RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 LRP6O75581 1613 aa3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 ARHGEF28Q8N1W1 1705 aaKnown RBP3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 A0A1W2PRG0 241 aa3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 CARNS1A5YM72 827 aa3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 KIF2AO00139 706 aaPredicted RBP3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 HUS1O60921 280 aa3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 DLATP10515 647 aaKnown RBP3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 SKIP12755 728 aa3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 SLC16A2P36021 539 aa3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 PSMC4P43686 418 aa3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 TFAMQ00059 246 aaKnown RBP3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 CYP4A11Q02928 519 aa3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 KRT81Q14533 505 aa3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 CDC37Q16543 378 aaPredicted RBP3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 MAP7D1Q3KQU3 841 aa3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 MAP9Q49MG5 647 aa3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 SEL1L2Q5TEA6 688 aa3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 TTBK2Q6IQ55 1244 aa3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 GPBP1Q86WP2 473 aa3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 TMEM199Q8N511 208 aa3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 ANKRD13CQ8N6S4 541 aa3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 BEST2Q8NFU1 509 aa3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 CCDC26Q8TAB7 109 aa3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 TBC1D16Q8TBP0 767 aa3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 CELF1Q92879 486 aaKnown RBP3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 HAUS1Q96CS2 278 aa3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 CFAP57Q96MR6 1250 aa3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 MMTAG2Q9BU76 263 aaKnown RBP3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 DSCC1Q9BVC3 393 aa3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 SLC28A3Q9HAS3 691 aa3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 ATP6V0A4Q9HBG4 840 aa3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 DACT1Q9NYF0 836 aa3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 IPPQ9Y573 584 aa3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 UTP18Q9Y5J1 556 aaKnown RBP eCLIP3.22□□□□□ -1.89
SMCHD1-203ENST00000577880 PIK3C2AO00443 1686 aa3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 SYCE3A1L190 88 aa3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 TRAK2O60296 914 aa3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 KPNA6O60684 536 aa3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 CTNND1O60716 968 aaKnown RBP3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 TACC1O75410 805 aa3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 RPS6KA5O75582 802 aa3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 ZMYND10O75800 440 aa3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 LRG1P02750 347 aa3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 CTSHP09668 335 aa3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 PPARGP37231 505 aaPredicted RBP3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 CDK8P49336 464 aa3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 BPIFB4P59827 614 aa3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 FAM193AP78312 1265 aa3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 SARNPP82979 210 aaKnown RBP3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 BFSP1Q12934 665 aa3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 SEPT2Q15019 361 aa3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 MAPK6Q16659 721 aa3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 SLC10A5Q5PT55 438 aa3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 IRAK1BP1Q5VVH5 260 aa3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 PRAMEF18Q5VWM3 479 aa3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 SLFN12LQ6IEE8 588 aa3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 AFAP1L2Q8N4X5 818 aa3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 TTLL11Q8NHH1 800 aa3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 SCFD2Q8WU76 684 aa3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 SYT17Q9BSW7 474 aa3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 C2orf40Q9H1Z8 148 aa3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 TBC1D22BQ9NU19 505 aa3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 AKAP7Q9P0M2 348 aaPredicted RBP3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 CPA4Q9UI42 421 aa3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 SRPRBQ9Y5M8 271 aaKnown RBP3.21□□□□□ -1.89
SMCHD1-203ENST00000577880 SYNJ2BP-COX16A0A087WUM0 186 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 STXBP3O00186 592 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 WDR46O15213 610 aaKnown RBP3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 IGSF3O75054 1194 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 SCG2P13521 617 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 MCM4P33991 863 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 CYP2J2P51589 502 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 DYNLL1P63167 89 aaKnown RBP3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 KRT76Q01546 638 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 RASSF7Q02833 373 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 MECOMQ03112 1051 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 EIF2B5Q13144 721 aaKnown RBP3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 MTMR2Q13614 643 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 RASGRF1Q13972 1273 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 RCSD1Q6JBY9 416 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 TTC23LQ6PF05 361 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 CEP128Q6ZU80 1094 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 TMC7Q7Z402 723 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 NME8Q8N427 588 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 FANCBQ8NB91 859 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 SOCS4Q8WXH5 440 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 CCDC127Q96BQ5 260 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 TTC14Q96N46 770 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 PUS3Q9BZE2 481 aaKnown RBP3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 VPS33BQ9H267 617 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 UBN1Q9NPG3 1134 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 JADE2Q9NQC1 790 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 RTN4Q9NQC3 1192 aaKnown RBP3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 TBC1D7Q9P0N9 293 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 COX16Q9P0S2 106 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 HPCAL4Q9UM19 191 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 CTTNBP2Q8WZ74 1663 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 SOS2Q07890 1332 aaPredicted RBP3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 CNTNAP4Q9C0A0 1308 aa3.21□□□□□ -1.9
SMCHD1-203ENST00000577880 ATP7BP35670 1465 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms