RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 RPS8P62241 208 aaKnown RBP16.88■□□□□ 0.29
CLN3-253ENST00000636977 TERF2Q15554 542 aa16.88■□□□□ 0.29
CLN3-253ENST00000636977 TEX35Q5T0J7 233 aa16.88■□□□□ 0.29
CLN3-253ENST00000636977 RRAGBQ5VZM2 374 aa16.88■□□□□ 0.29
CLN3-253ENST00000636977 MRFAP1Q9Y605 127 aa16.88■□□□□ 0.29
CLN3-253ENST00000636977 SCN7AQ01118 1682 aa16.88■□□□□ 0.29
CLN3-253ENST00000636977 PP2D1A8MPX8 630 aa16.87■□□□□ 0.29
CLN3-253ENST00000636977 CALM1P0DP23 149 aa16.87■□□□□ 0.29
CLN3-253ENST00000636977 CALM2P0DP24 149 aa16.87■□□□□ 0.29
CLN3-253ENST00000636977 CALM3P0DP25 149 aa16.87■□□□□ 0.29
CLN3-253ENST00000636977 HIBADHP31937 336 aaKnown RBP16.87■□□□□ 0.29
CLN3-253ENST00000636977 PLA2G4AP47712 749 aa16.87■□□□□ 0.29
CLN3-253ENST00000636977 CLEC4GQ6UXB4 293 aa16.87■□□□□ 0.29
CLN3-253ENST00000636977 RASGRP2Q7LDG7 609 aa16.87■□□□□ 0.29
CLN3-253ENST00000636977 VPS16Q9H269 839 aa16.87■□□□□ 0.29
CLN3-253ENST00000636977 MCM9Q9NXL9 1143 aa16.87■□□□□ 0.29
CLN3-253ENST00000636977 GDAQ9Y2T3 454 aa16.87■□□□□ 0.29
CLN3-253ENST00000636977 ADGRG1Q9Y653 693 aa16.87■□□□□ 0.29
CLN3-253ENST00000636977 ROBO1Q9Y6N7 1651 aa16.87■□□□□ 0.29
CLN3-253ENST00000636977 CASZ1Q86V15 1759 aa16.87■□□□□ 0.29
CLN3-253ENST00000636977 ORC4O43929 436 aa16.87■□□□□ 0.29
CLN3-253ENST00000636977 PPP2R3AQ06190 1150 aa16.87■□□□□ 0.29
CLN3-253ENST00000636977 PPFIBP1Q86W92 1011 aa16.87■□□□□ 0.29
CLN3-253ENST00000636977 AMIGO3Q86WK7 504 aa16.87■□□□□ 0.29
CLN3-253ENST00000636977 CCDC12Q8WUD4 166 aaPredicted RBP16.87■□□□□ 0.29
CLN3-253ENST00000636977 PLIN2Q99541 437 aa16.87■□□□□ 0.29
CLN3-253ENST00000636977 CRNKL1Q9BZJ0 848 aaKnown RBP16.87■□□□□ 0.29
CLN3-253ENST00000636977 IL17RBQ9NRM6 502 aa16.87■□□□□ 0.29
CLN3-253ENST00000636977 EFCAB8A8MWE9 144 aa16.86■□□□□ 0.29
CLN3-253ENST00000636977 ZRANB2O95218 330 aaKnown RBP eCLIP16.86■□□□□ 0.29
CLN3-253ENST00000636977 GABPB1Q06547 395 aaPredicted RBP16.86■□□□□ 0.29
CLN3-253ENST00000636977 KRT31Q15323 416 aa16.86■□□□□ 0.29
CLN3-253ENST00000636977 PFKFB3Q16875 520 aaPredicted RBP16.86■□□□□ 0.29
CLN3-253ENST00000636977 SLC35G1Q2M3R5 365 aa16.86■□□□□ 0.29
CLN3-253ENST00000636977 GRIK5Q16478 980 aa16.86■□□□□ 0.29
CLN3-253ENST00000636977 PANX2Q96RD6 677 aa16.86■□□□□ 0.29
CLN3-253ENST00000636977 CDCA7Q9BWT1 371 aaPredicted RBP16.86■□□□□ 0.29
CLN3-253ENST00000636977 TAB2Q9NYJ8 693 aa16.86■□□□□ 0.29
CLN3-253ENST00000636977 MFAP3LO75121 409 aa16.86■□□□□ 0.29
CLN3-253ENST00000636977 BMS1Q14692 1282 aaKnown RBP16.86■□□□□ 0.29
CLN3-253ENST00000636977 DHX37Q8IY37 1157 aaKnown RBP16.86■□□□□ 0.29
CLN3-253ENST00000636977 ACRBPQ8NEB7 543 aa16.86■□□□□ 0.29
CLN3-253ENST00000636977 USP17L3A6NCW0 530 aa16.85■□□□□ 0.29
CLN3-253ENST00000636977 USP17L4A6NCW7 530 aa16.85■□□□□ 0.29
CLN3-253ENST00000636977 CCDC175P0C221 793 aa16.85■□□□□ 0.29
CLN3-253ENST00000636977 TFAP4Q01664 338 aa16.85■□□□□ 0.29
CLN3-253ENST00000636977 USP17L1Q7RTZ2 530 aa16.85■□□□□ 0.29
CLN3-253ENST00000636977 C4orf32Q8N8J7 132 aa16.85■□□□□ 0.29
CLN3-253ENST00000636977 IQUBQ8NA54 791 aa16.85■□□□□ 0.29
CLN3-253ENST00000636977 SLC44A5Q8NCS7 719 aa16.85■□□□□ 0.29
CLN3-253ENST00000636977 SRRTQ9BXP5 876 aaKnown RBP16.85■□□□□ 0.29
CLN3-253ENST00000636977 DLEC1Q9Y238 1755 aa16.85■□□□□ 0.29
CLN3-253ENST00000636977 SASH3O75995 380 aa16.85■□□□□ 0.29
CLN3-253ENST00000636977 GPR101Q96P66 508 aaPredicted RBP16.85■□□□□ 0.29
CLN3-253ENST00000636977 NOL10Q9BSC4 688 aaKnown RBP16.85■□□□□ 0.29
CLN3-253ENST00000636977 CPVLQ9H3G5 476 aa16.85■□□□□ 0.29
CLN3-253ENST00000636977 SPATA31A5Q5VU36 1347 aa16.85■□□□□ 0.29
CLN3-253ENST00000636977 SPATA31A7Q8IWB4 1347 aa16.85■□□□□ 0.29
CLN3-253ENST00000636977 TRIM49BA6NDI0 452 aa16.84■□□□□ 0.29
CLN3-253ENST00000636977 N4BP3O15049 544 aa16.84■□□□□ 0.29
CLN3-253ENST00000636977 BMP15O95972 392 aa16.84■□□□□ 0.29
CLN3-253ENST00000636977 ERVK-24P63145 666 aa16.84■□□□□ 0.29
CLN3-253ENST00000636977 TMCO3Q6UWJ1 677 aa16.84■□□□□ 0.29
CLN3-253ENST00000636977 NELFBQ8WX92 580 aa16.84■□□□□ 0.29
CLN3-253ENST00000636977 CCDC34Q96HJ3 373 aa16.84■□□□□ 0.29
CLN3-253ENST00000636977 TMEM60Q9H2L4 133 aa16.84■□□□□ 0.29
CLN3-253ENST00000636977 CCDC66A2RUB6 948 aa16.83■□□□□ 0.29
CLN3-253ENST00000636977 GOLGA6L9A6NEM1 432 aa16.83■□□□□ 0.29
CLN3-253ENST00000636977 DIXDC1Q155Q3 683 aa16.83■□□□□ 0.29
CLN3-253ENST00000636977 FAM98CQ17RN3 349 aaKnown RBP16.83■□□□□ 0.29
CLN3-253ENST00000636977 RSRC2Q7L4I2 434 aaKnown RBP16.83■□□□□ 0.29
CLN3-253ENST00000636977 LRRC15Q8TF66 581 aa16.83■□□□□ 0.29
CLN3-253ENST00000636977 EEF2KMTQ96G04 330 aa16.83■□□□□ 0.29
CLN3-253ENST00000636977 THRAP3Q9Y2W1 955 aaKnown RBP16.83■□□□□ 0.29
CLN3-253ENST00000636977 PRCPP42785 496 aa16.83■□□□□ 0.28
CLN3-253ENST00000636977 PMS1P54277 932 aaKnown RBP16.83■□□□□ 0.28
CLN3-253ENST00000636977 NBPF5PQ86XG9 351 aaPredicted RBP16.83■□□□□ 0.28
CLN3-253ENST00000636977 BLIDQ8IZY5 108 aa16.83■□□□□ 0.28
CLN3-253ENST00000636977 SH3RF3Q8TEJ3 882 aaPredicted RBP16.83■□□□□ 0.28
CLN3-253ENST00000636977 ATP8A2Q9NTI2 1148 aa16.83■□□□□ 0.28
CLN3-253ENST00000636977 PUF60Q9UHX1 559 aaKnown RBP16.83■□□□□ 0.28
CLN3-253ENST00000636977 MYH8P13535 1937 aa16.83■□□□□ 0.28
CLN3-253ENST00000636977 RPN1P04843 607 aaKnown RBP16.83■□□□□ 0.28
CLN3-253ENST00000636977 PCP11498 1178 aaKnown RBP16.83■□□□□ 0.28
CLN3-253ENST00000636977 SLC10A5Q5PT55 438 aa16.83■□□□□ 0.28
CLN3-253ENST00000636977 NLRP3Q96P20 1036 aa16.83■□□□□ 0.28
CLN3-253ENST00000636977 PARD6BQ9BYG5 372 aa16.83■□□□□ 0.28
CLN3-253ENST00000636977 KAT14Q9H8E8 782 aa16.83■□□□□ 0.28
CLN3-253ENST00000636977 GOLGA8HP0CJ92 632 aa16.82■□□□□ 0.28
CLN3-253ENST00000636977 ZNF569Q5MCW4 686 aa16.82■□□□□ 0.28
CLN3-253ENST00000636977 PNMA1Q8ND90 353 aa16.82■□□□□ 0.28
CLN3-253ENST00000636977 SMARCC1Q92922 1105 aaPredicted RBP16.82■□□□□ 0.28
CLN3-253ENST00000636977 ARPP21Q9UBL0 812 aaPredicted RBP16.82■□□□□ 0.28
CLN3-253ENST00000636977 CYTH3O43739 400 aa16.82■□□□□ 0.28
CLN3-253ENST00000636977 GTPBP6O43824 516 aaPredicted RBP16.82■□□□□ 0.28
CLN3-253ENST00000636977 COPB1P53618 953 aaKnown RBP16.82■□□□□ 0.28
CLN3-253ENST00000636977 PAK1Q13153 545 aa16.82■□□□□ 0.28
CLN3-253ENST00000636977 FILIP1LQ4L180 1135 aa16.82■□□□□ 0.28
CLN3-253ENST00000636977 NAALADL2Q58DX5 795 aa16.82■□□□□ 0.28
CLN3-253ENST00000636977 FAM182BQ5T319 152 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms