RNA–Protein interactions for RNA: ENST00000360001.10

SDF4-202, Transcript of stromal cell derived factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SDF4, Length 1,956 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-202ENST00000360001 DDX49Q9Y6V7 483 aaKnown RBP26.76■■□□□ 1.87
SDF4-202ENST00000360001 A0A1W2PRG0 241 aa26.75■■□□□ 1.87
SDF4-202ENST00000360001 MYSM1Q5VVJ2 828 aa26.75■■□□□ 1.87
SDF4-202ENST00000360001 GMCL1P1Q8NEA9 526 aa26.75■■□□□ 1.87
SDF4-202ENST00000360001 GPT2Q8TD30 523 aa26.75■■□□□ 1.87
SDF4-202ENST00000360001 RIOX1Q9H6W3 641 aa26.75■■□□□ 1.87
SDF4-202ENST00000360001 GPCPD1Q9NPB8 672 aa26.75■■□□□ 1.87
SDF4-202ENST00000360001 CFAP45Q9UL16 551 aa26.75■■□□□ 1.87
SDF4-202ENST00000360001 BTBD18B2RXH4 712 aa26.75■■□□□ 1.87
SDF4-202ENST00000360001 KLHL40Q2TBA0 621 aa26.75■■□□□ 1.87
SDF4-202ENST00000360001 GPATCH4Q5T3I0 446 aaKnown RBP26.75■■□□□ 1.87
SDF4-202ENST00000360001 SLFN13Q68D06 897 aa26.75■■□□□ 1.87
SDF4-202ENST00000360001 DCAF4Q8WV16 495 aa26.75■■□□□ 1.87
SDF4-202ENST00000360001 L3MBTL3Q96JM7 780 aaPredicted RBP26.75■■□□□ 1.87
SDF4-202ENST00000360001 ZNF396Q96N95 335 aaPredicted RBP26.75■■□□□ 1.87
SDF4-202ENST00000360001 USP28Q96RU2 1077 aa26.75■■□□□ 1.87
SDF4-202ENST00000360001 SYNPO2Q9UMS6 1093 aa26.75■■□□□ 1.87
SDF4-202ENST00000360001 ELP1O95163 1332 aa26.74■■□□□ 1.87
SDF4-202ENST00000360001 ATAD5Q96QE3 1844 aa26.74■■□□□ 1.87
SDF4-202ENST00000360001 DPY19L2Q6NUT2 758 aa26.74■■□□□ 1.87
SDF4-202ENST00000360001 LEO1Q8WVC0 666 aaPredicted RBP26.74■■□□□ 1.87
SDF4-202ENST00000360001 FTOQ9C0B1 505 aaKnown RBP eCLIP26.74■■□□□ 1.873e-7■■□□□ 11.7
SDF4-202ENST00000360001 FOXP1Q9H334 677 aaPredicted RBP26.74■■□□□ 1.87
SDF4-202ENST00000360001 ZC3H4Q9UPT8 1303 aaKnown RBP26.74■■□□□ 1.87
SDF4-202ENST00000360001 F5H6K3 240 aa26.73■■□□□ 1.87
SDF4-202ENST00000360001 KLRC3Q07444 240 aa26.73■■□□□ 1.87
SDF4-202ENST00000360001 GNL2Q13823 731 aaKnown RBP26.73■■□□□ 1.87
SDF4-202ENST00000360001 NPY5RQ15761 445 aa26.73■■□□□ 1.87
SDF4-202ENST00000360001 CCDC96Q2M329 555 aa26.73■■□□□ 1.87
SDF4-202ENST00000360001 SPATA32Q96LK8 384 aa26.73■■□□□ 1.87
SDF4-202ENST00000360001 POLR2AP24928 1970 aaKnown RBP26.73■■□□□ 1.87
SDF4-202ENST00000360001 PITPNM2Q9BZ72 1349 aa26.73■■□□□ 1.87
SDF4-202ENST00000360001 KCTD1Q719H9 257 aa26.73■■□□□ 1.87
SDF4-202ENST00000360001 NOSTRINQ8IVI9 506 aa26.73■■□□□ 1.87
SDF4-202ENST00000360001 OXER1Q8TDS5 423 aa26.73■■□□□ 1.87
SDF4-202ENST00000360001 GPKOWQ92917 476 aaPredicted RBP eCLIP26.73■■□□□ 1.87
SDF4-202ENST00000360001 ARHGEF10LQ9HCE6 1279 aa26.73■■□□□ 1.87
SDF4-202ENST00000360001 FRMD4AQ9P2Q2 1039 aaPredicted RBP26.73■■□□□ 1.87
SDF4-202ENST00000360001 PPP2R3BQ9Y5P8 575 aa26.73■■□□□ 1.87
SDF4-202ENST00000360001 NDUFB10O96000 172 aa26.72■■□□□ 1.87
SDF4-202ENST00000360001 ASNSP08243 561 aa26.72■■□□□ 1.87
SDF4-202ENST00000360001 PRAMEF18Q5VWM3 479 aa26.72■■□□□ 1.87
SDF4-202ENST00000360001 TTBK2Q6IQ55 1244 aa26.72■■□□□ 1.87
SDF4-202ENST00000360001 ACER1Q8TDN7 264 aa26.72■■□□□ 1.87
SDF4-202ENST00000360001 RRP36Q96EU6 259 aaKnown RBP26.72■■□□□ 1.87
SDF4-202ENST00000360001 SH3GLB2Q9NR46 395 aa26.72■■□□□ 1.87
SDF4-202ENST00000360001 ECE1P42892 770 aa26.71■■□□□ 1.87
SDF4-202ENST00000360001 SLC1A4P43007 532 aa26.71■■□□□ 1.87
SDF4-202ENST00000360001 NR5A1Q13285 461 aa26.71■■□□□ 1.87
SDF4-202ENST00000360001 WWC2Q6AWC2 1192 aa26.71■■□□□ 1.87
SDF4-202ENST00000360001 GMCL1Q96IK5 515 aa26.71■■□□□ 1.87
SDF4-202ENST00000360001 VAT1LQ9HCJ6 419 aa26.71■■□□□ 1.87
SDF4-202ENST00000360001 TMX2Q9Y320 296 aa26.71■■□□□ 1.87
SDF4-202ENST00000360001 RAD21O60216 631 aa26.71■■□□□ 1.87
SDF4-202ENST00000360001 CEBPZQ03701 1054 aaKnown RBP26.71■■□□□ 1.87
SDF4-202ENST00000360001 PIGSQ96S52 555 aa26.71■■□□□ 1.87
SDF4-202ENST00000360001 UBE2HP62256 183 aa26.7■■□□□ 1.86
SDF4-202ENST00000360001 DCAF15Q66K64 600 aa26.7■■□□□ 1.86
SDF4-202ENST00000360001 TYW1BQ6NUM6 668 aa26.7■■□□□ 1.86
SDF4-202ENST00000360001 HOMER1Q86YM7 354 aa26.7■■□□□ 1.86
SDF4-202ENST00000360001 HOOK2Q96ED9 719 aa26.7■■□□□ 1.86
SDF4-202ENST00000360001 BARHL2Q9NY43 387 aa26.7■■□□□ 1.86
SDF4-202ENST00000360001 RTEL1Q9NZ71 1219 aa26.7■■□□□ 1.86
SDF4-202ENST00000360001 RCOR1Q9UKL0 485 aa26.7■■□□□ 1.86
SDF4-202ENST00000360001 STXBP3O00186 592 aa26.69■■□□□ 1.86
SDF4-202ENST00000360001 MBD3O95983 291 aa26.69■■□□□ 1.86
SDF4-202ENST00000360001 KRT2P35908 639 aa26.69■■□□□ 1.86
SDF4-202ENST00000360001 GLTPD2A6NH11 291 aa26.69■■□□□ 1.86
SDF4-202ENST00000360001 CTNND1O60716 968 aaKnown RBP26.69■■□□□ 1.86
SDF4-202ENST00000360001 NLRP5P59047 1200 aa26.69■■□□□ 1.86
SDF4-202ENST00000360001 HEATR3Q7Z4Q2 680 aa26.69■■□□□ 1.86
SDF4-202ENST00000360001 ADGRF4Q8IZF3 695 aa26.69■■□□□ 1.86
SDF4-202ENST00000360001 JMJD4Q9H9V9 463 aa26.69■■□□□ 1.86
SDF4-202ENST00000360001 SEC63Q9UGP8 760 aaKnown RBP26.69■■□□□ 1.86
SDF4-202ENST00000360001 SLC16A2P36021 539 aa26.68■■□□□ 1.86
SDF4-202ENST00000360001 ZNF341Q9BYN7 854 aa26.68■■□□□ 1.86
SDF4-202ENST00000360001 GINM1Q9NU53 330 aa26.68■■□□□ 1.86
SDF4-202ENST00000360001 POLR3EQ9NVU0 708 aa26.68■■□□□ 1.86
SDF4-202ENST00000360001 SSC5DA1L4H1 1573 aa26.68■■□□□ 1.86
SDF4-202ENST00000360001 TNFRSF25Q93038 417 aa26.67■■□□□ 1.86
SDF4-202ENST00000360001 NUP88Q99567 741 aaPredicted RBP26.67■■□□□ 1.86
SDF4-202ENST00000360001 ZNF112Q9UJU3 913 aa26.67■■□□□ 1.86
SDF4-202ENST00000360001 CLIC4Q9Y696 253 aa26.67■■□□□ 1.86
SDF4-202ENST00000360001 NASPP49321 788 aaPredicted RBP26.67■■□□□ 1.86
SDF4-202ENST00000360001 KIAA1755Q5JYT7 1200 aa26.67■■□□□ 1.86
SDF4-202ENST00000360001 CCDC84Q86UT8 332 aaPredicted RBP26.67■■□□□ 1.86
SDF4-202ENST00000360001 FAM177A1Q8N128 213 aaPredicted RBP26.67■■□□□ 1.86
SDF4-202ENST00000360001 MTMR8Q96EF0 704 aa26.67■■□□□ 1.86
SDF4-202ENST00000360001 BRMS1Q9HCU9 246 aa26.67■■□□□ 1.86
SDF4-202ENST00000360001 CALML3P27482 149 aa26.66■■□□□ 1.86
SDF4-202ENST00000360001 INPP5BP32019 993 aa26.66■■□□□ 1.86
SDF4-202ENST00000360001 GLIS2Q9BZE0 524 aaPredicted RBP26.66■■□□□ 1.86
SDF4-202ENST00000360001 ISY1Q9ULR0 285 aaKnown RBP26.66■■□□□ 1.86
SDF4-202ENST00000360001 BMP3P12645 472 aa26.66■■□□□ 1.86
SDF4-202ENST00000360001 CCDC148Q8NFR7 591 aa26.66■■□□□ 1.86
SDF4-202ENST00000360001 GOPCQ9HD26 462 aa26.66■■□□□ 1.86
SDF4-202ENST00000360001 DOCK1Q14185 1865 aa26.65■■□□□ 1.86
SDF4-202ENST00000360001 ADAMTS3O15072 1205 aa26.65■■□□□ 1.86
SDF4-202ENST00000360001 ANO1Q5XXA6 986 aa26.65■■□□□ 1.86
SDF4-202ENST00000360001 USP50Q70EL3 339 aaPredicted RBP26.65■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms