RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 KLRC3Q07444 240 aa24.28■■□□□ 1.48
VPS28-208ENST00000527797 CSPP1Q1MSJ5 1256 aa24.28■■□□□ 1.48
VPS28-208ENST00000527797 RRP36Q96EU6 259 aaKnown RBP24.28■■□□□ 1.48
VPS28-208ENST00000527797 UBA5Q9GZZ9 404 aa24.28■■□□□ 1.48
VPS28-208ENST00000527797 VPS54Q9P1Q0 977 aa24.28■■□□□ 1.48
VPS28-208ENST00000527797 KCNJ14Q9UNX9 436 aa24.28■■□□□ 1.48
VPS28-208ENST00000527797 A0A1W2PRG0 241 aa24.27■■□□□ 1.48
VPS28-208ENST00000527797 IQCA1LA6NCM1 817 aa24.27■■□□□ 1.48
VPS28-208ENST00000527797 SULF1Q8IWU6 871 aa24.27■■□□□ 1.48
VPS28-208ENST00000527797 CPVLQ9H3G5 476 aa24.27■■□□□ 1.48
VPS28-208ENST00000527797 RIOX1Q9H6W3 641 aa24.27■■□□□ 1.48
VPS28-208ENST00000527797 LMBRD1Q9NUN5 540 aa24.27■■□□□ 1.48
VPS28-208ENST00000527797 TMX2Q9Y320 296 aa24.27■■□□□ 1.48
VPS28-208ENST00000527797 ZC3H15Q8WU90 426 aaKnown RBP24.26■■□□□ 1.47
VPS28-208ENST00000527797 GMCL1Q96IK5 515 aa24.26■■□□□ 1.47
VPS28-208ENST00000527797 ZNF396Q96N95 335 aaPredicted RBP24.26■■□□□ 1.47
VPS28-208ENST00000527797 PHF20Q9BVI0 1012 aa24.26■■□□□ 1.47
VPS28-208ENST00000527797 SH2D4AQ9H788 454 aa24.26■■□□□ 1.47
VPS28-208ENST00000527797 KIF28PB7ZC32 967 aa24.25■■□□□ 1.47
VPS28-208ENST00000527797 ECE1P42892 770 aa24.25■■□□□ 1.47
VPS28-208ENST00000527797 ATL3Q6DD88 541 aa24.25■■□□□ 1.47
VPS28-208ENST00000527797 KCTD1Q719H9 257 aa24.25■■□□□ 1.47
VPS28-208ENST00000527797 ACER1Q8TDN7 264 aa24.25■■□□□ 1.47
VPS28-208ENST00000527797 ANP32EQ9BTT0 268 aa24.25■■□□□ 1.47
VPS28-208ENST00000527797 GDPD2Q9HCC8 539 aa24.25■■□□□ 1.47
VPS28-208ENST00000527797 VAT1LQ9HCJ6 419 aa24.25■■□□□ 1.47
VPS28-208ENST00000527797 GOPCQ9HD26 462 aa24.25■■□□□ 1.47
VPS28-208ENST00000527797 SH3GLB2Q9NR46 395 aa24.25■■□□□ 1.47
VPS28-208ENST00000527797 SEC63Q9UGP8 760 aaKnown RBP24.25■■□□□ 1.47
VPS28-208ENST00000527797 ZNF112Q9UJU3 913 aa24.25■■□□□ 1.47
VPS28-208ENST00000527797 CFAP45Q9UL16 551 aa24.25■■□□□ 1.47
VPS28-208ENST00000527797 ISY1Q9ULR0 285 aaKnown RBP24.25■■□□□ 1.47
VPS28-208ENST00000527797 FIBPO43427 364 aa24.24■■□□□ 1.47
VPS28-208ENST00000527797 NDUFB10O96000 172 aa24.24■■□□□ 1.47
VPS28-208ENST00000527797 U2AF2P26368 475 aaKnown RBP eCLIP24.24■■□□□ 1.47
VPS28-208ENST00000527797 USP48Q86UV5 1035 aa24.24■■□□□ 1.47
VPS28-208ENST00000527797 DIS3L2Q8IYB7 885 aaKnown RBP24.24■■□□□ 1.47
VPS28-208ENST00000527797 TMEM87AQ8NBN3 555 aa24.24■■□□□ 1.47
VPS28-208ENST00000527797 SCAND2PQ9GZW5 306 aaPredicted RBP24.24■■□□□ 1.47
VPS28-208ENST00000527797 TFIP11Q9UBB9 837 aaKnown RBP24.24■■□□□ 1.47
VPS28-208ENST00000527797 SKOR2Q2VWA4 1001 aaPredicted RBP24.24■■□□□ 1.47
VPS28-208ENST00000527797 TTBK2Q6IQ55 1244 aa24.24■■□□□ 1.47
VPS28-208ENST00000527797 FOXP1Q9H334 677 aaPredicted RBP24.24■■□□□ 1.47
VPS28-208ENST00000527797 FRMD4AQ9P2Q2 1039 aaPredicted RBP24.24■■□□□ 1.47
VPS28-208ENST00000527797 BTBD18B2RXH4 712 aa24.23■■□□□ 1.47
VPS28-208ENST00000527797 TRAK2O60296 914 aa24.23■■□□□ 1.47
VPS28-208ENST00000527797 HOMER1Q86YM7 354 aa24.23■■□□□ 1.47
VPS28-208ENST00000527797 SHISA4Q96DD7 197 aa24.23■■□□□ 1.47
VPS28-208ENST00000527797 PIGSQ96S52 555 aa24.23■■□□□ 1.47
VPS28-208ENST00000527797 TAF1DQ9H5J8 278 aaPredicted RBP24.23■■□□□ 1.47
VPS28-208ENST00000527797 BRMS1Q9HCU9 246 aa24.23■■□□□ 1.47
VPS28-208ENST00000527797 MYH4Q9Y623 1939 aa24.23■■□□□ 1.47
VPS28-208ENST00000527797 BMP3P12645 472 aa24.22■■□□□ 1.47
VPS28-208ENST00000527797 VEGFAP15692 232 aaPredicted RBP24.22■■□□□ 1.47
VPS28-208ENST00000527797 INPP5BP32019 993 aa24.22■■□□□ 1.47
VPS28-208ENST00000527797 NLRP5P59047 1200 aa24.22■■□□□ 1.47
VPS28-208ENST00000527797 KRT26Q7Z3Y9 468 aa24.22■■□□□ 1.47
VPS28-208ENST00000527797 SCYL3Q8IZE3 742 aa24.22■■□□□ 1.47
VPS28-208ENST00000527797 ADGRF4Q8IZF3 695 aa24.22■■□□□ 1.47
VPS28-208ENST00000527797 FAM177A1Q8N128 213 aaPredicted RBP24.22■■□□□ 1.47
VPS28-208ENST00000527797 GPKOWQ92917 476 aaPredicted RBP eCLIP24.22■■□□□ 1.47
VPS28-208ENST00000527797 WRNIP1Q96S55 665 aa24.22■■□□□ 1.47
VPS28-208ENST00000527797 KRT2P35908 639 aa24.21■■□□□ 1.47
VPS28-208ENST00000527797 SLC16A2P36021 539 aa24.21■■□□□ 1.47
VPS28-208ENST00000527797 MYSM1Q5VVJ2 828 aa24.21■■□□□ 1.47
VPS28-208ENST00000527797 WWC2Q6AWC2 1192 aa24.21■■□□□ 1.47
VPS28-208ENST00000527797 HEATR3Q7Z4Q2 680 aa24.21■■□□□ 1.47
VPS28-208ENST00000527797 NOSTRINQ8IVI9 506 aa24.21■■□□□ 1.47
VPS28-208ENST00000527797 BARHL2Q9NY43 387 aa24.21■■□□□ 1.47
VPS28-208ENST00000527797 ADM5C9JUS6 153 aa24.21■■□□□ 1.47
VPS28-208ENST00000527797 CALML3P27482 149 aa24.21■■□□□ 1.47
VPS28-208ENST00000527797 PNMA8AQ86V59 439 aaPredicted RBP24.21■■□□□ 1.47
VPS28-208ENST00000527797 CCDC148Q8NFR7 591 aa24.21■■□□□ 1.47
VPS28-208ENST00000527797 KLRG1Q96E93 195 aa24.21■■□□□ 1.47
VPS28-208ENST00000527797 SPATA32Q96LK8 384 aa24.21■■□□□ 1.47
VPS28-208ENST00000527797 VCPKMTQ9H867 229 aa24.21■■□□□ 1.47
VPS28-208ENST00000527797 JMJD4Q9H9V9 463 aa24.21■■□□□ 1.47
VPS28-208ENST00000527797 POTECB2RU33 542 aa24.2■■□□□ 1.46
VPS28-208ENST00000527797 hCG_1984214I3L0E3 225 aa24.2■■□□□ 1.46
VPS28-208ENST00000527797 EAPPQ56P03 285 aaPredicted RBP24.2■■□□□ 1.46
VPS28-208ENST00000527797 CCDC84Q86UT8 332 aaPredicted RBP24.2■■□□□ 1.46
VPS28-208ENST00000527797 ZNF713Q8N859 430 aaPredicted RBP24.2■■□□□ 1.46
VPS28-208ENST00000527797 CCDC12Q8WUD4 166 aaPredicted RBP24.2■■□□□ 1.46
VPS28-208ENST00000527797 NUP88Q99567 741 aaPredicted RBP24.2■■□□□ 1.46
VPS28-208ENST00000527797 FEZ1Q99689 392 aa24.2■■□□□ 1.46
VPS28-208ENST00000527797 STXBP3O00186 592 aa24.19■■□□□ 1.46
VPS28-208ENST00000527797 SPICE1Q8N0Z3 855 aa24.19■■□□□ 1.46
VPS28-208ENST00000527797 OXER1Q8TDS5 423 aa24.19■■□□□ 1.46
VPS28-208ENST00000527797 GLIS2Q9BZE0 524 aaPredicted RBP24.19■■□□□ 1.46
VPS28-208ENST00000527797 PICK1Q9NRD5 415 aa24.19■■□□□ 1.46
VPS28-208ENST00000527797 ELP1O95163 1332 aa24.18■■□□□ 1.46
VPS28-208ENST00000527797 PNMA6FA0A0J9YX94 578 aa24.18■■□□□ 1.46
VPS28-208ENST00000527797 USP17L10C9JJH3 530 aa24.18■■□□□ 1.46
VPS28-208ENST00000527797 TMEM232C9JQI7 657 aa24.18■■□□□ 1.46
VPS28-208ENST00000527797 LEO1Q8WVC0 666 aaPredicted RBP24.18■■□□□ 1.46
VPS28-208ENST00000527797 ZKSCAN4Q969J2 545 aaPredicted RBP24.18■■□□□ 1.46
VPS28-208ENST00000527797 MTMR8Q96EF0 704 aa24.18■■□□□ 1.46
VPS28-208ENST00000527797 USP28Q96RU2 1077 aa24.18■■□□□ 1.46
VPS28-208ENST00000527797 DDX49Q9Y6V7 483 aaKnown RBP24.18■■□□□ 1.46
VPS28-208ENST00000527797 SSC5DA1L4H1 1573 aa24.18■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms