RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 STAMQ92783 540 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 PALMDQ9NP74 551 aa15.09■□□□□ 0.01
CSPG4-201ENST00000308508 NR1D1P20393 614 aa15.08■□□□□ 0.01
CSPG4-201ENST00000308508 NSFP46459 744 aaKnown RBP15.08■□□□□ 0.01
CSPG4-201ENST00000308508 OTUD7BQ6GQQ9 843 aa15.08■□□□□ 0.01
CSPG4-201ENST00000308508 RDH13Q8NBN7 331 aa15.08■□□□□ 0.01
CSPG4-201ENST00000308508 SKA2Q8WVK7 121 aaPredicted RBP15.08■□□□□ 0.01
CSPG4-201ENST00000308508 USP6NLQ92738 828 aa15.08■□□□□ 0.01
CSPG4-201ENST00000308508 E9PMD0 336 aa15.08■□□□□ 0.01
CSPG4-201ENST00000308508 M0QZ92 97 aa15.08■□□□□ 0.01
CSPG4-201ENST00000308508 SEC31AO94979 1220 aaKnown RBP15.08■□□□□ 0.01
CSPG4-201ENST00000308508 IQCB1Q15051 598 aa15.08■□□□□ 0.01
CSPG4-201ENST00000308508 SRRM1Q8IYB3 904 aaKnown RBP15.08■□□□□ 0.01
CSPG4-201ENST00000308508 GAS7O60861 476 aa15.08■□□□□ 0
CSPG4-201ENST00000308508 ATP5HO75947 161 aa15.08■□□□□ 0
CSPG4-201ENST00000308508 ESRRAP11474 423 aaPredicted RBP15.08■□□□□ 0
CSPG4-201ENST00000308508 NNTQ13423 1086 aa15.08■□□□□ 0
CSPG4-201ENST00000308508 TMED2Q15363 201 aa15.08■□□□□ 0
CSPG4-201ENST00000308508 VPS54Q9P1Q0 977 aa15.08■□□□□ 0
CSPG4-201ENST00000308508 PLCH2O75038 1416 aa15.08■□□□□ 0
CSPG4-201ENST00000308508 NUP160Q12769 1436 aa15.08■□□□□ 0
CSPG4-201ENST00000308508 SPAG7O75391 227 aa15.08■□□□□ 0
CSPG4-201ENST00000308508 ZNF274Q96GC6 653 aaPredicted RBP15.08■□□□□ 0
CSPG4-201ENST00000308508 PAWRQ96IZ0 340 aaKnown RBP15.08■□□□□ 0
CSPG4-201ENST00000308508 DSCC1Q9BVC3 393 aa15.08■□□□□ 0
CSPG4-201ENST00000308508 H7C0C1 242 aa15.08■□□□□ 0
CSPG4-201ENST00000308508 PGRMC1O00264 195 aaKnown RBP15.08■□□□□ 0
CSPG4-201ENST00000308508 GTPBP6O43824 516 aaPredicted RBP15.08■□□□□ 0
CSPG4-201ENST00000308508 HEXIM1O94992 359 aaKnown RBP15.08■□□□□ 0
CSPG4-201ENST00000308508 TNNC2P02585 160 aa15.08■□□□□ 0
CSPG4-201ENST00000308508 RPN1P04843 607 aaKnown RBP15.08■□□□□ 0
CSPG4-201ENST00000308508 ATP5OP48047 213 aa15.08■□□□□ 0
CSPG4-201ENST00000308508 NEK2P51955 445 aa15.08■□□□□ 0
CSPG4-201ENST00000308508 NBPF10Q6P3W6 841 aaKnown RBP15.08■□□□□ 0
CSPG4-201ENST00000308508 SLC35F6Q8N357 371 aa15.08■□□□□ 0
CSPG4-201ENST00000308508 MED10Q9BTT4 135 aa15.08■□□□□ 0
CSPG4-201ENST00000308508 GINS2Q9Y248 185 aa15.08■□□□□ 0
CSPG4-201ENST00000308508 HIBCHQ6NVY1 386 aaPredicted RBP15.08■□□□□ 0
CSPG4-201ENST00000308508 EYA2O00167 538 aa15.08■□□□□ 0
CSPG4-201ENST00000308508 CPP00450 1065 aa15.08■□□□□ 0
CSPG4-201ENST00000308508 RETREG2Q8NC44 543 aa15.08■□□□□ 0
CSPG4-201ENST00000308508 FBXL13Q8NEE6 735 aa15.08■□□□□ 0
CSPG4-201ENST00000308508 NVLO15381 856 aaKnown RBP15.07■□□□□ 0
CSPG4-201ENST00000308508 TADA3O75528 432 aa15.07■□□□□ 0
CSPG4-201ENST00000308508 KIF1CO43896 1103 aaKnown RBP15.07■□□□□ 0
CSPG4-201ENST00000308508 C10orf76Q5T2E6 689 aa15.07■□□□□ 0
CSPG4-201ENST00000308508 TRMT10CQ7L0Y3 403 aaKnown RBP15.07■□□□□ 0
CSPG4-201ENST00000308508 PBKQ96KB5 322 aa15.07■□□□□ 0
CSPG4-201ENST00000308508 PTPROQ16827 1216 aa15.07■□□□□ 0
CSPG4-201ENST00000308508 GRAMD1BQ3KR37 738 aa15.07■□□□□ 0
CSPG4-201ENST00000308508 DEPTORQ8TB45 409 aa15.07■□□□□ 0
CSPG4-201ENST00000308508 FLT4P35916 1363 aa15.07■□□□□ 0
CSPG4-201ENST00000308508 BPIFB4P59827 614 aa15.07■□□□□ 0
CSPG4-201ENST00000308508 ADGRL1O94910 1474 aa15.07■□□□□ 0
CSPG4-201ENST00000308508 AOC3Q16853 763 aa15.07■□□□□ 0
CSPG4-201ENST00000308508 USH1GQ495M9 461 aa15.07■□□□□ 0
CSPG4-201ENST00000308508 ICE2Q659A1 982 aa15.07■□□□□ 0
CSPG4-201ENST00000308508 JDP2Q8WYK2 163 aa15.07■□□□□ 0
CSPG4-201ENST00000308508 XAGE2Q96GT9 111 aa15.07■□□□□ 0
CSPG4-201ENST00000308508 TPCN1Q9ULQ1 816 aa15.07■□□□□ 0
CSPG4-201ENST00000308508 ME3Q16798 604 aa15.07■□□□□ 0
CSPG4-201ENST00000308508 FAM186BQ8IYM0 893 aa15.07■□□□□ 0
CSPG4-201ENST00000308508 ZBTB12Q9Y330 459 aaPredicted RBP15.06■□□□□ 0
CSPG4-201ENST00000308508 E7EWF7 191 aa15.06■□□□□ 0
CSPG4-201ENST00000308508 PYGBP11216 843 aa15.06■□□□□ 0
CSPG4-201ENST00000308508 EIF6P56537 245 aaKnown RBP15.06■□□□□ 0
CSPG4-201ENST00000308508 INTUQ9ULD6 942 aa15.06■□□□□ 0
CSPG4-201ENST00000308508 ECEL1O95672 775 aa15.06■□□□□ 0
CSPG4-201ENST00000308508 HSPA6P17066 643 aa15.06■□□□□ 0
CSPG4-201ENST00000308508 EXOC3L4Q17RC7 722 aa15.06■□□□□ 0
CSPG4-201ENST00000308508 TCP11X2Q5H9J9 407 aa15.06■□□□□ 0
CSPG4-201ENST00000308508 MYO1FO00160 1098 aa15.06■□□□□ 0
CSPG4-201ENST00000308508 LIG4P49917 911 aa15.06■□□□□ 0
CSPG4-201ENST00000308508 EIF4A2Q14240 407 aaKnown RBP15.06■□□□□ 0
CSPG4-201ENST00000308508 C6orf118Q5T5N4 469 aa15.06■□□□□ 0
CSPG4-201ENST00000308508 CAPN11Q9UMQ6 739 aa15.06■□□□□ 0
CSPG4-201ENST00000308508 ARHGDIAP52565 204 aa15.06■□□□□ 0
CSPG4-201ENST00000308508 COPB1P53618 953 aaKnown RBP15.06■□□□□ 0
CSPG4-201ENST00000308508 RBM17Q96I25 401 aaKnown RBP15.06■□□□□ 0
CSPG4-201ENST00000308508 SGO2Q562F6 1265 aa15.06■□□□□ 0
CSPG4-201ENST00000308508 PPP1R2P3Q6NXS1 205 aa15.06■□□□□ 0
CSPG4-201ENST00000308508 PDXDC1Q6P996 788 aa15.06■□□□□ 0
CSPG4-201ENST00000308508 GIPC2Q8TF65 315 aa15.06■□□□□ 0
CSPG4-201ENST00000308508 IFT140Q96RY7 1462 aa15.06■□□□□ 0
CSPG4-201ENST00000308508 CHUKO15111 745 aa15.06■□□□□ 0
CSPG4-201ENST00000308508 DMP1Q13316 513 aaPredicted RBP15.06■□□□□ 0
CSPG4-201ENST00000308508 GALNT17Q6IS24 598 aa15.06■□□□□ 0
CSPG4-201ENST00000308508 NFATC2IPQ8NCF5 419 aa15.06■□□□□ 0
CSPG4-201ENST00000308508 HESX1Q9UBX0 185 aa15.06■□□□□ 0
CSPG4-201ENST00000308508 CCPG1Q9ULG6 757 aa15.06■□□□□ 0
CSPG4-201ENST00000308508 ADCY2Q08462 1091 aa15.05■□□□□ 0
CSPG4-201ENST00000308508 NAA35Q5VZE5 725 aa15.05■□□□□ 0
CSPG4-201ENST00000308508 TADA2BQ86TJ2 420 aa15.05■□□□□ 0
CSPG4-201ENST00000308508 CHMP6Q96FZ7 201 aa15.05■□□□□ 0
CSPG4-201ENST00000308508 FMO2Q99518 471 aa15.05■□□□□ 0
CSPG4-201ENST00000308508 MYL10Q9BUA6 226 aa15.05■□□□□ 0
CSPG4-201ENST00000308508 CUL1Q13616 776 aa15.05■□□□□ 0
CSPG4-201ENST00000308508 TSPYL6Q8N831 410 aa15.05■□□□□ 0
CSPG4-201ENST00000308508 RIMS2Q9UQ26 1411 aa15.05■□□□□ 0
CSPG4-201ENST00000308508 MCF2LO15068 1137 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms