RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 OSBPP22059 807 aa17.5■□□□□ 0.39
NUP54-213ENST00000513352 LIFRP42702 1097 aa17.5■□□□□ 0.39
NUP54-213ENST00000513352 APOBRQ0VD83 1088 aa17.5■□□□□ 0.39
NUP54-213ENST00000513352 USP17L24Q0WX57 530 aa17.5■□□□□ 0.39
NUP54-213ENST00000513352 GPAT2Q6NUI2 795 aa17.5■□□□□ 0.39
NUP54-213ENST00000513352 NOL8Q76FK4 1167 aaKnown RBP17.5■□□□□ 0.39
NUP54-213ENST00000513352 RAB11FIP4Q86YS3 637 aa17.5■□□□□ 0.39
NUP54-213ENST00000513352 ZNF654Q8IZM8 581 aa17.5■□□□□ 0.39
NUP54-213ENST00000513352 DCAF4Q8WV16 495 aa17.5■□□□□ 0.39
NUP54-213ENST00000513352 PTPN18Q99952 460 aa17.5■□□□□ 0.39
NUP54-213ENST00000513352 MYL10Q9BUA6 226 aa17.5■□□□□ 0.39
NUP54-213ENST00000513352 SLC12A7Q9Y666 1083 aa17.5■□□□□ 0.39
NUP54-213ENST00000513352 KLF18A0A0U1RQI7 1052 aa17.49■□□□□ 0.39
NUP54-213ENST00000513352 PDHBP11177 359 aa17.49■□□□□ 0.39
NUP54-213ENST00000513352 BMP3P12645 472 aa17.49■□□□□ 0.39
NUP54-213ENST00000513352 TM4SF4P48230 202 aa17.49■□□□□ 0.39
NUP54-213ENST00000513352 TAF1CQ15572 869 aaPredicted RBP17.49■□□□□ 0.39
NUP54-213ENST00000513352 KCTD1Q719H9 257 aa17.49■□□□□ 0.39
NUP54-213ENST00000513352 MICU3Q86XE3 530 aa17.49■□□□□ 0.39
NUP54-213ENST00000513352 IL17RAQ96F46 866 aa17.49■□□□□ 0.39
NUP54-213ENST00000513352 GMCL1Q96IK5 515 aa17.49■□□□□ 0.39
NUP54-213ENST00000513352 LARP6Q9BRS8 491 aaKnown RBP17.49■□□□□ 0.39
NUP54-213ENST00000513352 GPCPD1Q9NPB8 672 aa17.49■□□□□ 0.39
NUP54-213ENST00000513352 PNMA3Q9UL41 463 aa17.49■□□□□ 0.39
NUP54-213ENST00000513352 FLOT1O75955 427 aa17.48■□□□□ 0.39
NUP54-213ENST00000513352 DDAH1O94760 285 aa17.48■□□□□ 0.39
NUP54-213ENST00000513352 GOLGA8HP0CJ92 632 aa17.48■□□□□ 0.39
NUP54-213ENST00000513352 RXRAP19793 462 aa17.48■□□□□ 0.39
NUP54-213ENST00000513352 RABEP1Q15276 862 aa17.48■□□□□ 0.39
NUP54-213ENST00000513352 CCDC144CPQ8IYA2 1237 aa17.48■□□□□ 0.39
NUP54-213ENST00000513352 DNAJC5GQ8N7S2 189 aa17.48■□□□□ 0.39
NUP54-213ENST00000513352 KIF2CQ99661 725 aa17.48■□□□□ 0.39
NUP54-213ENST00000513352 BEGAINQ9BUH8 593 aa17.48■□□□□ 0.39
NUP54-213ENST00000513352 ASCC2Q9H1I8 757 aaPredicted RBP17.48■□□□□ 0.39
NUP54-213ENST00000513352 GOLGA8BA8MQT2 603 aa17.47■□□□□ 0.39
NUP54-213ENST00000513352 TMEM232C9JQI7 657 aa17.47■□□□□ 0.39
NUP54-213ENST00000513352 PARP1P09874 1014 aaKnown RBP17.47■□□□□ 0.39
NUP54-213ENST00000513352 ZNF543Q08ER8 600 aa17.47■□□□□ 0.39
NUP54-213ENST00000513352 TOB2Q14106 344 aaPredicted RBP17.47■□□□□ 0.39
NUP54-213ENST00000513352 ANKRD1Q15327 319 aa17.47■□□□□ 0.39
NUP54-213ENST00000513352 APOA5Q6Q788 366 aa17.47■□□□□ 0.39
NUP54-213ENST00000513352 CATSPERGQ6ZRH7 1159 aa17.47■□□□□ 0.39
NUP54-213ENST00000513352 SGMS1Q86VZ5 419 aa17.47■□□□□ 0.39
NUP54-213ENST00000513352 CTCFLQ8NI51 663 aaPredicted RBP17.47■□□□□ 0.39
NUP54-213ENST00000513352 SMCR8Q8TEV9 937 aaPredicted RBP17.47■□□□□ 0.39
NUP54-213ENST00000513352 PARK7Q99497 189 aaKnown RBP17.47■□□□□ 0.39
NUP54-213ENST00000513352 BRPF3Q9ULD4 1205 aa17.47■□□□□ 0.39
NUP54-213ENST00000513352 GOLGA8AA7E2F4 631 aa17.46■□□□□ 0.39
NUP54-213ENST00000513352 ZBTB43O43298 467 aa17.46■□□□□ 0.39
NUP54-213ENST00000513352 ALDH1A1P00352 501 aa17.46■□□□□ 0.39
NUP54-213ENST00000513352 CALM1P0DP23 149 aa17.46■□□□□ 0.39
NUP54-213ENST00000513352 CALM2P0DP24 149 aa17.46■□□□□ 0.39
NUP54-213ENST00000513352 CALM3P0DP25 149 aa17.46■□□□□ 0.39
NUP54-213ENST00000513352 CYP2C8P10632 490 aa17.46■□□□□ 0.39
NUP54-213ENST00000513352 HOXA7P31268 230 aaPredicted RBP17.46■□□□□ 0.39
NUP54-213ENST00000513352 AK2P54819 239 aa17.46■□□□□ 0.39
NUP54-213ENST00000513352 MAP2K1Q02750 393 aaPredicted RBP17.46■□□□□ 0.39
NUP54-213ENST00000513352 ASPRV1Q53RT3 343 aa17.46■□□□□ 0.39
NUP54-213ENST00000513352 KIFC2Q96AC6 838 aa17.46■□□□□ 0.39
NUP54-213ENST00000513352 ZCCHC17Q9NP64 241 aaKnown RBP17.46■□□□□ 0.39
NUP54-213ENST00000513352 FBXO28Q9NVF7 368 aa17.46■□□□□ 0.39
NUP54-213ENST00000513352 FEM1BQ9UK73 627 aa17.46■□□□□ 0.39
NUP54-213ENST00000513352 SLC45A1Q9Y2W3 748 aa17.46■□□□□ 0.39
NUP54-213ENST00000513352 CTDP1Q9Y5B0 961 aaPredicted RBP17.46■□□□□ 0.39
NUP54-213ENST00000513352 DHX16O60231 1041 aaKnown RBP17.45■□□□□ 0.38
NUP54-213ENST00000513352 ST18O60284 1047 aa17.45■□□□□ 0.38
NUP54-213ENST00000513352 TRPA1O75762 1119 aa17.45■□□□□ 0.38
NUP54-213ENST00000513352 KIF5BP33176 963 aa17.45■□□□□ 0.38
NUP54-213ENST00000513352 SLC16A2P36021 539 aa17.45■□□□□ 0.38
NUP54-213ENST00000513352 STAT2P52630 851 aa17.45■□□□□ 0.38
NUP54-213ENST00000513352 GRM4Q14833 912 aa17.45■□□□□ 0.38
NUP54-213ENST00000513352 GPATCH4Q5T3I0 446 aaKnown RBP17.45■□□□□ 0.38
NUP54-213ENST00000513352 TTBK2Q6IQ55 1244 aa17.45■□□□□ 0.38
NUP54-213ENST00000513352 FAM160B2Q86V87 743 aa17.45■□□□□ 0.38
NUP54-213ENST00000513352 CHURC1Q8WUH1 139 aa17.45■□□□□ 0.38
NUP54-213ENST00000513352 SLF1Q9BQI6 1058 aa17.45■□□□□ 0.38
NUP54-213ENST00000513352 AGXT2Q9BYV1 514 aa17.45■□□□□ 0.38
NUP54-213ENST00000513352 ZFYVE28Q9HCC9 887 aa17.45■□□□□ 0.38
NUP54-213ENST00000513352 PARP14Q460N5 1801 aa17.44■□□□□ 0.38
NUP54-213ENST00000513352 SNHG28P0DPA3 235 aa17.44■□□□□ 0.38
NUP54-213ENST00000513352 METAP2P50579 478 aaKnown RBP eCLIP17.44■□□□□ 0.38
NUP54-213ENST00000513352 HERVK_113P62684 666 aa17.44■□□□□ 0.38
NUP54-213ENST00000513352 TROAPQ12815 778 aa17.44■□□□□ 0.38
NUP54-213ENST00000513352 STK3Q13188 491 aa17.44■□□□□ 0.38
NUP54-213ENST00000513352 COG2Q14746 738 aa17.44■□□□□ 0.38
NUP54-213ENST00000513352 RTN1Q16799 776 aa17.44■□□□□ 0.38
NUP54-213ENST00000513352 P2RX7Q99572 595 aaKnown RBP17.44■□□□□ 0.38
NUP54-213ENST00000513352 PAGR1Q9BTK6 254 aa17.44■□□□□ 0.38
NUP54-213ENST00000513352 RNF186Q9NXI6 227 aa17.44■□□□□ 0.38
NUP54-213ENST00000513352 KLRF2D3W0D1 207 aa17.43■□□□□ 0.38
NUP54-213ENST00000513352 CRHR2Q13324 411 aa17.43■□□□□ 0.38
NUP54-213ENST00000513352 SYDE2Q5VT97 1194 aa17.43■□□□□ 0.38
NUP54-213ENST00000513352 STAG2Q8N3U4 1231 aa17.43■□□□□ 0.38
NUP54-213ENST00000513352 FBXL16Q8N461 479 aa17.43■□□□□ 0.38
NUP54-213ENST00000513352 ATG4CQ96DT6 458 aa17.43■□□□□ 0.38
NUP54-213ENST00000513352 UBA5Q9GZZ9 404 aa17.43■□□□□ 0.38
NUP54-213ENST00000513352 CPVLQ9H3G5 476 aa17.43■□□□□ 0.38
NUP54-213ENST00000513352 HOXC10Q9NYD6 342 aa17.43■□□□□ 0.38
NUP54-213ENST00000513352 MAD2L2Q9UI95 211 aa17.43■□□□□ 0.38
NUP54-213ENST00000513352 PPP1R9AQ9ULJ8 1098 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms