RNA–Protein interactions for RNA: ENST00000538456.3

SMARCA4-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 3

Gene SMARCA4, Length 738 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-206ENST00000538456 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.83■□□□□ 0.28
SMARCA4-206ENST00000538456 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.83■□□□□ 0.28
SMARCA4-206ENST00000538456 MYADML2A6NDP7 307 aa16.83■□□□□ 0.28
SMARCA4-206ENST00000538456 COPB2P35606 906 aa16.83■□□□□ 0.28
SMARCA4-206ENST00000538456 IRX5P78411 483 aaPredicted RBP16.83■□□□□ 0.28
SMARCA4-206ENST00000538456 KCNA10Q16322 511 aa16.83■□□□□ 0.28
SMARCA4-206ENST00000538456 SNRNP48Q6IEG0 339 aaKnown RBP16.83■□□□□ 0.28
SMARCA4-206ENST00000538456 STK11IPQ8N1F8 1099 aa16.83■□□□□ 0.28
SMARCA4-206ENST00000538456 SYMPKQ92797 1274 aaKnown RBP16.83■□□□□ 0.28
SMARCA4-206ENST00000538456 DDX11Q96FC9 970 aa16.83■□□□□ 0.28
SMARCA4-206ENST00000538456 SLF1Q9BQI6 1058 aa16.83■□□□□ 0.28
SMARCA4-206ENST00000538456 TSEN34Q9BSV6 310 aaKnown RBP16.83■□□□□ 0.28
SMARCA4-206ENST00000538456 TEX13BQ9BXU2 312 aa16.83■□□□□ 0.28
SMARCA4-206ENST00000538456 FAM184BQ9ULE4 1060 aa16.83■□□□□ 0.28
SMARCA4-206ENST00000538456 MYH4Q9Y623 1939 aa16.83■□□□□ 0.28
SMARCA4-206ENST00000538456 CTR9Q6PD62 1173 aa16.82■□□□□ 0.28
SMARCA4-206ENST00000538456 TIFAQ96CG3 184 aa16.82■□□□□ 0.28
SMARCA4-206ENST00000538456 TOX2Q96NM4 488 aa16.82■□□□□ 0.28
SMARCA4-206ENST00000538456 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.82■□□□□ 0.286e-10■□□□□ 8.3
SMARCA4-206ENST00000538456 ZNF576Q9H609 170 aa16.82■□□□□ 0.28
SMARCA4-206ENST00000538456 ZBED9Q6R2W3 1325 aa16.81■□□□□ 0.28
SMARCA4-206ENST00000538456 SYNGAP1Q96PV0 1343 aa16.81■□□□□ 0.28
SMARCA4-206ENST00000538456 MOXD2PA6NHM9 499 aa16.81■□□□□ 0.28
SMARCA4-206ENST00000538456 HMMRO75330 724 aa16.81■□□□□ 0.28
SMARCA4-206ENST00000538456 SNAI1O95863 264 aaPredicted RBP16.81■□□□□ 0.28
SMARCA4-206ENST00000538456 TIMP1P01033 207 aa16.81■□□□□ 0.28
SMARCA4-206ENST00000538456 C6orf222P0C671 652 aaPredicted RBP16.81■□□□□ 0.28
SMARCA4-206ENST00000538456 CPXCR1Q8N123 301 aa16.81■□□□□ 0.28
SMARCA4-206ENST00000538456 KLHDC9Q8NEP7 349 aa16.81■□□□□ 0.28
SMARCA4-206ENST00000538456 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.81■□□□□ 0.28
SMARCA4-206ENST00000538456 TBX21Q9UL17 535 aa16.81■□□□□ 0.28
SMARCA4-206ENST00000538456 RIPK3Q9Y572 518 aa16.81■□□□□ 0.28
SMARCA4-206ENST00000538456 GRXCR1A8MXD5 290 aa16.8■□□□□ 0.28
SMARCA4-206ENST00000538456 ADCY6O43306 1168 aa16.8■□□□□ 0.28
SMARCA4-206ENST00000538456 ATP5JP18859 108 aa16.8■□□□□ 0.28
SMARCA4-206ENST00000538456 PBX2P40425 430 aa16.8■□□□□ 0.28
SMARCA4-206ENST00000538456 UBE3CQ15386 1083 aa16.8■□□□□ 0.28
SMARCA4-206ENST00000538456 CCSAPQ6IQ19 270 aaPredicted RBP16.8■□□□□ 0.28
SMARCA4-206ENST00000538456 CCDC129Q6ZRS4 1044 aa16.8■□□□□ 0.28
SMARCA4-206ENST00000538456 SIRT2Q8IXJ6 389 aa16.8■□□□□ 0.28
SMARCA4-206ENST00000538456 MSL3Q8N5Y2 521 aaKnown RBP16.8■□□□□ 0.28
SMARCA4-206ENST00000538456 PPM1EQ8WY54 764 aa16.8■□□□□ 0.28
SMARCA4-206ENST00000538456 VTI1AQ96AJ9 217 aa16.8■□□□□ 0.28
SMARCA4-206ENST00000538456 GLT1D1Q96MS3 346 aa16.8■□□□□ 0.28
SMARCA4-206ENST00000538456 HAUS7Q99871 368 aa16.8■□□□□ 0.28
SMARCA4-206ENST00000538456 PUS7LQ9H0K6 701 aaKnown RBP16.8■□□□□ 0.28
SMARCA4-206ENST00000538456 ARPP21Q9UBL0 812 aaPredicted RBP16.8■□□□□ 0.28
SMARCA4-206ENST00000538456 MROH7Q68CQ1 1323 aa16.79■□□□□ 0.28
SMARCA4-206ENST00000538456 DNAJC25-GNG10A0A024R161 153 aa16.79■□□□□ 0.28
SMARCA4-206ENST00000538456 DUSP11O75319 330 aaKnown RBP16.79■□□□□ 0.28
SMARCA4-206ENST00000538456 NDUFB10O96000 172 aa16.79■□□□□ 0.28
SMARCA4-206ENST00000538456 ASGR1P07306 291 aa16.79■□□□□ 0.28
SMARCA4-206ENST00000538456 TJAP1Q5JTD0 557 aa16.79■□□□□ 0.28
SMARCA4-206ENST00000538456 MFSD5Q6N075 450 aa16.79■□□□□ 0.28
SMARCA4-206ENST00000538456 MAMDC4Q6UXC1 1216 aa16.79■□□□□ 0.28
SMARCA4-206ENST00000538456 RPAP2Q8IXW5 612 aaPredicted RBP16.79■□□□□ 0.28
SMARCA4-206ENST00000538456 KIFC2Q96AC6 838 aa16.79■□□□□ 0.28
SMARCA4-206ENST00000538456 PPP1R12CQ9BZL4 782 aa16.79■□□□□ 0.28
SMARCA4-206ENST00000538456 CTDP1Q9Y5B0 961 aaPredicted RBP16.79■□□□□ 0.28
SMARCA4-206ENST00000538456 GBF1Q92538 1859 aa16.79■□□□□ 0.28
SMARCA4-206ENST00000538456 CHD9Q3L8U1 2897 aa16.78■□□□□ 0.28
SMARCA4-206ENST00000538456 F5H6K3 240 aa16.78■□□□□ 0.28
SMARCA4-206ENST00000538456 RAB11FIP3O75154 756 aa16.78■□□□□ 0.28
SMARCA4-206ENST00000538456 CSF2RAP15509 400 aa16.78■□□□□ 0.28
SMARCA4-206ENST00000538456 RASA1P20936 1047 aa16.78■□□□□ 0.28
SMARCA4-206ENST00000538456 KLRC3Q07444 240 aa16.78■□□□□ 0.28
SMARCA4-206ENST00000538456 PPIGQ13427 754 aaKnown RBP eCLIP16.78■□□□□ 0.282e-10■□□□□ 9.5
SMARCA4-206ENST00000538456 ACVR2BQ13705 512 aa16.78■□□□□ 0.28
SMARCA4-206ENST00000538456 CCDC144BQ3MJ40 725 aa16.78■□□□□ 0.28
SMARCA4-206ENST00000538456 C16orf59Q7L2K0 433 aa16.78■□□□□ 0.28
SMARCA4-206ENST00000538456 PRPF38AQ8NAV1 312 aaKnown RBP16.78■□□□□ 0.28
SMARCA4-206ENST00000538456 PBX4Q9BYU1 374 aa16.78■□□□□ 0.28
SMARCA4-206ENST00000538456 MKNK2Q9HBH9 465 aa16.78■□□□□ 0.28
SMARCA4-206ENST00000538456 RAVER2Q9HCJ3 691 aaKnown RBP16.78■□□□□ 0.28
SMARCA4-206ENST00000538456 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.78■□□□□ 0.28
SMARCA4-206ENST00000538456 ELP1O95163 1332 aa16.77■□□□□ 0.28
SMARCA4-206ENST00000538456 ACRP10323 421 aa16.77■□□□□ 0.28
SMARCA4-206ENST00000538456 CST5P28325 142 aaPredicted RBP16.77■□□□□ 0.28
SMARCA4-206ENST00000538456 GNASQ5JWF2 1037 aa16.77■□□□□ 0.28
SMARCA4-206ENST00000538456 TMEM240Q5SV17 173 aa16.77■□□□□ 0.28
SMARCA4-206ENST00000538456 ZSCAN25Q6NSZ9 544 aa16.77■□□□□ 0.28
SMARCA4-206ENST00000538456 CCDC174Q6PII3 467 aa16.77■□□□□ 0.28
SMARCA4-206ENST00000538456 ANKRD35Q8N283 1001 aa16.77■□□□□ 0.28
SMARCA4-206ENST00000538456 PCSK9Q8NBP7 692 aaKnown RBP16.77■□□□□ 0.28
SMARCA4-206ENST00000538456 GAS2L1Q99501 681 aaPredicted RBP16.77■□□□□ 0.28
SMARCA4-206ENST00000538456 PRDM12Q9H4Q4 367 aa16.77■□□□□ 0.28
SMARCA4-206ENST00000538456 SPC25Q9HBM1 224 aa16.77■□□□□ 0.28
SMARCA4-206ENST00000538456 COG6Q9Y2V7 657 aa16.77■□□□□ 0.28
SMARCA4-206ENST00000538456 A0A0U1RQG5 324 aaPredicted RBP16.76■□□□□ 0.27
SMARCA4-206ENST00000538456 MINDY4BA8MYZ0 360 aa16.76■□□□□ 0.27
SMARCA4-206ENST00000538456 TNFRSF10AO00220 468 aa16.76■□□□□ 0.27
SMARCA4-206ENST00000538456 ZBED4O75132 1171 aa16.76■□□□□ 0.27
SMARCA4-206ENST00000538456 CDK7P50613 346 aa16.76■□□□□ 0.27
SMARCA4-206ENST00000538456 ZNF365Q70YC5 407 aa16.76■□□□□ 0.27
SMARCA4-206ENST00000538456 ARMCX2Q7L311 632 aa16.76■□□□□ 0.27
SMARCA4-206ENST00000538456 ZNF467Q7Z7K2 595 aaPredicted RBP16.76■□□□□ 0.27
SMARCA4-206ENST00000538456 TMEM199Q8N511 208 aa16.76■□□□□ 0.27
SMARCA4-206ENST00000538456 FGD4Q96M96 766 aa16.76■□□□□ 0.27
SMARCA4-206ENST00000538456 ABHD16BQ9H3Z7 469 aa16.76■□□□□ 0.27
SMARCA4-206ENST00000538456 HOMER2Q9NSB8 354 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms