□□ -1.55
SMAD4-202ENST00000398417 GOLGA4Q13439 2230 aaKnown RBP5.36□□□□□ -1.55
SMAD4-202ENST00000398417 KCPQ6ZWJ8 1503 aa5.36□□□□□ -1.55
SMAD4-202ENST00000398417 A0A087X0T9 212 aa5.36□□□□□ -1.55
SMAD4-202ENST00000398417 FAM228BP0C875 321 aa5.36□□□□□ -1.55
SMAD4-202ENST00000398417 ALDH1B1P30837 517 aa5.36□□□□□ -1.55
SMAD4-202ENST00000398417 WDR75Q8IWA0 830 aaKnown RBP5.36□□□□□ -1.55
SMAD4-202ENST00000398417 ARFGAP2Q8N6H7 521 aa5.36□□□□□ -1.55
SMAD4-202ENST00000398417 GLT8D2Q9H1C3 349 aa5.36□□□□□ -1.55
SMAD4-202ENST00000398417 PSD3Q9NYI0 1048 aa5.36□□□□□ -1.55
SMAD4-202ENST00000398417 TARSL2A2RTX5 802 aaKnown RBP5.36□□□□□ -1.55
SMAD4-202ENST00000398417 SLC16A4O15374 487 aa5.36□□□□□ -1.55
SMAD4-202ENST00000398417 MSH4O15457 936 aa5.36□□□□□ -1.55
SMAD4-202ENST00000398417 ECE1P42892 770 aa5.36□□□□□ -1.55
SMAD4-202ENST00000398417 SLCO1A2P46721 670 aa5.36□□□□□ -1.55
SMAD4-202ENST00000398417 FIGNQ5HY92 759 aa5.36□□□□□ -1.55
SMAD4-202ENST00000398417 ZNF746Q6NUN9 644 aaPredicted RBP5.36□□□□□ -1.55
SMAD4-202ENST00000398417 CRAMP1Q96RY5 1269 aa5.36□□□□□ -1.55
SMAD4-202ENST00000398417 CSRNP1Q96S65 589 aa5.36□□□□□ -1.55
SMAD4-202ENST00000398417 PAIP2Q9BPZ3 127 aaKnown RBP5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 2219.1 ms