RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 RSRC2Q7L4I2 434 aaKnown RBP25.74■■□□□ 1.71
VPS53-211ENST00000571805 ATRIPQ8WXE1 791 aa25.74■■□□□ 1.71
VPS53-211ENST00000571805 MKNK2Q9HBH9 465 aa25.74■■□□□ 1.71
VPS53-211ENST00000571805 N4BP3O15049 544 aa25.73■■□□□ 1.71
VPS53-211ENST00000571805 COPB1P53618 953 aaKnown RBP25.73■■□□□ 1.71
VPS53-211ENST00000571805 PPP4CP60510 307 aa25.73■■□□□ 1.71
VPS53-211ENST00000571805 SPAG1Q07617 926 aa25.73■■□□□ 1.71
VPS53-211ENST00000571805 CCDC178Q5BJE1 867 aa25.73■■□□□ 1.71
VPS53-211ENST00000571805 TCP11X2Q5H9J9 407 aa25.73■■□□□ 1.71
VPS53-211ENST00000571805 WWC2Q6AWC2 1192 aa25.73■■□□□ 1.71
VPS53-211ENST00000571805 DAGLBQ8NCG7 672 aa25.73■■□□□ 1.71
VPS53-211ENST00000571805 DISC1Q9NRI5 854 aa25.73■■□□□ 1.71
VPS53-211ENST00000571805 ARGLU1Q9NWB6 273 aaPredicted RBP25.73■■□□□ 1.71
VPS53-211ENST00000571805 GDAQ9Y2T3 454 aa25.73■■□□□ 1.71
VPS53-211ENST00000571805 TXLNAP40222 546 aa25.73■■□□□ 1.71
VPS53-211ENST00000571805 STAT6P42226 847 aa25.73■■□□□ 1.71
VPS53-211ENST00000571805 PRCPP42785 496 aa25.73■■□□□ 1.71
VPS53-211ENST00000571805 DIXDC1Q155Q3 683 aa25.73■■□□□ 1.71
VPS53-211ENST00000571805 VPS16Q9H269 839 aa25.73■■□□□ 1.71
VPS53-211ENST00000571805 TMEM60Q9H2L4 133 aa25.73■■□□□ 1.71
VPS53-211ENST00000571805 LZTFL1Q9NQ48 299 aa25.73■■□□□ 1.71
VPS53-211ENST00000571805 MYH8P13535 1937 aa25.72■■□□□ 1.71
VPS53-211ENST00000571805 BTAF1O14981 1849 aa25.72■■□□□ 1.71
VPS53-211ENST00000571805 PNMA6AP0CW24 399 aaPredicted RBP25.72■■□□□ 1.71
VPS53-211ENST00000571805 CCDC12Q8WUD4 166 aaPredicted RBP25.72■■□□□ 1.71
VPS53-211ENST00000571805 ANKIB1Q9P2G1 1089 aa25.72■■□□□ 1.71
VPS53-211ENST00000571805 ZHX1Q9UKY1 873 aaPredicted RBP25.72■■□□□ 1.71
VPS53-211ENST00000571805 LEMD3Q9Y2U8 911 aa25.72■■□□□ 1.71
VPS53-211ENST00000571805 RTCBQ9Y3I0 505 aaKnown RBP25.72■■□□□ 1.71
VPS53-211ENST00000571805 CCDC194A0A1B0GVG4 234 aa25.71■■□□□ 1.71
VPS53-211ENST00000571805 RNF225M0QZC1 329 aaPredicted RBP25.71■■□□□ 1.71
VPS53-211ENST00000571805 DTHD1Q6ZMT9 781 aa25.71■■□□□ 1.71
VPS53-211ENST00000571805 EPC1Q9H2F5 836 aa25.71■■□□□ 1.71
VPS53-211ENST00000571805 PALM3A6NDB9 673 aaPredicted RBP25.71■■□□□ 1.71
VPS53-211ENST00000571805 KCNJ18B7U540 433 aa25.71■■□□□ 1.71
VPS53-211ENST00000571805 TSPY3P0CV98 308 aa25.71■■□□□ 1.71
VPS53-211ENST00000571805 TSPY8P0CW00 308 aa25.71■■□□□ 1.71
VPS53-211ENST00000571805 KCNJ12Q14500 433 aa25.71■■□□□ 1.71
VPS53-211ENST00000571805 GALNT17Q6IS24 598 aa25.71■■□□□ 1.71
VPS53-211ENST00000571805 BARHL2Q9NY43 387 aa25.71■■□□□ 1.71
VPS53-211ENST00000571805 TAB2Q9NYJ8 693 aa25.71■■□□□ 1.71
VPS53-211ENST00000571805 STXBP3O00186 592 aa25.7■■□□□ 1.71
VPS53-211ENST00000571805 GSTO1P78417 241 aa25.7■■□□□ 1.71
VPS53-211ENST00000571805 TERF2Q15554 542 aa25.7■■□□□ 1.71
VPS53-211ENST00000571805 TMCO3Q6UWJ1 677 aa25.7■■□□□ 1.71
VPS53-211ENST00000571805 GPR161Q8N6U8 529 aaKnown RBP25.7■■□□□ 1.71
VPS53-211ENST00000571805 SLC44A5Q8NCS7 719 aa25.7■■□□□ 1.71
VPS53-211ENST00000571805 TGFBRAP1Q8WUH2 860 aa25.7■■□□□ 1.71
VPS53-211ENST00000571805 NAV1Q8NEY1 1877 aa25.7■■□□□ 1.71
VPS53-211ENST00000571805 PP2D1A8MPX8 630 aa25.7■■□□□ 1.7
VPS53-211ENST00000571805 KIF20AO95235 890 aa25.7■■□□□ 1.7
VPS53-211ENST00000571805 BAG3O95817 575 aa25.7■■□□□ 1.7
VPS53-211ENST00000571805 IRF2BP1Q8IU81 584 aa25.7■■□□□ 1.7
VPS53-211ENST00000571805 ZNF444Q8N0Y2 327 aaPredicted RBP25.7■■□□□ 1.7
VPS53-211ENST00000571805 ADSSL1Q8N142 457 aa25.7■■□□□ 1.7
VPS53-211ENST00000571805 TMEM47Q9BQJ4 181 aa25.7■■□□□ 1.7
VPS53-211ENST00000571805 MAPK8IP1Q9UQF2 711 aa25.7■■□□□ 1.7
VPS53-211ENST00000571805 GRAPQ13588 217 aa25.69■■□□□ 1.7
VPS53-211ENST00000571805 NFIXQ14938 502 aa25.69■■□□□ 1.7
VPS53-211ENST00000571805 VPS72Q15906 364 aa25.69■■□□□ 1.7
VPS53-211ENST00000571805 INF2Q27J81 1249 aa25.69■■□□□ 1.7
VPS53-211ENST00000571805 CCDC148Q8NFR7 591 aa25.69■■□□□ 1.7
VPS53-211ENST00000571805 GRAPLQ8TC17 118 aaPredicted RBP25.69■■□□□ 1.7
VPS53-211ENST00000571805 ABHD10Q9NUJ1 306 aa25.69■■□□□ 1.7
VPS53-211ENST00000571805 RASA1P20936 1047 aa25.69■■□□□ 1.7
VPS53-211ENST00000571805 ERVK-24P63145 666 aa25.69■■□□□ 1.7
VPS53-211ENST00000571805 TMTC1Q8IUR5 882 aa25.69■■□□□ 1.7
VPS53-211ENST00000571805 CCNL1Q9UK58 526 aaPredicted RBP25.69■■□□□ 1.7
VPS53-211ENST00000571805 H7C1D1 291 aa25.68■■□□□ 1.7
VPS53-211ENST00000571805 HEATR3Q7Z4Q2 680 aa25.68■■□□□ 1.7
VPS53-211ENST00000571805 ST7Q9NRC1 585 aa25.68■■□□□ 1.7
VPS53-211ENST00000571805 KLRC4O43908 158 aa25.68■■□□□ 1.7
VPS53-211ENST00000571805 PLA2G4AP47712 749 aa25.68■■□□□ 1.7
VPS53-211ENST00000571805 KCNB1Q14721 858 aa25.68■■□□□ 1.7
VPS53-211ENST00000571805 AMOTL1Q8IY63 956 aa25.68■■□□□ 1.7
VPS53-211ENST00000571805 ANKRD20A12PQ8NF67 263 aa25.68■■□□□ 1.7
VPS53-211ENST00000571805 CCSER1Q9C0I3 900 aa25.68■■□□□ 1.7
VPS53-211ENST00000571805 KIF5CO60282 957 aa25.67■■□□□ 1.7
VPS53-211ENST00000571805 RABGGTAQ92696 567 aa25.67■■□□□ 1.7
VPS53-211ENST00000571805 KBTBD4Q9NVX7 518 aa25.67■■□□□ 1.7
VPS53-211ENST00000571805 CDK5RAP2Q96SN8 1893 aa25.67■■□□□ 1.7
VPS53-211ENST00000571805 TRIM14Q14142 442 aa25.67■■□□□ 1.7
VPS53-211ENST00000571805 TEX35Q5T0J7 233 aa25.67■■□□□ 1.7
VPS53-211ENST00000571805 MAPKAPK5Q8IW41 473 aa25.67■■□□□ 1.7
VPS53-211ENST00000571805 RTFDC1Q9BY42 306 aaPredicted RBP25.67■■□□□ 1.7
VPS53-211ENST00000571805 PRPHP41219 470 aa25.66■■□□□ 1.7
VPS53-211ENST00000571805 ACRBPQ8NEB7 543 aa25.66■■□□□ 1.7
VPS53-211ENST00000571805 LRRC15Q8TF66 581 aa25.66■■□□□ 1.7
VPS53-211ENST00000571805 SAP30BPQ9UHR5 308 aaKnown RBP25.66■■□□□ 1.7
VPS53-211ENST00000571805 STX8Q9UNK0 236 aa25.66■■□□□ 1.7
VPS53-211ENST00000571805 TTF2Q9UNY4 1162 aaKnown RBP25.66■■□□□ 1.7
VPS53-211ENST00000571805 TRIM49BA6NDI0 452 aa25.66■■□□□ 1.7
VPS53-211ENST00000571805 LAD1O00515 517 aa25.66■■□□□ 1.7
VPS53-211ENST00000571805 MYL1P05976 194 aa25.66■■□□□ 1.7
VPS53-211ENST00000571805 LDHCP07864 332 aa25.66■■□□□ 1.7
VPS53-211ENST00000571805 PARP1P09874 1014 aaKnown RBP25.66■■□□□ 1.7
VPS53-211ENST00000571805 UBA7P41226 1012 aa25.66■■□□□ 1.7
VPS53-211ENST00000571805 PMS1P54277 932 aaKnown RBP25.66■■□□□ 1.7
VPS53-211ENST00000571805 C15orf52Q6ZUT6 534 aaKnown RBP25.66■■□□□ 1.7
VPS53-211ENST00000571805 ZNF804AQ7Z570 1209 aa25.66■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms