RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 SPDYE4A6NLX3 237 aa11.76□□□□□ -0.53
LIMA1-201ENST00000341247 GSTO1P78417 241 aa11.76□□□□□ -0.53
LIMA1-201ENST00000341247 WWC2Q6AWC2 1192 aa11.76□□□□□ -0.53
LIMA1-201ENST00000341247 NYAP1Q6ZVC0 841 aa11.76□□□□□ -0.53
LIMA1-201ENST00000341247 EYA3Q99504 573 aa11.76□□□□□ -0.53
LIMA1-201ENST00000341247 RTFDC1Q9BY42 306 aaPredicted RBP11.76□□□□□ -0.53
LIMA1-201ENST00000341247 UBA5Q9GZZ9 404 aa11.76□□□□□ -0.53
LIMA1-201ENST00000341247 MAD2L2Q9UI95 211 aa11.76□□□□□ -0.53
LIMA1-201ENST00000341247 CDK5RAP2Q96SN8 1893 aa11.76□□□□□ -0.53
LIMA1-201ENST00000341247 TEX33O43247 280 aa11.75□□□□□ -0.53
LIMA1-201ENST00000341247 RASA1P20936 1047 aa11.75□□□□□ -0.53
LIMA1-201ENST00000341247 CUL4BQ13620 913 aa11.75□□□□□ -0.53
LIMA1-201ENST00000341247 PPP4R3BQ5MIZ7 849 aa11.75□□□□□ -0.53
LIMA1-201ENST00000341247 ZNF215Q9UL58 517 aaPredicted RBP11.75□□□□□ -0.53
LIMA1-201ENST00000341247 CTNND2Q9UQB3 1225 aa11.75□□□□□ -0.53
LIMA1-201ENST00000341247 RAD21O60216 631 aa11.75□□□□□ -0.53
LIMA1-201ENST00000341247 LDHCP07864 332 aa11.75□□□□□ -0.53
LIMA1-201ENST00000341247 CDK8P49336 464 aa11.75□□□□□ -0.53
LIMA1-201ENST00000341247 ATP2C1P98194 919 aaPredicted RBP11.75□□□□□ -0.53
LIMA1-201ENST00000341247 KANK3Q6NY19 840 aa11.75□□□□□ -0.53
LIMA1-201ENST00000341247 FERMT2Q96AC1 680 aa11.75□□□□□ -0.53
LIMA1-201ENST00000341247 QTRT2Q9H974 415 aaKnown RBP11.75□□□□□ -0.53
LIMA1-201ENST00000341247 PAXBP1Q9Y5B6 917 aa11.75□□□□□ -0.53
LIMA1-201ENST00000341247 LAMB1P07942 1786 aa11.75□□□□□ -0.53
LIMA1-201ENST00000341247 DLEC1Q9Y238 1755 aa11.75□□□□□ -0.53
LIMA1-201ENST00000341247 NCBP1Q09161 790 aaKnown RBP11.75□□□□□ -0.53
LIMA1-201ENST00000341247 PDCL2Q8N4E4 241 aa11.75□□□□□ -0.53
LIMA1-201ENST00000341247 EEF2KMTQ96G04 330 aa11.75□□□□□ -0.53
LIMA1-201ENST00000341247 ZNF219Q9P2Y4 722 aaPredicted RBP11.75□□□□□ -0.53
LIMA1-201ENST00000341247 DACH1Q9UI36 760 aa11.75□□□□□ -0.53
LIMA1-201ENST00000341247 FRMPD2Q68DX3 1309 aaPredicted RBP11.75□□□□□ -0.53
LIMA1-201ENST00000341247 KLRF2D3W0D1 207 aa11.74□□□□□ -0.53
LIMA1-201ENST00000341247 CCT6AP40227 531 aaKnown RBP11.74□□□□□ -0.53
LIMA1-201ENST00000341247 SCNN1DP51172 638 aa11.74□□□□□ -0.53
LIMA1-201ENST00000341247 DPYDQ12882 1025 aa11.74□□□□□ -0.53
LIMA1-201ENST00000341247 DHX8Q14562 1220 aaKnown RBP11.74□□□□□ -0.53
LIMA1-201ENST00000341247 DOK7Q18PE1 504 aa11.74□□□□□ -0.53
LIMA1-201ENST00000341247 RRAGBQ5VZM2 374 aa11.74□□□□□ -0.53
LIMA1-201ENST00000341247 DGKHQ86XP1 1220 aa11.74□□□□□ -0.53
LIMA1-201ENST00000341247 KIF18AQ8NI77 898 aa11.74□□□□□ -0.53
LIMA1-201ENST00000341247 CCDC34Q96HJ3 373 aa11.74□□□□□ -0.53
LIMA1-201ENST00000341247 RBM17Q96I25 401 aaKnown RBP11.74□□□□□ -0.53
LIMA1-201ENST00000341247 TMEM60Q9H2L4 133 aa11.74□□□□□ -0.53
LIMA1-201ENST00000341247 CCDC88AQ3V6T2 1871 aa11.74□□□□□ -0.53
LIMA1-201ENST00000341247 PDS5AQ29RF7 1337 aaKnown RBP11.74□□□□□ -0.53
LIMA1-201ENST00000341247 ATP2B2Q01814 1243 aa11.74□□□□□ -0.53
LIMA1-201ENST00000341247 TBC1D16Q8TBP0 767 aa11.74□□□□□ -0.53
LIMA1-201ENST00000341247 ENOX1Q8TC92 643 aaKnown RBP11.74□□□□□ -0.53
LIMA1-201ENST00000341247 DESI2Q9BSY9 194 aa11.74□□□□□ -0.53
LIMA1-201ENST00000341247 DNAI1Q9UI46 699 aa11.74□□□□□ -0.53
LIMA1-201ENST00000341247 ADAMTSL1Q8N6G6 1762 aa11.74□□□□□ -0.53
LIMA1-201ENST00000341247 CBX1P83916 185 aa11.74□□□□□ -0.53
LIMA1-201ENST00000341247 CERKQ8TCT0 537 aa11.74□□□□□ -0.53
LIMA1-201ENST00000341247 UIMC1Q96RL1 719 aa11.74□□□□□ -0.53
LIMA1-201ENST00000341247 PCDHA4Q9UN74 947 aa11.74□□□□□ -0.53
LIMA1-201ENST00000341247 ANKRD31Q8N7Z5 1873 aa11.74□□□□□ -0.53
LIMA1-201ENST00000341247 SYNRGQ9UMZ2 1314 aa11.74□□□□□ -0.53
LIMA1-201ENST00000341247 NAPAP54920 295 aa11.73□□□□□ -0.53
LIMA1-201ENST00000341247 GRM4Q14833 912 aa11.73□□□□□ -0.53
LIMA1-201ENST00000341247 CRY2Q49AN0 593 aa11.73□□□□□ -0.53
LIMA1-201ENST00000341247 NT5DC1Q5TFE4 455 aa11.73□□□□□ -0.53
LIMA1-201ENST00000341247 LRRC47Q8N1G4 583 aaKnown RBP11.73□□□□□ -0.53
LIMA1-201ENST00000341247 CEP95Q96GE4 821 aa11.73□□□□□ -0.53
LIMA1-201ENST00000341247 MTRQ99707 1265 aa11.73□□□□□ -0.53
LIMA1-201ENST00000341247 FLT1P17948 1338 aa11.73□□□□□ -0.53
LIMA1-201ENST00000341247 LETM2Q2VYF4 491 aa11.73□□□□□ -0.53
LIMA1-201ENST00000341247 IQUBQ8NA54 791 aa11.73□□□□□ -0.53
LIMA1-201ENST00000341247 LRRN4CLQ8ND94 238 aa11.73□□□□□ -0.53
LIMA1-201ENST00000341247 PRDM10Q9NQV6 1147 aa11.73□□□□□ -0.53
LIMA1-201ENST00000341247 GDAQ9Y2T3 454 aa11.73□□□□□ -0.53
LIMA1-201ENST00000341247 PES1O00541 588 aaKnown RBP11.73□□□□□ -0.53
LIMA1-201ENST00000341247 ZNF18P17022 549 aa11.73□□□□□ -0.53
LIMA1-201ENST00000341247 ATP2B4P23634 1241 aa11.73□□□□□ -0.53
LIMA1-201ENST00000341247 MAP7D2Q96T17 732 aa11.73□□□□□ -0.53
LIMA1-201ENST00000341247 PCDHA6Q9UN73 950 aa11.73□□□□□ -0.53
LIMA1-201ENST00000341247 PCDHA8Q9Y5H6 950 aa11.73□□□□□ -0.53
LIMA1-201ENST00000341247 POLRMTO00411 1230 aaKnown RBP11.72□□□□□ -0.53
LIMA1-201ENST00000341247 CTIFO43310 598 aaKnown RBP11.72□□□□□ -0.53
LIMA1-201ENST00000341247 BMP15O95972 392 aa11.72□□□□□ -0.53
LIMA1-201ENST00000341247 CALML3P27482 149 aa11.72□□□□□ -0.53
LIMA1-201ENST00000341247 STAT6P42226 847 aa11.72□□□□□ -0.53
LIMA1-201ENST00000341247 JAKMIP3Q5VZ66 844 aa11.72□□□□□ -0.53
LIMA1-201ENST00000341247 LTBP1Q14766 1721 aa11.72□□□□□ -0.53
LIMA1-201ENST00000341247 USP17L5A8MUK1 530 aa11.72□□□□□ -0.53
LIMA1-201ENST00000341247 MTF1Q14872 753 aa11.72□□□□□ -0.53
LIMA1-201ENST00000341247 MSL1Q68DK7 614 aa11.72□□□□□ -0.53
LIMA1-201ENST00000341247 SPECC1LQ69YQ0 1117 aa11.72□□□□□ -0.53
LIMA1-201ENST00000341247 BAG1Q99933 345 aaPredicted RBP11.72□□□□□ -0.53
LIMA1-201ENST00000341247 PARP1P09874 1014 aaKnown RBP11.72□□□□□ -0.53
LIMA1-201ENST00000341247 PPP4CP60510 307 aa11.72□□□□□ -0.53
LIMA1-201ENST00000341247 PIGSQ96S52 555 aa11.72□□□□□ -0.53
LIMA1-201ENST00000341247 BIN2Q9UBW5 565 aaPredicted RBP11.72□□□□□ -0.53
LIMA1-201ENST00000341247 MAST2Q6P0Q8 1798 aa11.72□□□□□ -0.53
LIMA1-201ENST00000341247 RGL2O15211 777 aa11.71□□□□□ -0.53
LIMA1-201ENST00000341247 TOGARAM2Q6ZUX3 1019 aa11.71□□□□□ -0.53
LIMA1-201ENST00000341247 SH3RF1Q7Z6J0 888 aa11.71□□□□□ -0.53
LIMA1-201ENST00000341247 TRIML1Q8N9V2 468 aa11.71□□□□□ -0.53
LIMA1-201ENST00000341247 SPATA20Q8TB22 786 aa11.71□□□□□ -0.53
LIMA1-201ENST00000341247 VPS16Q9H269 839 aa11.71□□□□□ -0.53
LIMA1-201ENST00000341247 GPCPD1Q9NPB8 672 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms