RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 SLC7A5Q01650 507 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 ARID5AQ03989 594 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 GAB4Q2WGN9 574 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 HEATR6Q6AI08 1181 aaKnown RBP3.44□□□□□ -1.86
HMGB1-208ENST00000490788 MPZL3Q6UWV2 235 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 RNF111Q6ZNA4 994 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 WAPLQ7Z5K2 1190 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 TMC3Q7Z5M5 1100 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 ADAT2Q7Z6V5 191 aaKnown RBP3.44□□□□□ -1.86
HMGB1-208ENST00000490788 WFDC3Q8IUB2 231 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 SPPL2CQ8IUH8 684 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 C7orf61Q8IZ16 206 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 C19orf47Q8N9M1 422 aaKnown RBP3.44□□□□□ -1.86
HMGB1-208ENST00000490788 MYLIPQ8WY64 445 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 FAM168AQ92567 244 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 VWCEQ96DN2 955 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 TCTN2Q96GX1 697 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 KIRREL1Q96J84 757 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 PRDM14Q9GZV8 571 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 GBP3Q9H0R5 595 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 GFOD1Q9NXC2 390 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 TCFL5Q9UL49 500 aa3.44□□□□□ -1.86
HMGB1-208ENST00000490788 DNAJC25-GNG10A0A024R161 153 aa3.43□□□□□ -1.86
HMGB1-208ENST00000490788 FKTNO75072 461 aa3.43□□□□□ -1.86
HMGB1-208ENST00000490788 PRAMEF1O95521 474 aa3.43□□□□□ -1.86
HMGB1-208ENST00000490788 ACRP10323 421 aa3.43□□□□□ -1.86
HMGB1-208ENST00000490788 ITGA4P13612 1032 aa3.43□□□□□ -1.86
HMGB1-208ENST00000490788 CHRNEQ04844 493 aa3.43□□□□□ -1.86
HMGB1-208ENST00000490788 SNW1Q13573 536 aaKnown RBP3.43□□□□□ -1.86
HMGB1-208ENST00000490788 SLC14A2Q15849 920 aa3.43□□□□□ -1.86
HMGB1-208ENST00000490788 TNNI3KQ59H18 835 aa3.43□□□□□ -1.86
HMGB1-208ENST00000490788 TMEM67Q5HYA8 995 aa3.43□□□□□ -1.86
HMGB1-208ENST00000490788 ZSWIM9Q86XI8 627 aa3.43□□□□□ -1.86
HMGB1-208ENST00000490788 NAT16Q8N8M0 369 aa3.43□□□□□ -1.86
HMGB1-208ENST00000490788 FLAD1Q8NFF5 587 aa3.43□□□□□ -1.86
HMGB1-208ENST00000490788 ABHD4Q8TB40 342 aa3.43□□□□□ -1.86
HMGB1-208ENST00000490788 CDADC1Q9BWV3 514 aa3.43□□□□□ -1.86
HMGB1-208ENST00000490788 HDAC8Q9BY41 377 aa3.43□□□□□ -1.86
HMGB1-208ENST00000490788 FOXP3Q9BZS1 431 aa3.43□□□□□ -1.86
HMGB1-208ENST00000490788 ADAMTS10Q9H324 1103 aa3.43□□□□□ -1.86
HMGB1-208ENST00000490788 FAM53CQ9NYF3 392 aa3.43□□□□□ -1.86
HMGB1-208ENST00000490788 PRR13Q9NZ81 148 aa3.43□□□□□ -1.86
HMGB1-208ENST00000490788 PPP1R1BQ9UD71 204 aaPredicted RBP3.43□□□□□ -1.86
HMGB1-208ENST00000490788 CTNND2Q9UQB3 1225 aa3.43□□□□□ -1.86
HMGB1-208ENST00000490788 SUGT1Q9Y2Z0 365 aa3.43□□□□□ -1.86
HMGB1-208ENST00000490788 SF3B6Q9Y3B4 125 aaKnown RBP3.43□□□□□ -1.86
HMGB1-208ENST00000490788 NESP48681 1621 aa3.43□□□□□ -1.86
HMGB1-208ENST00000490788 SYNJ2O15056 1496 aa3.42□□□□□ -1.86
HMGB1-208ENST00000490788 A0A1W2PQ27 194 aa3.42□□□□□ -1.86
HMGB1-208ENST00000490788 A0A1W2PQ64 194 aa3.42□□□□□ -1.86
HMGB1-208ENST00000490788 A0A1W2PQC6 194 aa3.42□□□□□ -1.86
HMGB1-208ENST00000490788 A0A1W2PQD8 194 aa3.42□□□□□ -1.86
HMGB1-208ENST00000490788 A0A1W2PQH9 124 aa3.42□□□□□ -1.86
HMGB1-208ENST00000490788 FITM1A5D6W6 292 aa3.42□□□□□ -1.86
HMGB1-208ENST00000490788 C9IYK1 514 aa3.42□□□□□ -1.86
HMGB1-208ENST00000490788 PPM1BO75688 479 aa3.42□□□□□ -1.86
HMGB1-208ENST00000490788 FARP2O94887 1054 aaPredicted RBP3.42□□□□□ -1.86
HMGB1-208ENST00000490788 PAPLNO95428 1278 aa3.42□□□□□ -1.86
HMGB1-208ENST00000490788 GSNP06396 782 aa3.42□□□□□ -1.86
HMGB1-208ENST00000490788 NOP2P46087 812 aaKnown RBP3.42□□□□□ -1.86
HMGB1-208ENST00000490788 ZC3H6P61129 1189 aaKnown RBP3.42□□□□□ -1.86
HMGB1-208ENST00000490788 ZYXQ15942 572 aaKnown RBP3.42□□□□□ -1.86
HMGB1-208ENST00000490788 KRTAP19-4Q3LI73 84 aa3.42□□□□□ -1.86
HMGB1-208ENST00000490788 RALGPS1Q5JS13 557 aa3.42□□□□□ -1.86
HMGB1-208ENST00000490788 DCAF15Q66K64 600 aa3.42□□□□□ -1.86
HMGB1-208ENST00000490788 VHLLQ6RSH7 139 aa3.42□□□□□ -1.86
HMGB1-208ENST00000490788 ANKS4BQ8N8V4 417 aa3.42□□□□□ -1.86
HMGB1-208ENST00000490788 LINC00116Q8NCU8 138 aa3.42□□□□□ -1.86
HMGB1-208ENST00000490788 PDZD8Q8NEN9 1154 aa3.42□□□□□ -1.86
HMGB1-208ENST00000490788 PPP1R14AQ96A00 147 aa3.42□□□□□ -1.86
HMGB1-208ENST00000490788 SHDQ96IW2 340 aa3.42□□□□□ -1.86
HMGB1-208ENST00000490788 ACTR10Q9NZ32 417 aa3.42□□□□□ -1.86
HMGB1-208ENST00000490788 ZNF214Q9UL59 606 aaPredicted RBP3.42□□□□□ -1.86
HMGB1-208ENST00000490788 MRVI1Q9Y6F6 885 aa3.42□□□□□ -1.86
HMGB1-208ENST00000490788 ARAP1Q96P48 1450 aa3.41□□□□□ -1.86
HMGB1-208ENST00000490788 B8ZZF3 427 aa3.41□□□□□ -1.86
HMGB1-208ENST00000490788 GLI1P08151 1106 aa3.41□□□□□ -1.86
HMGB1-208ENST00000490788 CD247P20963 164 aa3.41□□□□□ -1.86
HMGB1-208ENST00000490788 BMP8BP34820 402 aa3.41□□□□□ -1.86
HMGB1-208ENST00000490788 POU4F1Q01851 419 aa3.41□□□□□ -1.86
HMGB1-208ENST00000490788 TEKQ02763 1124 aa3.41□□□□□ -1.86
HMGB1-208ENST00000490788 PPP2R5DQ14738 602 aa3.41□□□□□ -1.86
HMGB1-208ENST00000490788 NCAPHQ15003 741 aa3.41□□□□□ -1.86
HMGB1-208ENST00000490788 ANKRD39Q53RE8 183 aa3.41□□□□□ -1.86
HMGB1-208ENST00000490788 AXDND1Q5T1B0 1012 aaPredicted RBP3.41□□□□□ -1.86
HMGB1-208ENST00000490788 LARP1BQ659C4 914 aaKnown RBP3.41□□□□□ -1.86
HMGB1-208ENST00000490788 KIAA1211LQ6NV74 962 aa3.41□□□□□ -1.86
HMGB1-208ENST00000490788 LILRA2Q8N149 483 aa3.41□□□□□ -1.86
HMGB1-208ENST00000490788 CRACR2BQ8N4Y2 399 aaPredicted RBP3.41□□□□□ -1.86
HMGB1-208ENST00000490788 USHBP1Q8N6Y0 703 aa3.41□□□□□ -1.86
HMGB1-208ENST00000490788 BRF1Q92994 677 aa3.41□□□□□ -1.86
HMGB1-208ENST00000490788 ZDHHC15Q96MV8 337 aa3.41□□□□□ -1.86
HMGB1-208ENST00000490788 SLC38A3Q99624 504 aa3.41□□□□□ -1.86
HMGB1-208ENST00000490788 HAUS7Q99871 368 aa3.41□□□□□ -1.86
HMGB1-208ENST00000490788 NOL6Q9H6R4 1146 aaKnown RBP3.41□□□□□ -1.86
HMGB1-208ENST00000490788 GP6Q9HCN6 339 aa3.41□□□□□ -1.86
HMGB1-208ENST00000490788 WHRNQ9P202 907 aa3.41□□□□□ -1.86
HMGB1-208ENST00000490788 GPR160Q9UJ42 338 aa3.41□□□□□ -1.86
HMGB1-208ENST00000490788 PCDHB10Q9UN67 800 aa3.41□□□□□ -1.86
HMGB1-208ENST00000490788 FHOD1Q9Y613 1164 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms