RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 FERMT2Q96AC1 680 aa17.01■□□□□ 0.31
SHH-201ENST00000297261 CTNNA1P35221 906 aaKnown RBP17.01■□□□□ 0.31
SHH-201ENST00000297261 EIF6P56537 245 aaKnown RBP17.01■□□□□ 0.31
SHH-201ENST00000297261 KIF23Q02241 960 aaPredicted RBP17.01■□□□□ 0.31
SHH-201ENST00000297261 MECOMQ03112 1051 aa17.01■□□□□ 0.31
SHH-201ENST00000297261 TSGA10IPQ3SY00 556 aa17.01■□□□□ 0.31
SHH-201ENST00000297261 RC3H1Q5TC82 1133 aaKnown RBP17.01■□□□□ 0.31
SHH-201ENST00000297261 LRP10Q7Z4F1 713 aa17.01■□□□□ 0.31
SHH-201ENST00000297261 DAAM2Q86T65 1068 aa17.01■□□□□ 0.31
SHH-201ENST00000297261 RPAINQ86UA6 219 aa17.01■□□□□ 0.31
SHH-201ENST00000297261 FANCBQ8NB91 859 aa17.01■□□□□ 0.31
SHH-201ENST00000297261 FLAD1Q8NFF5 587 aa17.01■□□□□ 0.31
SHH-201ENST00000297261 TBC1D5Q92609 795 aa17.01■□□□□ 0.31
SHH-201ENST00000297261 CLTAP09496 248 aa17■□□□□ 0.31
SHH-201ENST00000297261 TNNI2P48788 182 aa17■□□□□ 0.31
SHH-201ENST00000297261 DCAF17Q5H9S7 520 aaPredicted RBP17■□□□□ 0.31
SHH-201ENST00000297261 C6orf163Q5TEZ5 329 aa17■□□□□ 0.31
SHH-201ENST00000297261 SWAP70Q9UH65 585 aa17■□□□□ 0.31
SHH-201ENST00000297261 RXRBP28702 533 aa17■□□□□ 0.31
SHH-201ENST00000297261 SETDB1Q15047 1291 aa17■□□□□ 0.31
SHH-201ENST00000297261 TADA2BQ86TJ2 420 aa17■□□□□ 0.31
SHH-201ENST00000297261 TBC1D31Q96DN5 1066 aa17■□□□□ 0.31
SHH-201ENST00000297261 ABCC12Q96J65 1359 aa17■□□□□ 0.31
SHH-201ENST00000297261 PRDX5P30044 214 aa17■□□□□ 0.31
SHH-201ENST00000297261 GUCY2DQ02846 1103 aa17■□□□□ 0.31
SHH-201ENST00000297261 OGFOD1Q8N543 542 aa17■□□□□ 0.31
SHH-201ENST00000297261 PLVAPQ9BX97 442 aa17■□□□□ 0.31
SHH-201ENST00000297261 VEZTQ9HBM0 779 aa17■□□□□ 0.31
SHH-201ENST00000297261 BBOX1O75936 387 aa17■□□□□ 0.31
SHH-201ENST00000297261 CCZ1BP86790 482 aa17■□□□□ 0.31
SHH-201ENST00000297261 CCZ1P86791 482 aaPredicted RBP17■□□□□ 0.31
SHH-201ENST00000297261 CALCOCO2Q13137 446 aa17■□□□□ 0.31
SHH-201ENST00000297261 DIXDC1Q155Q3 683 aa17■□□□□ 0.31
SHH-201ENST00000297261 SV2BQ7L1I2 683 aa17■□□□□ 0.31
SHH-201ENST00000297261 DYMQ7RTS9 669 aa17■□□□□ 0.31
SHH-201ENST00000297261 IFT74Q96LB3 600 aa17■□□□□ 0.31
SHH-201ENST00000297261 SH2B2O14492 632 aaPredicted RBP16.99■□□□□ 0.31
SHH-201ENST00000297261 BTDP43251 543 aa16.99■□□□□ 0.31
SHH-201ENST00000297261 COPB1P53618 953 aaKnown RBP16.99■□□□□ 0.31
SHH-201ENST00000297261 ATP11AP98196 1134 aa16.99■□□□□ 0.31
SHH-201ENST00000297261 RPS6KA1Q15418 735 aa16.99■□□□□ 0.31
SHH-201ENST00000297261 MMS22LQ6ZRQ5 1243 aa16.99■□□□□ 0.31
SHH-201ENST00000297261 INTS8Q75QN2 995 aaKnown RBP16.99■□□□□ 0.31
SHH-201ENST00000297261 WDR24Q96S15 920 aa16.99■□□□□ 0.31
SHH-201ENST00000297261 PPEF1O14829 653 aaPredicted RBP16.99■□□□□ 0.31
SHH-201ENST00000297261 TADA3O75528 432 aa16.99■□□□□ 0.31
SHH-201ENST00000297261 SF3B3Q15393 1217 aaKnown RBP16.99■□□□□ 0.31
SHH-201ENST00000297261 CCDC170Q8IYT3 715 aa16.99■□□□□ 0.31
SHH-201ENST00000297261 IRX2Q9BZI1 471 aaPredicted RBP16.99■□□□□ 0.31
SHH-201ENST00000297261 MAN1B1Q9UKM7 699 aa16.99■□□□□ 0.31
SHH-201ENST00000297261 STK38LQ9Y2H1 464 aa16.99■□□□□ 0.31
SHH-201ENST00000297261 HYOU1Q9Y4L1 999 aa16.99■□□□□ 0.31
SHH-201ENST00000297261 RPAP1Q9BWH6 1393 aaPredicted RBP16.99■□□□□ 0.31
SHH-201ENST00000297261 CCDC160A6NGH7 325 aa16.99■□□□□ 0.31
SHH-201ENST00000297261 CXCR5P32302 372 aa16.99■□□□□ 0.31
SHH-201ENST00000297261 IQCB1Q15051 598 aa16.99■□□□□ 0.31
SHH-201ENST00000297261 ATP8A2Q9NTI2 1148 aa16.99■□□□□ 0.31
SHH-201ENST00000297261 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.99■□□□□ 0.31
SHH-201ENST00000297261 RGPD1P0DJD0 1748 aa16.99■□□□□ 0.31
SHH-201ENST00000297261 TCP1P17987 556 aaKnown RBP16.98■□□□□ 0.31
SHH-201ENST00000297261 MXRA7P84157 204 aa16.98■□□□□ 0.31
SHH-201ENST00000297261 FAM84BQ96KN1 310 aaPredicted RBP16.98■□□□□ 0.31
SHH-201ENST00000297261 C6orf50Q9HD87 102 aa16.98■□□□□ 0.31
SHH-201ENST00000297261 ODF2LQ9ULJ1 636 aa16.98■□□□□ 0.31
SHH-201ENST00000297261 CLGNO14967 610 aa16.98■□□□□ 0.31
SHH-201ENST00000297261 ADRA2BP18089 450 aa16.98■□□□□ 0.31
SHH-201ENST00000297261 MCTP2Q6DN12 878 aa16.98■□□□□ 0.31
SHH-201ENST00000297261 UTP11Q9Y3A2 253 aaKnown RBP16.98■□□□□ 0.31
SHH-201ENST00000297261 CNTNAP4Q9C0A0 1308 aa16.98■□□□□ 0.31
SHH-201ENST00000297261 A0A0G2JLW4 131 aa16.98■□□□□ 0.31
SHH-201ENST00000297261 ERCC5P28715 1186 aaPredicted RBP16.98■□□□□ 0.31
SHH-201ENST00000297261 GJC1P36383 396 aa16.98■□□□□ 0.31
SHH-201ENST00000297261 CCDC84Q86UT8 332 aaPredicted RBP16.98■□□□□ 0.31
SHH-201ENST00000297261 VSIG1Q86XK7 387 aa16.98■□□□□ 0.31
SHH-201ENST00000297261 PARP1P09874 1014 aaKnown RBP16.98■□□□□ 0.31
SHH-201ENST00000297261 DNM2P50570 870 aa16.98■□□□□ 0.31
SHH-201ENST00000297261 SCNN1DP51172 638 aa16.98■□□□□ 0.31
SHH-201ENST00000297261 PPP2R5BQ15173 497 aa16.98■□□□□ 0.31
SHH-201ENST00000297261 GKAP1Q5VSY0 366 aaPredicted RBP16.98■□□□□ 0.31
SHH-201ENST00000297261 FMNL3Q8IVF7 1028 aa16.98■□□□□ 0.31
SHH-201ENST00000297261 FMR1NBQ8N0W7 255 aaPredicted RBP16.98■□□□□ 0.31
SHH-201ENST00000297261 ENOX1Q8TC92 643 aaKnown RBP16.98■□□□□ 0.31
SHH-201ENST00000297261 CSRNP2Q9H175 543 aa16.98■□□□□ 0.31
SHH-201ENST00000297261 PRPHP41219 470 aa16.97■□□□□ 0.31
SHH-201ENST00000297261 KLHL30Q0D2K2 578 aa16.97■□□□□ 0.31
SHH-201ENST00000297261 TXNRD1Q16881 649 aa16.97■□□□□ 0.31
SHH-201ENST00000297261 DHX40Q8IX18 779 aaKnown RBP16.97■□□□□ 0.31
SHH-201ENST00000297261 TXKP42681 527 aa16.97■□□□□ 0.31
SHH-201ENST00000297261 CNNM4Q6P4Q7 775 aa16.97■□□□□ 0.31
SHH-201ENST00000297261 RRP36Q96EU6 259 aaKnown RBP16.97■□□□□ 0.31
SHH-201ENST00000297261 NKIRAS1Q9NYS0 192 aa16.97■□□□□ 0.31
SHH-201ENST00000297261 NEDD4P46934 1319 aa16.97■□□□□ 0.31
SHH-201ENST00000297261 SRLQ86TD4 932 aa16.97■□□□□ 0.31
SHH-201ENST00000297261 MB21D2Q8IYB1 491 aaPredicted RBP16.97■□□□□ 0.31
SHH-201ENST00000297261 FEZ2Q9UHY8 353 aaPredicted RBP16.97■□□□□ 0.31
SHH-201ENST00000297261 HDAC9Q9UKV0 1011 aa16.97■□□□□ 0.31
SHH-201ENST00000297261 PPP6R2O75170 966 aa16.96■□□□□ 0.31
SHH-201ENST00000297261 CYP27A1Q02318 531 aa16.96■□□□□ 0.31
SHH-201ENST00000297261 TCP10Q12799 353 aa16.96■□□□□ 0.31
SHH-201ENST00000297261 MGARPQ8TDB4 240 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms