RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 IL1R1P14778 569 aa25.57■■□□□ 1.68
VPS53-211ENST00000571805 JAKMIP3Q5VZ66 844 aa25.57■■□□□ 1.68
VPS53-211ENST00000571805 C6orf50Q9HD87 102 aa25.57■■□□□ 1.68
VPS53-211ENST00000571805 ARFGAP3Q9NP61 516 aa25.57■■□□□ 1.68
VPS53-211ENST00000571805 EPN1Q9Y6I3 576 aaPredicted RBP25.57■■□□□ 1.68
VPS53-211ENST00000571805 SMARCA1P28370 1054 aa25.56■■□□□ 1.68
VPS53-211ENST00000571805 NOVP48745 357 aa25.56■■□□□ 1.68
VPS53-211ENST00000571805 RHBDL3P58872 404 aa25.56■■□□□ 1.68
VPS53-211ENST00000571805 TRIM9Q9C026 710 aa25.56■■□□□ 1.68
VPS53-211ENST00000571805 CAPN11Q9UMQ6 739 aa25.56■■□□□ 1.68
VPS53-211ENST00000571805 NDUFA10O95299 355 aa25.56■■□□□ 1.68
VPS53-211ENST00000571805 GNA11P29992 359 aa25.56■■□□□ 1.68
VPS53-211ENST00000571805 PRR5LQ6MZQ0 368 aa25.56■■□□□ 1.68
VPS53-211ENST00000571805 NOC3LQ8WTT2 800 aaKnown RBP25.56■■□□□ 1.68
VPS53-211ENST00000571805 RRP36Q96EU6 259 aaKnown RBP25.56■■□□□ 1.68
VPS53-211ENST00000571805 NAPGQ99747 312 aaPredicted RBP25.56■■□□□ 1.68
VPS53-211ENST00000571805 C7orf25Q9BPX7 421 aa25.56■■□□□ 1.68
VPS53-211ENST00000571805 ANKZF1Q9H8Y5 726 aa25.56■■□□□ 1.68
VPS53-211ENST00000571805 NEK8Q86SG6 692 aa25.55■■□□□ 1.68
VPS53-211ENST00000571805 CEP95Q96GE4 821 aa25.55■■□□□ 1.68
VPS53-211ENST00000571805 LUC7L2Q9Y383 392 aaKnown RBP25.55■■□□□ 1.68
VPS53-211ENST00000571805 UFL1O94874 794 aa25.55■■□□□ 1.68
VPS53-211ENST00000571805 WDR59Q6PJI9 974 aa25.55■■□□□ 1.68
VPS53-211ENST00000571805 FAM163AQ96GL9 167 aaPredicted RBP25.55■■□□□ 1.68
VPS53-211ENST00000571805 FUT8Q9BYC5 575 aa25.55■■□□□ 1.68
VPS53-211ENST00000571805 CCDC151A5D8V7 595 aa25.54■■□□□ 1.68
VPS53-211ENST00000571805 DNM2P50570 870 aa25.54■■□□□ 1.68
VPS53-211ENST00000571805 FAM196AQ6ZSG2 479 aa25.54■■□□□ 1.68
VPS53-211ENST00000571805 MMTAG2Q9BU76 263 aaKnown RBP25.54■■□□□ 1.68
VPS53-211ENST00000571805 MAGEC2Q9UBF1 373 aaPredicted RBP25.54■■□□□ 1.68
VPS53-211ENST00000571805 SRGNP10124 158 aa25.54■■□□□ 1.68
VPS53-211ENST00000571805 ATP2B4P23634 1241 aa25.54■■□□□ 1.68
VPS53-211ENST00000571805 STK4Q13043 487 aa25.54■■□□□ 1.68
VPS53-211ENST00000571805 BRD3Q15059 726 aa25.54■■□□□ 1.68
VPS53-211ENST00000571805 CERKQ8TCT0 537 aa25.54■■□□□ 1.68
VPS53-211ENST00000571805 PIGSQ96S52 555 aa25.54■■□□□ 1.68
VPS53-211ENST00000571805 TFRCP02786 760 aaKnown RBP25.53■■□□□ 1.68
VPS53-211ENST00000571805 PLCG2P16885 1265 aa25.53■■□□□ 1.68
VPS53-211ENST00000571805 CCNE1P24864 410 aa25.53■■□□□ 1.68
VPS53-211ENST00000571805 CRY2Q49AN0 593 aa25.53■■□□□ 1.68
VPS53-211ENST00000571805 CSGALNACT2Q8N6G5 542 aa25.53■■□□□ 1.68
VPS53-211ENST00000571805 RPGRQ92834 1020 aaKnown RBP25.53■■□□□ 1.68
VPS53-211ENST00000571805 P2RX5Q93086 422 aa25.53■■□□□ 1.68
VPS53-211ENST00000571805 VAT1LQ9HCJ6 419 aa25.53■■□□□ 1.68
VPS53-211ENST00000571805 THSD7AQ9UPZ6 1657 aa25.53■■□□□ 1.68
VPS53-211ENST00000571805 TECP42680 631 aa25.53■■□□□ 1.68
VPS53-211ENST00000571805 PDE4DQ08499 809 aa25.53■■□□□ 1.68
VPS53-211ENST00000571805 ANKRD40Q6AI12 368 aa25.53■■□□□ 1.68
VPS53-211ENST00000571805 FNBP4Q8N3X1 1017 aaPredicted RBP25.53■■□□□ 1.68
VPS53-211ENST00000571805 MSANTD4Q8NCY6 345 aa25.53■■□□□ 1.68
VPS53-211ENST00000571805 TBCKQ8TEA7 893 aa25.53■■□□□ 1.68
VPS53-211ENST00000571805 TUBGCP2Q9BSJ2 902 aa25.53■■□□□ 1.68
VPS53-211ENST00000571805 TTYH3Q9C0H2 523 aa25.53■■□□□ 1.68
VPS53-211ENST00000571805 RASSF10A6NK89 507 aa25.52■■□□□ 1.68
VPS53-211ENST00000571805 B4DLN1 442 aa25.52■■□□□ 1.68
VPS53-211ENST00000571805 AMPD2Q01433 879 aa25.52■■□□□ 1.68
VPS53-211ENST00000571805 SEC63Q9UGP8 760 aaKnown RBP25.52■■□□□ 1.68
VPS53-211ENST00000571805 RAB21Q9UL25 225 aa25.52■■□□□ 1.68
VPS53-211ENST00000571805 USP17L5A8MUK1 530 aa25.52■■□□□ 1.68
VPS53-211ENST00000571805 PES1O00541 588 aaKnown RBP25.52■■□□□ 1.68
VPS53-211ENST00000571805 TUBB4BP68371 445 aa25.52■■□□□ 1.68
VPS53-211ENST00000571805 WHAMMP3Q1A5X7 153 aa25.52■■□□□ 1.68
VPS53-211ENST00000571805 LONRF2Q1L5Z9 754 aa25.52■■□□□ 1.68
VPS53-211ENST00000571805 SOGA3Q5TF21 947 aa25.52■■□□□ 1.68
VPS53-211ENST00000571805 RIOX1Q9H6W3 641 aa25.52■■□□□ 1.68
VPS53-211ENST00000571805 GGA1Q9UJY5 639 aa25.52■■□□□ 1.68
VPS53-211ENST00000571805 GAKO14976 1311 aa25.51■■□□□ 1.67
VPS53-211ENST00000571805 ESYT2A0FGR8 921 aa25.51■■□□□ 1.67
VPS53-211ENST00000571805 MEA1Q16626 185 aa25.51■■□□□ 1.67
VPS53-211ENST00000571805 HNRNPLLQ8WVV9 542 aaKnown RBP25.51■■□□□ 1.67
VPS53-211ENST00000571805 UBA5Q9GZZ9 404 aa25.51■■□□□ 1.67
VPS53-211ENST00000571805 EXOC1Q9NV70 894 aa25.51■■□□□ 1.67
VPS53-211ENST00000571805 BIN2Q9UBW5 565 aaPredicted RBP25.51■■□□□ 1.67
VPS53-211ENST00000571805 TRIM10Q9UDY6 481 aa25.51■■□□□ 1.67
VPS53-211ENST00000571805 BICDL2A1A5D9 508 aa25.51■■□□□ 1.67
VPS53-211ENST00000571805 FCER1AP12319 257 aa25.51■■□□□ 1.67
VPS53-211ENST00000571805 ASIC1P78348 528 aa25.51■■□□□ 1.67
VPS53-211ENST00000571805 ORC2Q13416 577 aaPredicted RBP25.51■■□□□ 1.67
VPS53-211ENST00000571805 MFSD14BQ5SR56 506 aa25.51■■□□□ 1.67
VPS53-211ENST00000571805 CCDC47Q96A33 483 aaKnown RBP25.51■■□□□ 1.67
VPS53-211ENST00000571805 PNKPQ96T60 521 aa25.5■■□□□ 1.67
VPS53-211ENST00000571805 TMEM260Q9NX78 707 aa25.5■■□□□ 1.67
VPS53-211ENST00000571805 POTEB2H3BUK9 544 aa25.49■■□□□ 1.67
VPS53-211ENST00000571805 HERVK_113P62684 666 aa25.49■■□□□ 1.67
VPS53-211ENST00000571805 COBLL1Q53SF7 1204 aa25.49■■□□□ 1.67
VPS53-211ENST00000571805 POTEDQ86YR6 584 aa25.49■■□□□ 1.67
VPS53-211ENST00000571805 REXO1Q8N1G1 1221 aaKnown RBP25.49■■□□□ 1.67
VPS53-211ENST00000571805 EEF2KMTQ96G04 330 aa25.49■■□□□ 1.67
VPS53-211ENST00000571805 MTMR9Q96QG7 549 aa25.49■■□□□ 1.67
VPS53-211ENST00000571805 HAUS4Q9H6D7 363 aa25.49■■□□□ 1.67
VPS53-211ENST00000571805 SMC1AQ14683 1233 aaKnown RBP25.49■■□□□ 1.67
VPS53-211ENST00000571805 CNOT6LQ96LI5 555 aaKnown RBP25.49■■□□□ 1.67
VPS53-211ENST00000571805 AGPAT5Q9NUQ2 364 aa25.49■■□□□ 1.67
VPS53-211ENST00000571805 MYO6Q9UM54 1294 aa25.49■■□□□ 1.67
VPS53-211ENST00000571805 GUCA1BQ9UMX6 200 aa25.49■■□□□ 1.67
VPS53-211ENST00000571805 FOCADQ5VW36 1801 aa25.49■■□□□ 1.67
VPS53-211ENST00000571805 MAP2K7O14733 419 aa25.48■■□□□ 1.67
VPS53-211ENST00000571805 TOM1O60784 492 aa25.48■■□□□ 1.67
VPS53-211ENST00000571805 AMPD3Q01432 767 aa25.48■■□□□ 1.67
VPS53-211ENST00000571805 MIIPQ5JXC2 388 aa25.48■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 95.4 ms