RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 A0A1W2PQC6 194 aa23.34■■□□□ 1.33
CCDC88B-203ENST00000359902 CCNE1P24864 410 aa23.34■■□□□ 1.33
CCDC88B-203ENST00000359902 PDE6BP35913 854 aa23.34■■□□□ 1.33
CCDC88B-203ENST00000359902 PPP1R18Q6NYC8 613 aa23.34■■□□□ 1.33
CCDC88B-203ENST00000359902 CYP26C1Q6V0L0 522 aa23.34■■□□□ 1.33
CCDC88B-203ENST00000359902 P2RX5Q93086 422 aa23.34■■□□□ 1.33
CCDC88B-203ENST00000359902 ADAMTSL1Q8N6G6 1762 aa23.34■■□□□ 1.33
CCDC88B-203ENST00000359902 G3V3G9 751 aa23.34■■□□□ 1.33
CCDC88B-203ENST00000359902 HLA-DOAP06340 250 aa23.34■■□□□ 1.33
CCDC88B-203ENST00000359902 DCAF8Q5TAQ9 597 aa23.34■■□□□ 1.33
CCDC88B-203ENST00000359902 ZFPM1Q8IX07 1006 aa23.34■■□□□ 1.33
CCDC88B-203ENST00000359902 CSGALNACT2Q8N6G5 542 aa23.34■■□□□ 1.33
CCDC88B-203ENST00000359902 AKT1S1Q96B36 256 aa23.34■■□□□ 1.33
CCDC88B-203ENST00000359902 BLOC1S4Q9NUP1 217 aa23.34■■□□□ 1.33
CCDC88B-203ENST00000359902 MAGEC2Q9UBF1 373 aaPredicted RBP23.34■■□□□ 1.33
CCDC88B-203ENST00000359902 SLURP2P0DP57 97 aa23.33■■□□□ 1.33
CCDC88B-203ENST00000359902 FCER1AP12319 257 aa23.33■■□□□ 1.33
CCDC88B-203ENST00000359902 ANKRD40Q6AI12 368 aa23.33■■□□□ 1.33
CCDC88B-203ENST00000359902 PNMA5Q96PV4 448 aa23.33■■□□□ 1.33
CCDC88B-203ENST00000359902 KCNQ5Q9NR82 932 aa23.33■■□□□ 1.33
CCDC88B-203ENST00000359902 ZNF446Q9NWS9 450 aa23.33■■□□□ 1.33
CCDC88B-203ENST00000359902 MPHOSPH10O00566 681 aaKnown RBP23.33■■□□□ 1.33
CCDC88B-203ENST00000359902 SLC16A2P36021 539 aa23.33■■□□□ 1.33
CCDC88B-203ENST00000359902 GPATCH4Q5T3I0 446 aaKnown RBP23.33■■□□□ 1.33
CCDC88B-203ENST00000359902 ACRBPQ8NEB7 543 aa23.33■■□□□ 1.33
CCDC88B-203ENST00000359902 MASTLQ96GX5 879 aa23.33■■□□□ 1.33
CCDC88B-203ENST00000359902 GTPBP4Q9BZE4 634 aaKnown RBP23.33■■□□□ 1.33
CCDC88B-203ENST00000359902 TTC26A0AVF1 554 aa23.32■■□□□ 1.32
CCDC88B-203ENST00000359902 BICDL2A1A5D9 508 aa23.32■■□□□ 1.32
CCDC88B-203ENST00000359902 CRKP46108 304 aa23.32■■□□□ 1.32
CCDC88B-203ENST00000359902 CLK2P49760 499 aaKnown RBP23.32■■□□□ 1.32
CCDC88B-203ENST00000359902 PDIA5Q14554 519 aa23.32■■□□□ 1.32
CCDC88B-203ENST00000359902 UBE2SQ16763 222 aa23.32■■□□□ 1.32
CCDC88B-203ENST00000359902 SV2BQ7L1I2 683 aa23.32■■□□□ 1.32
CCDC88B-203ENST00000359902 KIF5CO60282 957 aa23.32■■□□□ 1.32
CCDC88B-203ENST00000359902 ATP2B2Q01814 1243 aa23.32■■□□□ 1.32
CCDC88B-203ENST00000359902 TMEM266Q2M3C6 531 aa23.32■■□□□ 1.32
CCDC88B-203ENST00000359902 COBLL1Q53SF7 1204 aa23.32■■□□□ 1.32
CCDC88B-203ENST00000359902 TUBGCP2Q9BSJ2 902 aa23.32■■□□□ 1.32
CCDC88B-203ENST00000359902 TMX4Q9H1E5 349 aaPredicted RBP23.32■■□□□ 1.32
CCDC88B-203ENST00000359902 EHD4Q9H223 541 aa23.32■■□□□ 1.32
CCDC88B-203ENST00000359902 STK17AQ9UEE5 414 aa23.32■■□□□ 1.32
CCDC88B-203ENST00000359902 MMP10P09238 476 aa23.31■■□□□ 1.32
CCDC88B-203ENST00000359902 PPP1R2P41236 205 aa23.31■■□□□ 1.32
CCDC88B-203ENST00000359902 TNNI2P48788 182 aa23.31■■□□□ 1.32
CCDC88B-203ENST00000359902 DNM2P50570 870 aa23.31■■□□□ 1.32
CCDC88B-203ENST00000359902 PPP2R3AQ06190 1150 aa23.31■■□□□ 1.32
CCDC88B-203ENST00000359902 CCDC96Q2M329 555 aa23.31■■□□□ 1.32
CCDC88B-203ENST00000359902 PPP4R3AQ6IN85 833 aa23.31■■□□□ 1.32
CCDC88B-203ENST00000359902 KCTD1Q719H9 257 aa23.31■■□□□ 1.32
CCDC88B-203ENST00000359902 MTMR8Q96EF0 704 aa23.31■■□□□ 1.32
CCDC88B-203ENST00000359902 GREB1LQ9C091 1923 aaPredicted RBP23.31■■□□□ 1.32
CCDC88B-203ENST00000359902 USP17L10C9JJH3 530 aa23.31■■□□□ 1.32
CCDC88B-203ENST00000359902 PES1O00541 588 aaKnown RBP23.31■■□□□ 1.32
CCDC88B-203ENST00000359902 ZBTB5O15062 677 aa23.31■■□□□ 1.32
CCDC88B-203ENST00000359902 MCM6Q14566 821 aa23.31■■□□□ 1.32
CCDC88B-203ENST00000359902 CNNM4Q6P4Q7 775 aa23.31■■□□□ 1.32
CCDC88B-203ENST00000359902 PODNQ7Z5L7 613 aa23.31■■□□□ 1.32
CCDC88B-203ENST00000359902 KIAA0895Q8NCT3 520 aa23.31■■□□□ 1.32
CCDC88B-203ENST00000359902 OR8K1Q8NGG5 319 aa23.31■■□□□ 1.32
CCDC88B-203ENST00000359902 HPS3Q969F9 1004 aa23.31■■□□□ 1.32
CCDC88B-203ENST00000359902 EEF2KMTQ96G04 330 aa23.31■■□□□ 1.32
CCDC88B-203ENST00000359902 CCDC17Q96LX7 622 aa23.31■■□□□ 1.32
CCDC88B-203ENST00000359902 ZDHHC15Q96MV8 337 aa23.31■■□□□ 1.32
CCDC88B-203ENST00000359902 CHP1Q99653 195 aa23.31■■□□□ 1.32
CCDC88B-203ENST00000359902 DNAJC18Q9H819 358 aa23.31■■□□□ 1.32
CCDC88B-203ENST00000359902 DBNDD1Q9H9R9 158 aa23.31■■□□□ 1.32
CCDC88B-203ENST00000359902 FAM53CQ9NYF3 392 aa23.31■■□□□ 1.32
CCDC88B-203ENST00000359902 MYMKA6NI61 221 aa23.3■■□□□ 1.32
CCDC88B-203ENST00000359902 B4DLN1 442 aa23.3■■□□□ 1.32
CCDC88B-203ENST00000359902 CLCN6P51797 869 aa23.3■■□□□ 1.32
CCDC88B-203ENST00000359902 CUL5Q93034 780 aa23.3■■□□□ 1.32
CCDC88B-203ENST00000359902 PRDM10Q9NQV6 1147 aa23.3■■□□□ 1.32
CCDC88B-203ENST00000359902 CAPN11Q9UMQ6 739 aa23.3■■□□□ 1.32
CCDC88B-203ENST00000359902 LUC7L2Q9Y383 392 aaKnown RBP23.3■■□□□ 1.32
CCDC88B-203ENST00000359902 POTEMA6NI47 508 aa23.3■■□□□ 1.32
CCDC88B-203ENST00000359902 DNAJC7Q99615 494 aa23.3■■□□□ 1.32
CCDC88B-203ENST00000359902 NUDT12Q9BQG2 462 aa23.3■■□□□ 1.32
CCDC88B-203ENST00000359902 RAB34Q9BZG1 259 aa23.3■■□□□ 1.32
CCDC88B-203ENST00000359902 PCDHAC2Q9Y5I4 1007 aa23.3■■□□□ 1.32
CCDC88B-203ENST00000359902 COL11A2P13942 1736 aaPredicted RBP23.29■■□□□ 1.32
CCDC88B-203ENST00000359902 ABL1P00519 1130 aa23.29■■□□□ 1.32
CCDC88B-203ENST00000359902 MRPL12P52815 198 aaKnown RBP23.29■■□□□ 1.32
CCDC88B-203ENST00000359902 ZNF569Q5MCW4 686 aa23.29■■□□□ 1.32
CCDC88B-203ENST00000359902 LARP4BQ92615 738 aaKnown RBP23.29■■□□□ 1.32
CCDC88B-203ENST00000359902 ARHGAP25P42331 645 aa23.28■■□□□ 1.32
CCDC88B-203ENST00000359902 RSRC2Q7L4I2 434 aaKnown RBP23.28■■□□□ 1.32
CCDC88B-203ENST00000359902 CDK5RAP3Q96JB5 506 aa23.28■■□□□ 1.32
CCDC88B-203ENST00000359902 CNOT6LQ96LI5 555 aaKnown RBP23.28■■□□□ 1.32
CCDC88B-203ENST00000359902 SEMA6BQ9H3T3 888 aa23.28■■□□□ 1.32
CCDC88B-203ENST00000359902 SLC39A2Q9NP94 309 aa23.28■■□□□ 1.32
CCDC88B-203ENST00000359902 PVALEFA0A1B0GWK0 134 aa23.28■■□□□ 1.32
CCDC88B-203ENST00000359902 ZSCAN20P17040 1043 aaPredicted RBP23.28■■□□□ 1.32
CCDC88B-203ENST00000359902 CACNB3P54284 484 aa23.28■■□□□ 1.32
CCDC88B-203ENST00000359902 UNC13DQ70J99 1090 aa23.28■■□□□ 1.32
CCDC88B-203ENST00000359902 FAM114A1Q8IWE2 563 aa23.28■■□□□ 1.32
CCDC88B-203ENST00000359902 ZNF622Q969S3 477 aaKnown RBP eCLIP23.28■■□□□ 1.322e-6■■□□□ 12.6
CCDC88B-203ENST00000359902 SLF1Q9BQI6 1058 aa23.28■■□□□ 1.32
CCDC88B-203ENST00000359902 MRIQ9BWK5 157 aa23.28■■□□□ 1.32
CCDC88B-203ENST00000359902 PSTPIP2Q9H939 334 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms