RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 IL6STP40189 918 aaPredicted RBP17.13■□□□□ 0.33
UPF1-204ENST00000596842 DTHD1Q6ZMT9 781 aa17.13■□□□□ 0.33
UPF1-204ENST00000596842 MKNK2Q9HBH9 465 aa17.13■□□□□ 0.33
UPF1-204ENST00000596842 AGPAT5Q9NUQ2 364 aa17.13■□□□□ 0.33
UPF1-204ENST00000596842 C4AP0C0L4 1744 aa17.13■□□□□ 0.33
UPF1-204ENST00000596842 C4BP0C0L5 1744 aa17.13■□□□□ 0.33
UPF1-204ENST00000596842 USP17L8P0C7I0 530 aa17.12■□□□□ 0.33
UPF1-204ENST00000596842 ZNHIT6Q9NWK9 470 aaKnown RBP17.12■□□□□ 0.33
UPF1-204ENST00000596842 PNPLA7Q6ZV29 1317 aa17.12■□□□□ 0.33
UPF1-204ENST00000596842 GTPBP6O43824 516 aaPredicted RBP17.12■□□□□ 0.33
UPF1-204ENST00000596842 ATP2C1P98194 919 aaPredicted RBP17.12■□□□□ 0.33
UPF1-204ENST00000596842 TBC1D8BQ0IIM8 1120 aa17.12■□□□□ 0.33
UPF1-204ENST00000596842 C3orf67Q6ZVT6 689 aa17.12■□□□□ 0.33
UPF1-204ENST00000596842 CSGALNACT2Q8N6G5 542 aa17.12■□□□□ 0.33
UPF1-204ENST00000596842 ANKRD13CQ8N6S4 541 aa17.12■□□□□ 0.33
UPF1-204ENST00000596842 OR8K1Q8NGG5 319 aa17.12■□□□□ 0.33
UPF1-204ENST00000596842 SMCR8Q8TEV9 937 aaPredicted RBP17.12■□□□□ 0.33
UPF1-204ENST00000596842 RBM28Q9NW13 759 aaKnown RBP17.12■□□□□ 0.33
UPF1-204ENST00000596842 CLGNO14967 610 aa17.12■□□□□ 0.33
UPF1-204ENST00000596842 BMP15O95972 392 aa17.12■□□□□ 0.33
UPF1-204ENST00000596842 MNAT1P51948 309 aa17.12■□□□□ 0.33
UPF1-204ENST00000596842 TFAP4Q01664 338 aa17.12■□□□□ 0.33
UPF1-204ENST00000596842 ATP2B2Q01814 1243 aa17.12■□□□□ 0.33
UPF1-204ENST00000596842 SPAG1Q07617 926 aa17.12■□□□□ 0.33
UPF1-204ENST00000596842 STIM1Q13586 685 aa17.12■□□□□ 0.33
UPF1-204ENST00000596842 LETM2Q2VYF4 491 aa17.12■□□□□ 0.33
UPF1-204ENST00000596842 FAM212AQ96EL1 285 aa17.12■□□□□ 0.33
UPF1-204ENST00000596842 MMS19Q96T76 1030 aa17.12■□□□□ 0.33
UPF1-204ENST00000596842 FAM204AQ9H8W3 233 aa17.12■□□□□ 0.33
UPF1-204ENST00000596842 LRRIQ3A6PVS8 624 aaPredicted RBP17.11■□□□□ 0.33
UPF1-204ENST00000596842 USP5P45974 858 aa17.11■□□□□ 0.33
UPF1-204ENST00000596842 MYH8P13535 1937 aa17.11■□□□□ 0.33
UPF1-204ENST00000596842 ATRNO75882 1429 aa17.11■□□□□ 0.33
UPF1-204ENST00000596842 ZPR1O75312 459 aa17.11■□□□□ 0.33
UPF1-204ENST00000596842 ASIC1P78348 528 aa17.11■□□□□ 0.33
UPF1-204ENST00000596842 CCDC96Q2M329 555 aa17.11■□□□□ 0.33
UPF1-204ENST00000596842 ERFEQ4G0M1 354 aa17.11■□□□□ 0.33
UPF1-204ENST00000596842 KRT26Q7Z3Y9 468 aa17.11■□□□□ 0.33
UPF1-204ENST00000596842 CCDC87Q9NVE4 849 aa17.11■□□□□ 0.33
UPF1-204ENST00000596842 RWDD2AQ9UIY3 292 aa17.11■□□□□ 0.33
UPF1-204ENST00000596842 CXCR5P32302 372 aa17.11■□□□□ 0.33
UPF1-204ENST00000596842 ZNF658Q5TYW1 1059 aaPredicted RBP17.11■□□□□ 0.33
UPF1-204ENST00000596842 SH3RF1Q7Z6J0 888 aa17.11■□□□□ 0.33
UPF1-204ENST00000596842 TMEM60Q9H2L4 133 aa17.11■□□□□ 0.33
UPF1-204ENST00000596842 SAP30BPQ9UHR5 308 aaKnown RBP17.11■□□□□ 0.33
UPF1-204ENST00000596842 FAM205AQ6ZU69 1335 aa17.11■□□□□ 0.33
UPF1-204ENST00000596842 USP17L3A6NCW0 530 aa17.1■□□□□ 0.33
UPF1-204ENST00000596842 USP17L4A6NCW7 530 aa17.1■□□□□ 0.33
UPF1-204ENST00000596842 POTEB2H3BUK9 544 aa17.1■□□□□ 0.33
UPF1-204ENST00000596842 IDEP14735 1019 aa17.1■□□□□ 0.33
UPF1-204ENST00000596842 ARHGAP25P42331 645 aa17.1■□□□□ 0.33
UPF1-204ENST00000596842 USP17L1Q7RTZ2 530 aa17.1■□□□□ 0.33
UPF1-204ENST00000596842 BLIDQ8IZY5 108 aa17.1■□□□□ 0.33
UPF1-204ENST00000596842 JAKMIP2Q96AA8 810 aa17.1■□□□□ 0.33
UPF1-204ENST00000596842 L1RE1Q9UN81 338 aa17.1■□□□□ 0.33
UPF1-204ENST00000596842 SAR1BQ9Y6B6 198 aa17.1■□□□□ 0.33
UPF1-204ENST00000596842 SPEF2Q9C093 1822 aa17.1■□□□□ 0.33
UPF1-204ENST00000596842 PSMA7O14818 248 aa17.1■□□□□ 0.33
UPF1-204ENST00000596842 PBX1P40424 430 aa17.1■□□□□ 0.33
UPF1-204ENST00000596842 DZIP1Q86YF9 867 aaKnown RBP17.1■□□□□ 0.33
UPF1-204ENST00000596842 SLC44A5Q8NCS7 719 aa17.1■□□□□ 0.33
UPF1-204ENST00000596842 CELF1Q92879 486 aaKnown RBP17.1■□□□□ 0.33
UPF1-204ENST00000596842 RIOK1Q9BRS2 568 aaKnown RBP17.1■□□□□ 0.33
UPF1-204ENST00000596842 FEZ2Q9UHY8 353 aaPredicted RBP17.1■□□□□ 0.33
UPF1-204ENST00000596842 FAM170AA1A519 330 aa17.1■□□□□ 0.33
UPF1-204ENST00000596842 TULP1O00294 542 aaPredicted RBP17.1■□□□□ 0.33
UPF1-204ENST00000596842 MECOMQ03112 1051 aa17.1■□□□□ 0.33
UPF1-204ENST00000596842 FUT2Q10981 343 aa17.1■□□□□ 0.33
UPF1-204ENST00000596842 TTC19Q6DKK2 380 aaPredicted RBP17.1■□□□□ 0.33
UPF1-204ENST00000596842 CRACR2AQ9BSW2 395 aa17.1■□□□□ 0.33
UPF1-204ENST00000596842 FAM207AQ9NSI2 230 aaPredicted RBP17.1■□□□□ 0.33
UPF1-204ENST00000596842 RMND1Q9NWS8 449 aa17.1■□□□□ 0.33
UPF1-204ENST00000596842 CNTNAP5Q8WYK1 1306 aa17.1■□□□□ 0.33
UPF1-204ENST00000596842 GOLGB1Q14789 3259 aaKnown RBP17.09■□□□□ 0.33
UPF1-204ENST00000596842 PDE4DQ08499 809 aa17.09■□□□□ 0.33
UPF1-204ENST00000596842 C2orf54Q08AI8 447 aa17.09■□□□□ 0.33
UPF1-204ENST00000596842 CRNKL1Q9BZJ0 848 aaKnown RBP17.09■□□□□ 0.33
UPF1-204ENST00000596842 MYH2Q9UKX2 1941 aa17.09■□□□□ 0.33
UPF1-204ENST00000596842 MYH7P12883 1935 aa17.09■□□□□ 0.33
UPF1-204ENST00000596842 CALM1P0DP23 149 aa17.09■□□□□ 0.33
UPF1-204ENST00000596842 CALM2P0DP24 149 aa17.09■□□□□ 0.33
UPF1-204ENST00000596842 CALM3P0DP25 149 aa17.09■□□□□ 0.33
UPF1-204ENST00000596842 ACTN2P35609 894 aa17.09■□□□□ 0.33
UPF1-204ENST00000596842 EXOC4Q96A65 974 aa17.09■□□□□ 0.33
UPF1-204ENST00000596842 TANGO6Q9C0B7 1094 aa17.09■□□□□ 0.33
UPF1-204ENST00000596842 GBP3Q9H0R5 595 aa17.09■□□□□ 0.33
UPF1-204ENST00000596842 POLD4Q9HCU8 107 aa17.09■□□□□ 0.33
UPF1-204ENST00000596842 SMARCAL1Q9NZC9 954 aa17.09■□□□□ 0.33
UPF1-204ENST00000596842 ERVV-1B6SEH8 477 aa17.09■□□□□ 0.33
UPF1-204ENST00000596842 MYO1CO00159 1063 aa17.09■□□□□ 0.33
UPF1-204ENST00000596842 WHAMMP3Q1A5X7 153 aa17.09■□□□□ 0.33
UPF1-204ENST00000596842 PDXDC2PQ6P474 469 aa17.09■□□□□ 0.33
UPF1-204ENST00000596842 ELOA2Q8IYF1 753 aaPredicted RBP17.09■□□□□ 0.33
UPF1-204ENST00000596842 CCDC51Q96ER9 411 aa17.09■□□□□ 0.33
UPF1-204ENST00000596842 LACRTQ9GZZ8 138 aa17.09■□□□□ 0.33
UPF1-204ENST00000596842 ACBD3Q9H3P7 528 aa17.09■□□□□ 0.33
UPF1-204ENST00000596842 NPY5RQ15761 445 aa17.08■□□□□ 0.33
UPF1-204ENST00000596842 TYW1BQ6NUM6 668 aa17.08■□□□□ 0.33
UPF1-204ENST00000596842 MB21D1Q8N884 522 aa17.08■□□□□ 0.33
UPF1-204ENST00000596842 MMRN2Q9H8L6 949 aa17.08■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms