RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 USP17L13C9JLJ4 530 aa17.73■□□□□ 0.43
PCDH1-203ENST00000394536 USP17L11C9JVI0 530 aa17.73■□□□□ 0.43
PCDH1-203ENST00000394536 USP17L18D6R9N7 530 aa17.73■□□□□ 0.43
PCDH1-203ENST00000394536 USP17L22D6RA61 530 aa17.73■□□□□ 0.43
PCDH1-203ENST00000394536 USP17L17D6RBQ6 530 aa17.73■□□□□ 0.43
PCDH1-203ENST00000394536 USP17L19D6RCP7 530 aa17.73■□□□□ 0.43
PCDH1-203ENST00000394536 USP17L20D6RJB6 530 aa17.73■□□□□ 0.43
PCDH1-203ENST00000394536 ADAMTS3O15072 1205 aa17.73■□□□□ 0.43
PCDH1-203ENST00000394536 USP17L24Q0WX57 530 aa17.73■□□□□ 0.43
PCDH1-203ENST00000394536 USP17L6PQ6QN14 398 aa17.73■□□□□ 0.43
PCDH1-203ENST00000394536 DNAJC7Q99615 494 aa17.73■□□□□ 0.43
PCDH1-203ENST00000394536 EMILIN3Q9NT22 766 aa17.73■□□□□ 0.43
PCDH1-203ENST00000394536 RBM12Q9NTZ6 932 aaKnown RBP17.73■□□□□ 0.43
PCDH1-203ENST00000394536 USP40Q9NVE5 1235 aa17.73■□□□□ 0.43
PCDH1-203ENST00000394536 PSD3Q9NYI0 1048 aa17.73■□□□□ 0.43
PCDH1-203ENST00000394536 STXBP3O00186 592 aa17.73■□□□□ 0.43
PCDH1-203ENST00000394536 PDE2AO00408 941 aaPredicted RBP17.73■□□□□ 0.43
PCDH1-203ENST00000394536 MAP2K1Q02750 393 aaPredicted RBP17.73■□□□□ 0.43
PCDH1-203ENST00000394536 CCDC26Q8TAB7 109 aa17.73■□□□□ 0.43
PCDH1-203ENST00000394536 STK17AQ9UEE5 414 aa17.73■□□□□ 0.43
PCDH1-203ENST00000394536 GSTTP1A0A1W2PQM5 241 aa17.73■□□□□ 0.43
PCDH1-203ENST00000394536 SFI1A8K8P3 1242 aa17.73■□□□□ 0.43
PCDH1-203ENST00000394536 EXOC3L4Q17RC7 722 aa17.73■□□□□ 0.43
PCDH1-203ENST00000394536 TMED8Q6PL24 325 aaPredicted RBP17.73■□□□□ 0.43
PCDH1-203ENST00000394536 MYCT1Q8N699 235 aa17.73■□□□□ 0.43
PCDH1-203ENST00000394536 NT5C3AQ9H0P0 336 aa17.73■□□□□ 0.43
PCDH1-203ENST00000394536 NUCKS1Q9H1E3 243 aaKnown RBP17.73■□□□□ 0.43
PCDH1-203ENST00000394536 MST1RQ04912 1400 aa17.72■□□□□ 0.43
PCDH1-203ENST00000394536 CLEC4GQ6UXB4 293 aa17.72■□□□□ 0.43
PCDH1-203ENST00000394536 LRRC45Q96CN5 670 aa17.72■□□□□ 0.43
PCDH1-203ENST00000394536 IQCDQ96DY2 449 aa17.72■□□□□ 0.43
PCDH1-203ENST00000394536 EHD4Q9H223 541 aa17.72■□□□□ 0.43
PCDH1-203ENST00000394536 REXO2Q9Y3B8 237 aaKnown RBP17.72■□□□□ 0.43
PCDH1-203ENST00000394536 FUT2Q10981 343 aa17.72■□□□□ 0.43
PCDH1-203ENST00000394536 TPH2Q8IWU9 490 aa17.72■□□□□ 0.43
PCDH1-203ENST00000394536 A0A087WUV0 522 aaPredicted RBP17.72■□□□□ 0.43
PCDH1-203ENST00000394536 PBX1P40424 430 aa17.72■□□□□ 0.43
PCDH1-203ENST00000394536 CARSP49589 748 aaKnown RBP17.72■□□□□ 0.43
PCDH1-203ENST00000394536 CYP2J2P51589 502 aa17.72■□□□□ 0.43
PCDH1-203ENST00000394536 DOK7Q18PE1 504 aa17.72■□□□□ 0.43
PCDH1-203ENST00000394536 WDR93Q6P2C0 686 aa17.72■□□□□ 0.43
PCDH1-203ENST00000394536 WDR59Q6PJI9 974 aa17.72■□□□□ 0.43
PCDH1-203ENST00000394536 FBXO33Q7Z6M2 555 aa17.72■□□□□ 0.43
PCDH1-203ENST00000394536 DNAAF5Q86Y56 855 aa17.72■□□□□ 0.43
PCDH1-203ENST00000394536 RIC8AQ9NPQ8 531 aa17.72■□□□□ 0.43
PCDH1-203ENST00000394536 KBTBD4Q9NVX7 518 aa17.72■□□□□ 0.43
PCDH1-203ENST00000394536 NPHP3-ACAD11A0A0J9YXS1 232 aa17.71■□□□□ 0.43
PCDH1-203ENST00000394536 H2AFZP0C0S5 128 aa17.71■□□□□ 0.43
PCDH1-203ENST00000394536 IRAK1P51617 712 aa17.71■□□□□ 0.43
PCDH1-203ENST00000394536 LRRC63Q05C16 580 aa17.71■□□□□ 0.43
PCDH1-203ENST00000394536 HAUS3Q68CZ6 603 aa17.71■□□□□ 0.43
PCDH1-203ENST00000394536 EMBQ6PCB8 327 aa17.71■□□□□ 0.43
PCDH1-203ENST00000394536 H2AFVQ71UI9 128 aa17.71■□□□□ 0.43
PCDH1-203ENST00000394536 APTXQ7Z2E3 356 aaKnown RBP17.71■□□□□ 0.43
PCDH1-203ENST00000394536 IRF2BP1Q8IU81 584 aa17.71■□□□□ 0.43
PCDH1-203ENST00000394536 EFCAB13Q8IY85 973 aa17.71■□□□□ 0.43
PCDH1-203ENST00000394536 LRRC37A3O60309 1634 aa17.71■□□□□ 0.43
PCDH1-203ENST00000394536 FAM196BA6NMK8 535 aa17.71■□□□□ 0.43
PCDH1-203ENST00000394536 BACH1O14867 736 aa17.71■□□□□ 0.43
PCDH1-203ENST00000394536 PRPF6O94906 941 aaKnown RBP17.71■□□□□ 0.43
PCDH1-203ENST00000394536 PLA2G4BP0C869 781 aa17.71■□□□□ 0.43
PCDH1-203ENST00000394536 MYBL2P10244 700 aa17.71■□□□□ 0.43
PCDH1-203ENST00000394536 TNFAIP3P21580 790 aa17.71■□□□□ 0.43
PCDH1-203ENST00000394536 GUCY1A3Q02108 690 aa17.71■□□□□ 0.43
PCDH1-203ENST00000394536 CETN1Q12798 172 aa17.71■□□□□ 0.43
PCDH1-203ENST00000394536 DUSP9Q99956 384 aaKnown RBP17.71■□□□□ 0.43
PCDH1-203ENST00000394536 IL17RBQ9NRM6 502 aa17.71■□□□□ 0.43
PCDH1-203ENST00000394536 ARHGAP20Q9P2F6 1191 aa17.71■□□□□ 0.43
PCDH1-203ENST00000394536 MAD2L2Q9UI95 211 aa17.71■□□□□ 0.43
PCDH1-203ENST00000394536 UTP11Q9Y3A2 253 aaKnown RBP17.71■□□□□ 0.43
PCDH1-203ENST00000394536 POTEB3A0JP26 581 aa17.71■□□□□ 0.43
PCDH1-203ENST00000394536 POTECB2RU33 542 aa17.71■□□□□ 0.43
PCDH1-203ENST00000394536 POTEBQ6S5H4 581 aa17.71■□□□□ 0.43
PCDH1-203ENST00000394536 SH2D4AQ9H788 454 aa17.71■□□□□ 0.43
PCDH1-203ENST00000394536 SERPING1P05155 500 aa17.7■□□□□ 0.42
PCDH1-203ENST00000394536 NAALADL2Q58DX5 795 aa17.7■□□□□ 0.42
PCDH1-203ENST00000394536 GBP6Q6ZN66 633 aa17.7■□□□□ 0.42
PCDH1-203ENST00000394536 TADA2BQ86TJ2 420 aa17.7■□□□□ 0.42
PCDH1-203ENST00000394536 VIMP08670 466 aaKnown RBP17.7■□□□□ 0.42
PCDH1-203ENST00000394536 NFIXQ14938 502 aa17.7■□□□□ 0.42
PCDH1-203ENST00000394536 ZYXQ15942 572 aaKnown RBP17.7■□□□□ 0.42
PCDH1-203ENST00000394536 GUF1Q8N442 669 aaKnown RBP17.7■□□□□ 0.42
PCDH1-203ENST00000394536 SEMA6BQ9H3T3 888 aa17.7■□□□□ 0.42
PCDH1-203ENST00000394536 TARSL2A2RTX5 802 aaKnown RBP17.7■□□□□ 0.42
PCDH1-203ENST00000394536 DDX39AO00148 427 aaKnown RBP17.7■□□□□ 0.42
PCDH1-203ENST00000394536 CFBP00751 764 aa17.7■□□□□ 0.42
PCDH1-203ENST00000394536 NR1D1P20393 614 aa17.7■□□□□ 0.42
PCDH1-203ENST00000394536 STAT3P40763 770 aa17.7■□□□□ 0.42
PCDH1-203ENST00000394536 APBA1Q02410 837 aa17.7■□□□□ 0.42
PCDH1-203ENST00000394536 TTBK2Q6IQ55 1244 aa17.7■□□□□ 0.42
PCDH1-203ENST00000394536 ALKBH5Q6P6C2 394 aaKnown RBP17.7■□□□□ 0.42
PCDH1-203ENST00000394536 PLAGL2Q9UPG8 496 aa17.7■□□□□ 0.42
PCDH1-203ENST00000394536 ZSCAN5CA6NGD5 496 aaPredicted RBP17.69■□□□□ 0.42
PCDH1-203ENST00000394536 STAT1P42224 750 aa17.69■□□□□ 0.42
PCDH1-203ENST00000394536 COASYQ13057 564 aa17.69■□□□□ 0.42
PCDH1-203ENST00000394536 SF3B3Q15393 1217 aaKnown RBP17.69■□□□□ 0.42
PCDH1-203ENST00000394536 PAPD7Q5XG87 772 aaKnown RBP17.69■□□□□ 0.42
PCDH1-203ENST00000394536 MARCH10Q8NA82 808 aaPredicted RBP17.69■□□□□ 0.42
PCDH1-203ENST00000394536 ARL8AQ96BM9 186 aa17.69■□□□□ 0.42
PCDH1-203ENST00000394536 DDX47Q9H0S4 455 aaKnown RBP17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms