RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 TTC14Q96N46 770 aa23.69■■□□□ 1.38
SS18-218ENST00000581021 ZSCAN10Q96SZ4 725 aaPredicted RBP23.69■■□□□ 1.38
SS18-218ENST00000581021 APBA2Q99767 749 aa23.69■■□□□ 1.38
SS18-218ENST00000581021 KRT23Q9C075 422 aa23.69■■□□□ 1.38
SS18-218ENST00000581021 FLRT1Q9NZU1 646 aa23.69■■□□□ 1.38
SS18-218ENST00000581021 ISY1Q9ULR0 285 aaKnown RBP23.69■■□□□ 1.38
SS18-218ENST00000581021 CDC45O75419 566 aa23.68■■□□□ 1.38
SS18-218ENST00000581021 HMGCRP04035 888 aa23.68■■□□□ 1.38
SS18-218ENST00000581021 PDHBP11177 359 aa23.68■■□□□ 1.38
SS18-218ENST00000581021 RGS2P41220 211 aa23.68■■□□□ 1.38
SS18-218ENST00000581021 STAT2P52630 851 aa23.68■■□□□ 1.38
SS18-218ENST00000581021 NPLOC4Q8TAT6 608 aa23.68■■□□□ 1.38
SS18-218ENST00000581021 DCAF4Q8WV16 495 aa23.68■■□□□ 1.38
SS18-218ENST00000581021 ANKS1AQ92625 1134 aa23.68■■□□□ 1.38
SS18-218ENST00000581021 SHISA4Q96DD7 197 aa23.68■■□□□ 1.38
SS18-218ENST00000581021 MROH8Q9H579 483 aa23.68■■□□□ 1.38
SS18-218ENST00000581021 CNNM2Q9H8M5 875 aa23.68■■□□□ 1.38
SS18-218ENST00000581021 CWC22Q9HCG8 908 aaKnown RBP23.68■■□□□ 1.38
SS18-218ENST00000581021 TNRC18O15417 2968 aaPredicted RBP23.68■■□□□ 1.38
SS18-218ENST00000581021 ZNF536O15090 1300 aa23.67■■□□□ 1.38
SS18-218ENST00000581021 TNKSO95271 1327 aa23.67■■□□□ 1.38
SS18-218ENST00000581021 FRMPD2Q68DX3 1309 aaPredicted RBP23.67■■□□□ 1.38
SS18-218ENST00000581021 E7EWF7 191 aa23.67■■□□□ 1.38
SS18-218ENST00000581021 SNHG28P0DPA3 235 aa23.67■■□□□ 1.38
SS18-218ENST00000581021 ADORA2AP29274 412 aa23.67■■□□□ 1.38
SS18-218ENST00000581021 NT5C2P49902 561 aa23.67■■□□□ 1.38
SS18-218ENST00000581021 SNAP25P60880 206 aa23.67■■□□□ 1.38
SS18-218ENST00000581021 CCDC96Q2M329 555 aa23.67■■□□□ 1.38
SS18-218ENST00000581021 SNRNP48Q6IEG0 339 aaKnown RBP23.67■■□□□ 1.38
SS18-218ENST00000581021 DGKHQ86XP1 1220 aa23.67■■□□□ 1.38
SS18-218ENST00000581021 TEX13BQ9BXU2 312 aa23.67■■□□□ 1.38
SS18-218ENST00000581021 RAVER2Q9HCJ3 691 aaKnown RBP23.67■■□□□ 1.38
SS18-218ENST00000581021 IVNS1ABPQ9Y6Y0 642 aa23.67■■□□□ 1.38
SS18-218ENST00000581021 ATP2A1O14983 1001 aa23.66■■□□□ 1.38
SS18-218ENST00000581021 PLA2G6O60733 806 aa23.66■■□□□ 1.38
SS18-218ENST00000581021 COBLO75128 1261 aa23.66■■□□□ 1.38
SS18-218ENST00000581021 IGHA2P01877 340 aa23.66■■□□□ 1.38
SS18-218ENST00000581021 HOXC6P09630 235 aa23.66■■□□□ 1.38
SS18-218ENST00000581021 TAL1P17542 331 aaPredicted RBP23.66■■□□□ 1.38
SS18-218ENST00000581021 SEC23AQ15436 765 aa23.66■■□□□ 1.38
SS18-218ENST00000581021 MAP3K21Q5TCX8 1036 aa23.66■■□□□ 1.38
SS18-218ENST00000581021 IQCA1Q86XH1 822 aa23.66■■□□□ 1.38
SS18-218ENST00000581021 CPXCR1Q8N123 301 aa23.66■■□□□ 1.38
SS18-218ENST00000581021 ANO2Q9NQ90 1003 aa23.66■■□□□ 1.38
SS18-218ENST00000581021 PRR12Q9ULL5 1215 aa23.66■■□□□ 1.38
SS18-218ENST00000581021 SLC25A27O95847 323 aa23.65■■□□□ 1.38
SS18-218ENST00000581021 ZKSCAN1P17029 563 aaPredicted RBP23.65■■□□□ 1.38
SS18-218ENST00000581021 SLC16A2P36021 539 aa23.65■■□□□ 1.38
SS18-218ENST00000581021 UBXN2AP68543 259 aa23.65■■□□□ 1.38
SS18-218ENST00000581021 ZNF543Q08ER8 600 aa23.65■■□□□ 1.38
SS18-218ENST00000581021 KIAA1211Q6ZU35 1233 aa23.65■■□□□ 1.38
SS18-218ENST00000581021 FAM160B2Q86V87 743 aa23.65■■□□□ 1.38
SS18-218ENST00000581021 TMEM106CQ9BVX2 250 aa23.65■■□□□ 1.38
SS18-218ENST00000581021 RNF208Q9H0X6 261 aa23.65■■□□□ 1.38
SS18-218ENST00000581021 SENP2Q9HC62 589 aa23.65■■□□□ 1.38
SS18-218ENST00000581021 GPCPD1Q9NPB8 672 aa23.65■■□□□ 1.38
SS18-218ENST00000581021 SLC27A2O14975 620 aa23.64■■□□□ 1.37
SS18-218ENST00000581021 ZBED4O75132 1171 aa23.64■■□□□ 1.37
SS18-218ENST00000581021 ANTXR2P58335 489 aa23.64■■□□□ 1.37
SS18-218ENST00000581021 IKQ13123 557 aaPredicted RBP23.64■■□□□ 1.37
SS18-218ENST00000581021 NECTIN1Q15223 517 aa23.64■■□□□ 1.37
SS18-218ENST00000581021 BTNL9Q6UXG8 535 aa23.64■■□□□ 1.37
SS18-218ENST00000581021 MB21D2Q8IYB1 491 aaPredicted RBP23.64■■□□□ 1.37
SS18-218ENST00000581021 PNMA1Q8ND90 353 aa23.64■■□□□ 1.37
SS18-218ENST00000581021 CHURC1Q8WUH1 139 aa23.64■■□□□ 1.37
SS18-218ENST00000581021 PAK6Q9NQU5 681 aaPredicted RBP23.64■■□□□ 1.37
SS18-218ENST00000581021 STRNO43815 780 aa23.63■■□□□ 1.37
SS18-218ENST00000581021 PRKAR2AP13861 404 aaKnown RBP23.63■■□□□ 1.37
SS18-218ENST00000581021 CREB3L3Q68CJ9 461 aa23.63■■□□□ 1.37
SS18-218ENST00000581021 CHST3Q7LGC8 479 aa23.63■■□□□ 1.37
SS18-218ENST00000581021 ABRAQ8N0Z2 381 aa23.63■■□□□ 1.37
SS18-218ENST00000581021 UBAC1Q9BSL1 405 aa23.63■■□□□ 1.37
SS18-218ENST00000581021 PGK2P07205 417 aa23.62■■□□□ 1.37
SS18-218ENST00000581021 GJB1P08034 283 aa23.62■■□□□ 1.37
SS18-218ENST00000581021 GOLGA8HP0CJ92 632 aa23.62■■□□□ 1.37
SS18-218ENST00000581021 CACNB2Q08289 660 aaPredicted RBP23.62■■□□□ 1.37
SS18-218ENST00000581021 AGBL1Q96MI9 1066 aa23.62■■□□□ 1.37
SS18-218ENST00000581021 CPVLQ9H3G5 476 aa23.62■■□□□ 1.37
SS18-218ENST00000581021 FCER1AP12319 257 aa23.61■■□□□ 1.37
SS18-218ENST00000581021 SLC4A3P48751 1232 aa23.61■■□□□ 1.37
SS18-218ENST00000581021 OAZ1P54368 228 aa23.61■■□□□ 1.37
SS18-218ENST00000581021 MLLT1Q03111 559 aaPredicted RBP23.61■■□□□ 1.37
SS18-218ENST00000581021 TRDNQ13061 729 aa23.61■■□□□ 1.37
SS18-218ENST00000581021 CCDC178Q5BJE1 867 aa23.61■■□□□ 1.37
SS18-218ENST00000581021 SYDE2Q5VT97 1194 aa23.61■■□□□ 1.37
SS18-218ENST00000581021 CCDC174Q6PII3 467 aa23.61■■□□□ 1.37
SS18-218ENST00000581021 NCOA7Q8NI08 942 aa23.61■■□□□ 1.37
SS18-218ENST00000581021 MMP19Q99542 508 aa23.61■■□□□ 1.37
SS18-218ENST00000581021 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.61■■□□□ 1.37
SS18-218ENST00000581021 RANBP17Q9H2T7 1088 aaKnown RBP23.61■■□□□ 1.37
SS18-218ENST00000581021 KAT14Q9H8E8 782 aa23.61■■□□□ 1.37
SS18-218ENST00000581021 COPB2P35606 906 aa23.6■■□□□ 1.37
SS18-218ENST00000581021 GJA8P48165 433 aa23.6■■□□□ 1.37
SS18-218ENST00000581021 RALYLQ86SE5 291 aaKnown RBP23.6■■□□□ 1.37
SS18-218ENST00000581021 DPP9Q86TI2 863 aa23.6■■□□□ 1.37
SS18-218ENST00000581021 TRMT44Q8IYL2 757 aaKnown RBP23.6■■□□□ 1.37
SS18-218ENST00000581021 U2AF1L4Q8WU68 220 aaKnown RBP23.6■■□□□ 1.37
SS18-218ENST00000581021 DEFB118Q96PH6 123 aa23.6■■□□□ 1.37
SS18-218ENST00000581021 GPHNQ9NQX3 736 aaPredicted RBP23.6■■□□□ 1.37
SS18-218ENST00000581021 CCND3P30281 292 aaPredicted RBP23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms