RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 ZNF648Q5T619 568 aaPredicted RBP6.38□□□□□ -1.39
LINC00560-201ENST00000564593 BROXQ5VW32 411 aa6.38□□□□□ -1.39
LINC00560-201ENST00000564593 ARRDC4Q8NCT1 418 aa6.38□□□□□ -1.39
LINC00560-201ENST00000564593 TRIM8Q9BZR9 551 aa6.38□□□□□ -1.39
LINC00560-201ENST00000564593 CCDC8Q9H0W5 538 aaPredicted RBP6.38□□□□□ -1.39
LINC00560-201ENST00000564593 ACSS2Q9NR19 701 aa6.38□□□□□ -1.39
LINC00560-201ENST00000564593 HCFC2Q9Y5Z7 792 aa6.38□□□□□ -1.39
LINC00560-201ENST00000564593 BIN1O00499 593 aa6.37□□□□□ -1.39
LINC00560-201ENST00000564593 PRKD3O94806 890 aa6.37□□□□□ -1.39
LINC00560-201ENST00000564593 PAPLNO95428 1278 aa6.37□□□□□ -1.39
LINC00560-201ENST00000564593 MAPKAPK2P49137 400 aa6.37□□□□□ -1.39
LINC00560-201ENST00000564593 SESN3P58005 492 aa6.37□□□□□ -1.39
LINC00560-201ENST00000564593 CC2D1AQ6P1N0 951 aaPredicted RBP6.37□□□□□ -1.39
LINC00560-201ENST00000564593 ASPSCR1Q9BZE9 553 aa6.37□□□□□ -1.39
LINC00560-201ENST00000564593 KLHL14Q9P2G3 628 aa6.37□□□□□ -1.39
LINC00560-201ENST00000564593 PRAMEF25A6NGN4 478 aa6.36□□□□□ -1.39
LINC00560-201ENST00000564593 ALDH1L1O75891 902 aa6.36□□□□□ -1.39
LINC00560-201ENST00000564593 C4BPAP04003 597 aaKnown RBP6.36□□□□□ -1.39
LINC00560-201ENST00000564593 CYP17A1P05093 508 aa6.36□□□□□ -1.39
LINC00560-201ENST00000564593 GLI1P08151 1106 aa6.36□□□□□ -1.39
LINC00560-201ENST00000564593 SMAD3P84022 425 aaKnown RBP6.36□□□□□ -1.39
LINC00560-201ENST00000564593 SMAD2Q15796 467 aaKnown RBP6.36□□□□□ -1.39
LINC00560-201ENST00000564593 ZC3H14Q6PJT7 736 aaKnown RBP6.36□□□□□ -1.39
LINC00560-201ENST00000564593 CLRN3Q8NCR9 226 aa6.36□□□□□ -1.39
LINC00560-201ENST00000564593 TSPAN17Q96FV3 270 aa6.36□□□□□ -1.39
LINC00560-201ENST00000564593 SMAD5Q99717 465 aaKnown RBP6.36□□□□□ -1.39
LINC00560-201ENST00000564593 TRHDEQ9UKU6 1024 aa6.36□□□□□ -1.39
LINC00560-201ENST00000564593 PTX3P26022 381 aaPredicted RBP6.35□□□□□ -1.39
LINC00560-201ENST00000564593 LSP1P33241 339 aa6.35□□□□□ -1.39
LINC00560-201ENST00000564593 TERF2Q15554 542 aa6.35□□□□□ -1.39
LINC00560-201ENST00000564593 ZNF124Q15973 351 aa6.35□□□□□ -1.39
LINC00560-201ENST00000564593 KCNMB1Q16558 191 aa6.35□□□□□ -1.39
LINC00560-201ENST00000564593 PLEKHN1Q494U1 663 aaPredicted RBP6.35□□□□□ -1.39
LINC00560-201ENST00000564593 PAN2Q504Q3 1202 aaKnown RBP6.35□□□□□ -1.39
LINC00560-201ENST00000564593 ZSWIM9Q86XI8 627 aa6.35□□□□□ -1.39
LINC00560-201ENST00000564593 JDP2Q8WYK2 163 aa6.35□□□□□ -1.39
LINC00560-201ENST00000564593 YIPF4Q9BSR8 244 aa6.35□□□□□ -1.39
LINC00560-201ENST00000564593 PDGFDQ9GZP0 370 aaPredicted RBP6.35□□□□□ -1.39
LINC00560-201ENST00000564593 BCAS3Q9H6U6 928 aa6.35□□□□□ -1.39
LINC00560-201ENST00000564593 VTA1Q9NP79 307 aa6.35□□□□□ -1.39
LINC00560-201ENST00000564593 ACOT7O00154 380 aa6.35□□□□□ -1.39
LINC00560-201ENST00000564593 ABLIM1O14639 778 aa6.35□□□□□ -1.39
LINC00560-201ENST00000564593 PHC1P78364 1004 aa6.35□□□□□ -1.39
LINC00560-201ENST00000564593 SYDE2Q5VT97 1194 aa6.35□□□□□ -1.39
LINC00560-201ENST00000564593 IRF2BP1Q8IU81 584 aa6.35□□□□□ -1.39
LINC00560-201ENST00000564593 TTLL11Q8NHH1 800 aa6.35□□□□□ -1.39
LINC00560-201ENST00000564593 AHCYL2Q96HN2 611 aaKnown RBP6.35□□□□□ -1.39
LINC00560-201ENST00000564593 NOC2LQ9Y3T9 749 aaKnown RBP6.35□□□□□ -1.39
LINC00560-201ENST00000564593 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.34□□□□□ -1.39
LINC00560-201ENST00000564593 KRTAP9-7A8MTY7 169 aa6.34□□□□□ -1.39
LINC00560-201ENST00000564593 FOXP2O15409 715 aa6.34□□□□□ -1.39
LINC00560-201ENST00000564593 MARCH6O60337 910 aa6.34□□□□□ -1.39
LINC00560-201ENST00000564593 FAHP16930 419 aa6.34□□□□□ -1.39
LINC00560-201ENST00000564593 SDHAP31040 664 aa6.34□□□□□ -1.39
LINC00560-201ENST00000564593 YBX1P67809 324 aaKnown RBP6.34□□□□□ -1.39
LINC00560-201ENST00000564593 LRRC32Q14392 662 aa6.34□□□□□ -1.39
LINC00560-201ENST00000564593 TTF1Q15361 905 aaPredicted RBP6.34□□□□□ -1.39
LINC00560-201ENST00000564593 CATSPEREQ5SY80 951 aa6.34□□□□□ -1.39
LINC00560-201ENST00000564593 GPR158Q5T848 1215 aa6.34□□□□□ -1.39
LINC00560-201ENST00000564593 RASSF3Q86WH2 238 aa6.34□□□□□ -1.39
LINC00560-201ENST00000564593 ZZZ3Q8IYH5 903 aa6.34□□□□□ -1.39
LINC00560-201ENST00000564593 ZNF610Q8N9Z0 462 aa6.34□□□□□ -1.39
LINC00560-201ENST00000564593 ALG3Q92685 438 aa6.34□□□□□ -1.39
LINC00560-201ENST00000564593 MENTQ9BUN1 341 aa6.34□□□□□ -1.39
LINC00560-201ENST00000564593 GABRDO14764 452 aa6.33□□□□□ -1.4
LINC00560-201ENST00000564593 CD40P25942 277 aa6.33□□□□□ -1.4
LINC00560-201ENST00000564593 HERVK_113P62684 666 aa6.33□□□□□ -1.4
LINC00560-201ENST00000564593 OLFML2BQ68BL8 750 aa6.33□□□□□ -1.4
LINC00560-201ENST00000564593 ESRP1Q6NXG1 681 aaKnown RBP6.33□□□□□ -1.4
LINC00560-201ENST00000564593 MPZL3Q6UWV2 235 aa6.33□□□□□ -1.4
LINC00560-201ENST00000564593 TMC6Q7Z403 805 aa6.33□□□□□ -1.4
LINC00560-201ENST00000564593 FAM126BQ8IXS8 530 aa6.33□□□□□ -1.4
LINC00560-201ENST00000564593 ERCC4Q92889 916 aaPredicted RBP6.33□□□□□ -1.4
LINC00560-201ENST00000564593 TOE1Q96GM8 510 aaKnown RBP6.33□□□□□ -1.4
LINC00560-201ENST00000564593 ZMAT4Q9H898 229 aa6.33□□□□□ -1.4
LINC00560-201ENST00000564593 DTLQ9NZJ0 730 aa6.33□□□□□ -1.4
LINC00560-201ENST00000564593 THRAP3Q9Y2W1 955 aaKnown RBP6.33□□□□□ -1.4
LINC00560-201ENST00000564593 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.33□□□□□ -1.4
LINC00560-201ENST00000564593 RASSF10A6NK89 507 aa6.32□□□□□ -1.4
LINC00560-201ENST00000564593 K7ESF4 209 aa6.32□□□□□ -1.4
LINC00560-201ENST00000564593 FARP2O94887 1054 aaPredicted RBP6.32□□□□□ -1.4
LINC00560-201ENST00000564593 MMEP08473 750 aa6.32□□□□□ -1.4
LINC00560-201ENST00000564593 FNTBP49356 437 aa6.32□□□□□ -1.4
LINC00560-201ENST00000564593 ERVK-21P61565 698 aa6.32□□□□□ -1.4
LINC00560-201ENST00000564593 RGL3Q3MIN7 710 aa6.32□□□□□ -1.4
LINC00560-201ENST00000564593 ETV3LQ6ZN32 361 aa6.32□□□□□ -1.4
LINC00560-201ENST00000564593 FRMD7Q6ZUT3 714 aa6.32□□□□□ -1.4
LINC00560-201ENST00000564593 ZNF605Q86T29 641 aa6.32□□□□□ -1.4
LINC00560-201ENST00000564593 AMIGO3Q86WK7 504 aa6.32□□□□□ -1.4
LINC00560-201ENST00000564593 MIB1Q86YT6 1006 aa6.32□□□□□ -1.4
LINC00560-201ENST00000564593 C16orf92Q96LL3 132 aa6.32□□□□□ -1.4
LINC00560-201ENST00000564593 GBP4Q96PP9 640 aa6.32□□□□□ -1.4
LINC00560-201ENST00000564593 MS4A5Q9H3V2 200 aa6.32□□□□□ -1.4
LINC00560-201ENST00000564593 ZNF552Q9H707 407 aaPredicted RBP6.32□□□□□ -1.4
LINC00560-201ENST00000564593 TOPORSQ9NS56 1045 aaPredicted RBP6.32□□□□□ -1.4
LINC00560-201ENST00000564593 C14orf119Q9NWQ9 140 aa6.32□□□□□ -1.4
LINC00560-201ENST00000564593 PARNO95453 639 aaKnown RBP6.31□□□□□ -1.4
LINC00560-201ENST00000564593 LRG1P02750 347 aa6.31□□□□□ -1.4
LINC00560-201ENST00000564593 VIPR1P32241 457 aa6.31□□□□□ -1.4
LINC00560-201ENST00000564593 NEK2P51955 445 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms