RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 MSL3Q8N5Y2 521 aaKnown RBP16.8■□□□□ 0.28
VARS-227ENST00000489979 KIF1BPQ96EK5 621 aa16.8■□□□□ 0.28
VARS-227ENST00000489979 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.8■□□□□ 0.282e-7■■■□□ 18.6
VARS-227ENST00000489979 BOLA2Q9H3K6 86 aa16.8■□□□□ 0.28
VARS-227ENST00000489979 PAG1Q9NWQ8 432 aa16.8■□□□□ 0.28
VARS-227ENST00000489979 ZHX1Q9UKY1 873 aaPredicted RBP16.8■□□□□ 0.28
VARS-227ENST00000489979 TBX21Q9UL17 535 aa16.8■□□□□ 0.28
VARS-227ENST00000489979 FAM184BQ9ULE4 1060 aa16.8■□□□□ 0.28
VARS-227ENST00000489979 SYNGAP1Q96PV0 1343 aa16.79■□□□□ 0.28
VARS-227ENST00000489979 MYH7P12883 1935 aa16.79■□□□□ 0.28
VARS-227ENST00000489979 MYADML2A6NDP7 307 aa16.79■□□□□ 0.28
VARS-227ENST00000489979 SNRNP48Q6IEG0 339 aaKnown RBP16.79■□□□□ 0.28
VARS-227ENST00000489979 CCSAPQ6IQ19 270 aaPredicted RBP16.79■□□□□ 0.28
VARS-227ENST00000489979 PANK1Q8TE04 598 aa16.79■□□□□ 0.28
VARS-227ENST00000489979 NUP88Q99567 741 aaPredicted RBP16.79■□□□□ 0.28
VARS-227ENST00000489979 SLF1Q9BQI6 1058 aa16.79■□□□□ 0.28
VARS-227ENST00000489979 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.79■□□□□ 0.28
VARS-227ENST00000489979 SLC4A4Q9Y6R1 1079 aa16.79■□□□□ 0.28
VARS-227ENST00000489979 MCM3APO60318 1980 aa16.78■□□□□ 0.28
VARS-227ENST00000489979 DUSP11O75319 330 aaKnown RBP16.78■□□□□ 0.28
VARS-227ENST00000489979 IRX5P78411 483 aaPredicted RBP16.78■□□□□ 0.28
VARS-227ENST00000489979 PPIGQ13427 754 aaKnown RBP eCLIP16.78■□□□□ 0.283e-8■■■■□ 20.3
VARS-227ENST00000489979 MFSD5Q6N075 450 aa16.78■□□□□ 0.28
VARS-227ENST00000489979 CTR9Q6PD62 1173 aa16.78■□□□□ 0.28
VARS-227ENST00000489979 MAMDC4Q6UXC1 1216 aa16.78■□□□□ 0.28
VARS-227ENST00000489979 DDX11Q96FC9 970 aa16.78■□□□□ 0.28
VARS-227ENST00000489979 DDRGK1Q96HY6 314 aa16.78■□□□□ 0.28
VARS-227ENST00000489979 GLT1D1Q96MS3 346 aa16.78■□□□□ 0.28
VARS-227ENST00000489979 TEX13BQ9BXU2 312 aa16.78■□□□□ 0.28
VARS-227ENST00000489979 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.78■□□□□ 0.283e-9■■□□□ 12.2
VARS-227ENST00000489979 RIPK3Q9Y572 518 aa16.78■□□□□ 0.28
VARS-227ENST00000489979 ELP1O95163 1332 aa16.77■□□□□ 0.28
VARS-227ENST00000489979 MROH7Q68CQ1 1323 aa16.77■□□□□ 0.28
VARS-227ENST00000489979 ZBED9Q6R2W3 1325 aa16.77■□□□□ 0.28
VARS-227ENST00000489979 GREB1LQ9C091 1923 aaPredicted RBP16.77■□□□□ 0.28
VARS-227ENST00000489979 GRXCR1A8MXD5 290 aa16.77■□□□□ 0.28
VARS-227ENST00000489979 TNFRSF10AO00220 468 aa16.77■□□□□ 0.28
VARS-227ENST00000489979 PBX2P40425 430 aa16.77■□□□□ 0.28
VARS-227ENST00000489979 SLC4A3P48751 1232 aa16.77■□□□□ 0.28
VARS-227ENST00000489979 TMEM240Q5SV17 173 aa16.77■□□□□ 0.28
VARS-227ENST00000489979 CCDC129Q6ZRS4 1044 aa16.77■□□□□ 0.28
VARS-227ENST00000489979 C16orf59Q7L2K0 433 aa16.77■□□□□ 0.28
VARS-227ENST00000489979 PPM1EQ8WY54 764 aa16.77■□□□□ 0.28
VARS-227ENST00000489979 VTI1AQ96AJ9 217 aa16.77■□□□□ 0.28
VARS-227ENST00000489979 PBX4Q9BYU1 374 aa16.77■□□□□ 0.28
VARS-227ENST00000489979 DNAJC25-GNG10A0A024R161 153 aa16.76■□□□□ 0.27
VARS-227ENST00000489979 ADCY6O43306 1168 aa16.76■□□□□ 0.27
VARS-227ENST00000489979 ASGR1P07306 291 aa16.76■□□□□ 0.27
VARS-227ENST00000489979 C6orf222P0C671 652 aaPredicted RBP16.76■□□□□ 0.27
VARS-227ENST00000489979 ATP5JP18859 108 aa16.76■□□□□ 0.27
VARS-227ENST00000489979 CST5P28325 142 aaPredicted RBP16.76■□□□□ 0.27
VARS-227ENST00000489979 CDK7P50613 346 aa16.76■□□□□ 0.27
VARS-227ENST00000489979 ACVR2BQ13705 512 aa16.76■□□□□ 0.27
VARS-227ENST00000489979 UBE3CQ15386 1083 aa16.76■□□□□ 0.27
VARS-227ENST00000489979 CCDC174Q6PII3 467 aa16.76■□□□□ 0.27
VARS-227ENST00000489979 PCSK9Q8NBP7 692 aaKnown RBP16.76■□□□□ 0.27
VARS-227ENST00000489979 GAS2L1Q99501 681 aaPredicted RBP16.76■□□□□ 0.27
VARS-227ENST00000489979 F5H6K3 240 aa16.75■□□□□ 0.27
VARS-227ENST00000489979 ARVCFO00192 962 aa16.75■□□□□ 0.27
VARS-227ENST00000489979 ACRP10323 421 aa16.75■□□□□ 0.27
VARS-227ENST00000489979 CSF2RAP15509 400 aa16.75■□□□□ 0.27
VARS-227ENST00000489979 KLRC3Q07444 240 aa16.75■□□□□ 0.27
VARS-227ENST00000489979 RASIP1Q5U651 963 aa16.75■□□□□ 0.27
VARS-227ENST00000489979 ZNF467Q7Z7K2 595 aaPredicted RBP16.75■□□□□ 0.27
VARS-227ENST00000489979 CPXCR1Q8N123 301 aa16.75■□□□□ 0.27
VARS-227ENST00000489979 HAUS7Q99871 368 aa16.75■□□□□ 0.27
VARS-227ENST00000489979 PUS7LQ9H0K6 701 aaKnown RBP16.75■□□□□ 0.27
VARS-227ENST00000489979 PRDM12Q9H4Q4 367 aa16.75■□□□□ 0.27
VARS-227ENST00000489979 SPC25Q9HBM1 224 aa16.75■□□□□ 0.27
VARS-227ENST00000489979 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.75■□□□□ 0.27
VARS-227ENST00000489979 A0A0U1RQG5 324 aaPredicted RBP16.74■□□□□ 0.27
VARS-227ENST00000489979 ZBED4O75132 1171 aa16.74■□□□□ 0.27
VARS-227ENST00000489979 RAB11FIP3O75154 756 aa16.74■□□□□ 0.27
VARS-227ENST00000489979 HMMRO75330 724 aa16.74■□□□□ 0.27
VARS-227ENST00000489979 NDUFB10O96000 172 aa16.74■□□□□ 0.27
VARS-227ENST00000489979 COL9A1P20849 921 aa16.74■□□□□ 0.27
VARS-227ENST00000489979 CCDC144BQ3MJ40 725 aa16.74■□□□□ 0.27
VARS-227ENST00000489979 ZNF365Q70YC5 407 aa16.74■□□□□ 0.27
VARS-227ENST00000489979 SIRT2Q8IXJ6 389 aa16.74■□□□□ 0.27
VARS-227ENST00000489979 RPAP2Q8IXW5 612 aaPredicted RBP16.74■□□□□ 0.27
VARS-227ENST00000489979 STK11IPQ8N1F8 1099 aa16.74■□□□□ 0.27
VARS-227ENST00000489979 TMEM199Q8N511 208 aa16.74■□□□□ 0.27
VARS-227ENST00000489979 PRPF38AQ8NAV1 312 aaKnown RBP16.74■□□□□ 0.27
VARS-227ENST00000489979 PPP1R12CQ9BZL4 782 aa16.74■□□□□ 0.27
VARS-227ENST00000489979 UPF3AQ9H1J1 476 aaKnown RBP16.74■□□□□ 0.27
VARS-227ENST00000489979 ABHD16BQ9H3Z7 469 aa16.74■□□□□ 0.27
VARS-227ENST00000489979 ARPP21Q9UBL0 812 aaPredicted RBP16.74■□□□□ 0.27
VARS-227ENST00000489979 CTDP1Q9Y5B0 961 aaPredicted RBP16.74■□□□□ 0.27
VARS-227ENST00000489979 MYH4Q9Y623 1939 aa16.74■□□□□ 0.27
VARS-227ENST00000489979 ATP2A1O14983 1001 aa16.73■□□□□ 0.27
VARS-227ENST00000489979 RASA1P20936 1047 aa16.73■□□□□ 0.27
VARS-227ENST00000489979 GJA9P57773 515 aa16.73■□□□□ 0.27
VARS-227ENST00000489979 GNASQ5JWF2 1037 aa16.73■□□□□ 0.27
VARS-227ENST00000489979 AKNAD1Q5T1N1 836 aa16.73■□□□□ 0.27
VARS-227ENST00000489979 PSRC1Q6PGN9 363 aaPredicted RBP16.73■□□□□ 0.27
VARS-227ENST00000489979 FAM126BQ8IXS8 530 aa16.73■□□□□ 0.27
VARS-227ENST00000489979 ANKRD35Q8N283 1001 aa16.73■□□□□ 0.27
VARS-227ENST00000489979 FGD4Q96M96 766 aa16.73■□□□□ 0.27
VARS-227ENST00000489979 RAVER2Q9HCJ3 691 aaKnown RBP16.73■□□□□ 0.27
VARS-227ENST00000489979 NYAP2Q9P242 653 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms