RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 DEAF1O75398 565 aaPredicted RBP15.06■□□□□ 0
CCDC88A-201ENST00000263630 SAAL1Q96ER3 474 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 RMDN2Q96LZ7 410 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 TRPV6Q9H1D0 765 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 MED7O43513 233 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 CEP78Q5JTW2 689 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 KRT26Q7Z3Y9 468 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 ANP32DO95626 131 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 AP2B1P63010 937 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 MORF4L2Q15014 288 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 KSR2Q6VAB6 950 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 CAB39Q9Y376 341 aaPredicted RBP15.06■□□□□ 0
CCDC88A-201ENST00000263630 HNRNPCP07910 306 aaKnown RBP eCLIP15.06■□□□□ 0
CCDC88A-201ENST00000263630 MDM2Q00987 491 aaPredicted RBP15.06■□□□□ 0
CCDC88A-201ENST00000263630 LRMPQ12912 555 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 DRP2Q13474 957 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 ICA1LQ8NDH6 482 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 NLRC4Q9NPP4 1024 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 NDE1Q9NXR1 346 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 ESRRBO95718 433 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 C10orf76Q5T2E6 689 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 JPH2Q9BR39 696 aaPredicted RBP15.06■□□□□ 0
CCDC88A-201ENST00000263630 DPH5Q9H2P9 285 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 SLC38A10Q9HBR0 1119 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 CBX8Q9HC52 389 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 NOP53Q9NZM5 478 aaKnown RBP15.06■□□□□ 0
CCDC88A-201ENST00000263630 WDR97A6NE52 1622 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 HNRNPRO43390 633 aaKnown RBP15.06■□□□□ 0
CCDC88A-201ENST00000263630 MT-ND3P03897 115 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 CIITAP33076 1130 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 TAF1BQ53T94 588 aaPredicted RBP15.06■□□□□ 0
CCDC88A-201ENST00000263630 TTLL7Q6ZT98 887 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 SMCR8Q8TEV9 937 aaPredicted RBP15.06■□□□□ 0
CCDC88A-201ENST00000263630 SH3GL2Q99962 352 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 TADA3O75528 432 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 DEPDC1Q5TB30 811 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 DYMQ7RTS9 669 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 NEK8Q86SG6 692 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 ANKRD36BP1Q96IX9 119 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 SAP30BPQ9UHR5 308 aaKnown RBP15.06■□□□□ 0
CCDC88A-201ENST00000263630 FIS1Q9Y3D6 152 aa15.06■□□□□ 0
CCDC88A-201ENST00000263630 PLEKHG3A1L390 1219 aa15.05■□□□□ 0
CCDC88A-201ENST00000263630 S100A5P33763 92 aa15.05■□□□□ 0
CCDC88A-201ENST00000263630 EPHB4P54760 987 aa15.05■□□□□ 0
CCDC88A-201ENST00000263630 EIF3BP55884 814 aaKnown RBP15.05■□□□□ 0
CCDC88A-201ENST00000263630 ZNF644Q9H582 1327 aaPredicted RBP15.05■□□□□ 0
CCDC88A-201ENST00000263630 ATP8B2P98198 1209 aa15.05■□□□□ 0
CCDC88A-201ENST00000263630 IMPG1Q17R60 797 aa15.05■□□□□ 0
CCDC88A-201ENST00000263630 USH1GQ495M9 461 aa15.05■□□□□ 0
CCDC88A-201ENST00000263630 ACAD11Q709F0 780 aa15.05■□□□□ 0
CCDC88A-201ENST00000263630 KDRP35968 1356 aa15.05■□□□□ 0
CCDC88A-201ENST00000263630 ATP8B1O43520 1251 aa15.05■□□□□ 0
CCDC88A-201ENST00000263630 HSPD1P10809 573 aaKnown RBP15.05■□□□□ 0
CCDC88A-201ENST00000263630 CATSPER1Q8NEC5 780 aa15.05■□□□□ 0
CCDC88A-201ENST00000263630 B4GALNT2Q8NHY0 566 aa15.05■□□□□ 0
CCDC88A-201ENST00000263630 VPS39Q96JC1 886 aa15.05■□□□□ 0
CCDC88A-201ENST00000263630 SCG2P13521 617 aa15.05■□□□□ -0
CCDC88A-201ENST00000263630 GUCY2DQ02846 1103 aa15.05■□□□□ -0
CCDC88A-201ENST00000263630 KRT39Q6A163 491 aa15.05■□□□□ -0
CCDC88A-201ENST00000263630 RRM2BQ7LG56 351 aa15.05■□□□□ -0
CCDC88A-201ENST00000263630 CCDC151A5D8V7 595 aa15.05■□□□□ -0
CCDC88A-201ENST00000263630 MMEP08473 750 aa15.05■□□□□ -0
CCDC88A-201ENST00000263630 CCDC15Q0P6D6 951 aa15.05■□□□□ -0
CCDC88A-201ENST00000263630 NLRP9Q7RTR0 991 aa15.05■□□□□ -0
CCDC88A-201ENST00000263630 ANKRD44Q8N8A2 993 aa15.05■□□□□ -0
CCDC88A-201ENST00000263630 HAUS4Q9H6D7 363 aa15.05■□□□□ -0
CCDC88A-201ENST00000263630 MROH2BQ7Z745 1585 aa15.05■□□□□ -0
CCDC88A-201ENST00000263630 SLFN14P0C7P3 912 aa15.05■□□□□ -0
CCDC88A-201ENST00000263630 EIF6P56537 245 aaKnown RBP15.05■□□□□ -0
CCDC88A-201ENST00000263630 PRG3Q9Y2Y8 225 aaPredicted RBP15.05■□□□□ -0
CCDC88A-201ENST00000263630 ARL4AP40617 200 aa15.05■□□□□ -0
CCDC88A-201ENST00000263630 MORC3Q14149 939 aa15.05■□□□□ -0
CCDC88A-201ENST00000263630 TRIM71Q2Q1W2 868 aaKnown RBP15.05■□□□□ -0
CCDC88A-201ENST00000263630 NBPF9Q3BBW0 867 aa15.05■□□□□ -0
CCDC88A-201ENST00000263630 STK17AQ9UEE5 414 aa15.05■□□□□ -0
CCDC88A-201ENST00000263630 PAIP2BQ9ULR5 123 aaKnown RBP15.05■□□□□ -0
CCDC88A-201ENST00000263630 TMED2Q15363 201 aa15.05■□□□□ -0
CCDC88A-201ENST00000263630 TMEM245Q9H330 911 aa15.05■□□□□ -0
CCDC88A-201ENST00000263630 RRP15Q9Y3B9 282 aaKnown RBP15.05■□□□□ -0
CCDC88A-201ENST00000263630 LMBR1LQ6UX01 489 aa15.04■□□□□ -0
CCDC88A-201ENST00000263630 MBIPQ9NS73 344 aa15.04■□□□□ -0
CCDC88A-201ENST00000263630 CFLARO15519 480 aa15.04■□□□□ -0
CCDC88A-201ENST00000263630 ZSCAN9O15535 394 aaPredicted RBP15.04■□□□□ -0
CCDC88A-201ENST00000263630 SNX2O60749 519 aa15.04■□□□□ -0
CCDC88A-201ENST00000263630 BRD1O95696 1058 aa15.04■□□□□ -0
CCDC88A-201ENST00000263630 PDE6BP35913 854 aa15.04■□□□□ -0
CCDC88A-201ENST00000263630 MMS22LQ6ZRQ5 1243 aa15.04■□□□□ -0
CCDC88A-201ENST00000263630 MAGOHBQ96A72 148 aaKnown RBP15.04■□□□□ -0
CCDC88A-201ENST00000263630 AS3MTQ9HBK9 375 aa15.04■□□□□ -0
CCDC88A-201ENST00000263630 CTNND1O60716 968 aaKnown RBP15.04■□□□□ -0
CCDC88A-201ENST00000263630 E2F5Q15329 346 aa15.04■□□□□ -0
CCDC88A-201ENST00000263630 PPHLN1Q8NEY8 458 aaKnown RBP15.04■□□□□ -0
CCDC88A-201ENST00000263630 XAGE3Q8WTP9 111 aa15.04■□□□□ -0
CCDC88A-201ENST00000263630 K7ENM7 598 aa15.04■□□□□ -0
CCDC88A-201ENST00000263630 TADA2BQ86TJ2 420 aa15.04■□□□□ -0
CCDC88A-201ENST00000263630 SLC26A7Q8TE54 656 aa15.04■□□□□ -0
CCDC88A-201ENST00000263630 MLXIPQ9HAP2 919 aa15.04■□□□□ -0
CCDC88A-201ENST00000263630 INTUQ9ULD6 942 aa15.04■□□□□ -0
CCDC88A-201ENST00000263630 LZTS3O60299 673 aaPredicted RBP15.04■□□□□ -0
CCDC88A-201ENST00000263630 PANK4Q9NVE7 773 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms