RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 HLA-DOAP06340 250 aa17.11■□□□□ 0.33
SHH-201ENST00000297261 PLCG2P16885 1265 aa17.11■□□□□ 0.33
SHH-201ENST00000297261 CASP14P31944 242 aa17.11■□□□□ 0.33
SHH-201ENST00000297261 CETN2P41208 172 aa17.11■□□□□ 0.33
SHH-201ENST00000297261 LINC00116Q8NCU8 138 aa17.11■□□□□ 0.33
SHH-201ENST00000297261 CELF1Q92879 486 aaKnown RBP17.11■□□□□ 0.33
SHH-201ENST00000297261 EPB41L3Q9Y2J2 1087 aaPredicted RBP17.11■□□□□ 0.33
SHH-201ENST00000297261 BTBD18B2RXH4 712 aa17.11■□□□□ 0.33
SHH-201ENST00000297261 TSGA10Q9BZW7 698 aa17.11■□□□□ 0.33
SHH-201ENST00000297261 EFCC1Q9HA90 598 aa17.11■□□□□ 0.33
SHH-201ENST00000297261 BSDC1Q9NW68 430 aaPredicted RBP17.11■□□□□ 0.33
SHH-201ENST00000297261 SARM1Q6SZW1 724 aa17.1■□□□□ 0.33
SHH-201ENST00000297261 FCHSD1Q86WN1 690 aa17.1■□□□□ 0.33
SHH-201ENST00000297261 LINC00301Q8NCQ3 95 aa17.1■□□□□ 0.33
SHH-201ENST00000297261 ZNF142P52746 1687 aaPredicted RBP17.1■□□□□ 0.33
SHH-201ENST00000297261 CMTR1Q8N1G2 835 aaKnown RBP17.1■□□□□ 0.33
SHH-201ENST00000297261 CALM1P0DP23 149 aa17.1■□□□□ 0.33
SHH-201ENST00000297261 CALM2P0DP24 149 aa17.1■□□□□ 0.33
SHH-201ENST00000297261 CALM3P0DP25 149 aa17.1■□□□□ 0.33
SHH-201ENST00000297261 RAPGEF1Q13905 1077 aa17.1■□□□□ 0.33
SHH-201ENST00000297261 CC2D1AQ6P1N0 951 aaPredicted RBP17.1■□□□□ 0.33
SHH-201ENST00000297261 PIK3AP1Q6ZUJ8 805 aa17.1■□□□□ 0.33
SHH-201ENST00000297261 LCORLQ8N3X6 602 aa17.1■□□□□ 0.33
SHH-201ENST00000297261 ABCB6Q9NP58 842 aa17.1■□□□□ 0.33
SHH-201ENST00000297261 KCNK9Q9NPC2 374 aa17.1■□□□□ 0.33
SHH-201ENST00000297261 PRDM4Q9UKN5 801 aa17.1■□□□□ 0.33
SHH-201ENST00000297261 MED1Q15648 1581 aaPredicted RBP17.1■□□□□ 0.33
SHH-201ENST00000297261 BUB1BO60566 1050 aaPredicted RBP17.1■□□□□ 0.33
SHH-201ENST00000297261 HSPA1LP34931 641 aa17.1■□□□□ 0.33
SHH-201ENST00000297261 CASP7P55210 303 aa17.1■□□□□ 0.33
SHH-201ENST00000297261 PDE4DQ08499 809 aa17.1■□□□□ 0.33
SHH-201ENST00000297261 NELFBQ8WX92 580 aa17.1■□□□□ 0.33
SHH-201ENST00000297261 CASP8Q14790 479 aa17.09■□□□□ 0.33
SHH-201ENST00000297261 EPN1Q9Y6I3 576 aaPredicted RBP17.09■□□□□ 0.33
SHH-201ENST00000297261 IKBKBO14920 756 aa17.09■□□□□ 0.33
SHH-201ENST00000297261 ICE2Q659A1 982 aa17.09■□□□□ 0.33
SHH-201ENST00000297261 INTS5Q6P9B9 1019 aaKnown RBP17.09■□□□□ 0.33
SHH-201ENST00000297261 CERKQ8TCT0 537 aa17.09■□□□□ 0.33
SHH-201ENST00000297261 ZNF526Q8TF50 670 aaPredicted RBP17.09■□□□□ 0.33
SHH-201ENST00000297261 NEBLO76041 1014 aa17.09■□□□□ 0.33
SHH-201ENST00000297261 PAK2Q13177 524 aa17.09■□□□□ 0.33
SHH-201ENST00000297261 DPP8Q6V1X1 898 aaPredicted RBP17.09■□□□□ 0.33
SHH-201ENST00000297261 GPHNQ9NQX3 736 aaPredicted RBP17.09■□□□□ 0.33
SHH-201ENST00000297261 UBN2Q6ZU65 1347 aa17.09■□□□□ 0.33
SHH-201ENST00000297261 SOWAHDA6NJG2 315 aa17.08■□□□□ 0.33
SHH-201ENST00000297261 CALML3P27482 149 aa17.08■□□□□ 0.33
SHH-201ENST00000297261 TOB2Q14106 344 aaPredicted RBP17.08■□□□□ 0.33
SHH-201ENST00000297261 EYA3Q99504 573 aa17.08■□□□□ 0.33
SHH-201ENST00000297261 FAM207AQ9NSI2 230 aaPredicted RBP17.08■□□□□ 0.33
SHH-201ENST00000297261 TYW1BQ6NUM6 668 aa17.08■□□□□ 0.32
SHH-201ENST00000297261 MAPKAPK5Q8IW41 473 aa17.08■□□□□ 0.32
SHH-201ENST00000297261 CCDC51Q96ER9 411 aa17.08■□□□□ 0.32
SHH-201ENST00000297261 RPGRIP1Q96KN7 1286 aa17.08■□□□□ 0.32
SHH-201ENST00000297261 MINPP1Q9UNW1 487 aa17.08■□□□□ 0.32
SHH-201ENST00000297261 RFX7Q2KHR2 1363 aa17.08■□□□□ 0.32
SHH-201ENST00000297261 ZNF609O15014 1411 aa17.08■□□□□ 0.32
SHH-201ENST00000297261 DYNLL1P63167 89 aaKnown RBP17.08■□□□□ 0.32
SHH-201ENST00000297261 SLC39A14Q15043 492 aa17.08■□□□□ 0.32
SHH-201ENST00000297261 EFCAB13Q8IY85 973 aa17.08■□□□□ 0.32
SHH-201ENST00000297261 IFIH1Q9BYX4 1025 aaKnown RBP17.08■□□□□ 0.32
SHH-201ENST00000297261 A0A087WUV0 522 aaPredicted RBP17.08■□□□□ 0.32
SHH-201ENST00000297261 FAM47AQ5JRC9 791 aa17.08■□□□□ 0.32
SHH-201ENST00000297261 ANKRD13CQ8N6S4 541 aa17.08■□□□□ 0.32
SHH-201ENST00000297261 TGFBRAP1Q8WUH2 860 aa17.08■□□□□ 0.32
SHH-201ENST00000297261 BCL9O00512 1426 aa17.07■□□□□ 0.32
SHH-201ENST00000297261 SPATA31A6Q5VVP1 1343 aa17.07■□□□□ 0.32
SHH-201ENST00000297261 GRIPAP1Q4V328 841 aa17.07■□□□□ 0.32
SHH-201ENST00000297261 TTC38Q5R3I4 469 aa17.07■□□□□ 0.32
SHH-201ENST00000297261 MFSD14BQ5SR56 506 aa17.07■□□□□ 0.32
SHH-201ENST00000297261 ACRBPQ8NEB7 543 aa17.07■□□□□ 0.32
SHH-201ENST00000297261 MICAL1Q8TDZ2 1067 aa17.07■□□□□ 0.32
SHH-201ENST00000297261 NOX5Q96PH1 765 aa17.07■□□□□ 0.32
SHH-201ENST00000297261 HAUS4Q9H6D7 363 aa17.07■□□□□ 0.32
SHH-201ENST00000297261 VPS54Q9P1Q0 977 aa17.07■□□□□ 0.32
SHH-201ENST00000297261 TRAF5O00463 557 aa17.07■□□□□ 0.32
SHH-201ENST00000297261 TRIM66O15016 1216 aa17.07■□□□□ 0.32
SHH-201ENST00000297261 CCDC172P0C7W6 258 aa17.07■□□□□ 0.32
SHH-201ENST00000297261 NOSTRINQ8IVI9 506 aa17.07■□□□□ 0.32
SHH-201ENST00000297261 CEP104O60308 925 aa17.07■□□□□ 0.32
SHH-201ENST00000297261 NAPAP54920 295 aa17.07■□□□□ 0.32
SHH-201ENST00000297261 SARNPP82979 210 aaKnown RBP17.07■□□□□ 0.32
SHH-201ENST00000297261 KRT71Q3SY84 523 aa17.07■□□□□ 0.32
SHH-201ENST00000297261 VSTM4Q8IW00 320 aa17.07■□□□□ 0.32
SHH-201ENST00000297261 SAMSN1Q9NSI8 373 aaKnown RBP17.07■□□□□ 0.32
SHH-201ENST00000297261 GTF2IP78347 998 aa17.06■□□□□ 0.32
SHH-201ENST00000297261 C2CD5Q86YS7 1000 aa17.06■□□□□ 0.32
SHH-201ENST00000297261 GRAMD1CQ8IYS0 662 aa17.06■□□□□ 0.32
SHH-201ENST00000297261 STRBPQ96SI9 672 aaKnown RBP17.06■□□□□ 0.32
SHH-201ENST00000297261 TACO1Q9BSH4 297 aaKnown RBP17.06■□□□□ 0.32
SHH-201ENST00000297261 GJB4Q9NTQ9 266 aa17.06■□□□□ 0.32
SHH-201ENST00000297261 STK32BQ9NY57 414 aa17.06■□□□□ 0.32
SHH-201ENST00000297261 XDHP47989 1333 aa17.06■□□□□ 0.32
SHH-201ENST00000297261 LACTBP83111 547 aaPredicted RBP17.06■□□□□ 0.32
SHH-201ENST00000297261 HOOK3Q86VS8 718 aa17.06■□□□□ 0.32
SHH-201ENST00000297261 FRMD3A2A2Y4 597 aa17.06■□□□□ 0.32
SHH-201ENST00000297261 GNAQP50148 359 aa17.06■□□□□ 0.32
SHH-201ENST00000297261 CFAP221Q4G0U5 840 aa17.06■□□□□ 0.32
SHH-201ENST00000297261 SPATA1Q5VX52 437 aa17.06■□□□□ 0.32
SHH-201ENST00000297261 RUFY4Q6ZNE9 571 aa17.06■□□□□ 0.32
SHH-201ENST00000297261 SMYD4Q8IYR2 804 aaPredicted RBP17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms