RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 ZMYND10O75800 440 aa17.17■□□□□ 0.34
SHH-201ENST00000297261 KRT2P35908 639 aa17.17■□□□□ 0.34
SHH-201ENST00000297261 ITPK1Q13572 414 aa17.17■□□□□ 0.34
SHH-201ENST00000297261 WWC2Q6AWC2 1192 aa17.17■□□□□ 0.34
SHH-201ENST00000297261 EXOC4Q96A65 974 aa17.17■□□□□ 0.34
SHH-201ENST00000297261 HGSO14964 777 aaPredicted RBP17.16■□□□□ 0.34
SHH-201ENST00000297261 RASGRF1Q13972 1273 aa17.16■□□□□ 0.34
SHH-201ENST00000297261 FAM71BQ8TC56 605 aa17.16■□□□□ 0.34
SHH-201ENST00000297261 VPS72Q15906 364 aa17.16■□□□□ 0.34
SHH-201ENST00000297261 IFI16Q16666 785 aaKnown RBP17.16■□□□□ 0.34
SHH-201ENST00000297261 ARHGAP25P42331 645 aa17.15■□□□□ 0.34
SHH-201ENST00000297261 SCARF1Q14162 830 aa17.15■□□□□ 0.34
SHH-201ENST00000297261 WHAMMP3Q1A5X7 153 aa17.15■□□□□ 0.34
SHH-201ENST00000297261 TMOD2Q9NZR1 351 aa17.15■□□□□ 0.34
SHH-201ENST00000297261 KIF4AO95239 1232 aa17.15■□□□□ 0.34
SHH-201ENST00000297261 AKNAD1Q5T1N1 836 aa17.15■□□□□ 0.34
SHH-201ENST00000297261 SLC35F6Q8N357 371 aa17.15■□□□□ 0.34
SHH-201ENST00000297261 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.15■□□□□ 0.34
SHH-201ENST00000297261 SECISBP2LQ93073 1101 aaKnown RBP17.15■□□□□ 0.34
SHH-201ENST00000297261 NOC4LQ9BVI4 516 aaKnown RBP17.15■□□□□ 0.34
SHH-201ENST00000297261 MED4Q9NPJ6 270 aa17.15■□□□□ 0.34
SHH-201ENST00000297261 TNNC1P63316 161 aa17.15■□□□□ 0.34
SHH-201ENST00000297261 CCDC6Q16204 474 aa17.15■□□□□ 0.34
SHH-201ENST00000297261 PLA2G12BQ9BX93 195 aa17.15■□□□□ 0.34
SHH-201ENST00000297261 NSRP1Q9H0G5 558 aaKnown RBP17.15■□□□□ 0.34
SHH-201ENST00000297261 PPANQ9NQ55 473 aaKnown RBP17.15■□□□□ 0.34
SHH-201ENST00000297261 NWD1Q149M9 1564 aa17.15■□□□□ 0.34
SHH-201ENST00000297261 PAK1Q13153 545 aa17.15■□□□□ 0.34
SHH-201ENST00000297261 KRT27Q7Z3Y8 459 aa17.15■□□□□ 0.34
SHH-201ENST00000297261 FBXO18Q8NFZ0 1043 aa17.15■□□□□ 0.34
SHH-201ENST00000297261 WDR66Q8TBY9 1149 aa17.15■□□□□ 0.34
SHH-201ENST00000297261 PHLPP2Q6ZVD8 1323 aa17.14■□□□□ 0.33
SHH-201ENST00000297261 ENC1O14682 589 aa17.14■□□□□ 0.33
SHH-201ENST00000297261 KRT13P13646 458 aa17.14■□□□□ 0.33
SHH-201ENST00000297261 TRIM14Q14142 442 aa17.14■□□□□ 0.33
SHH-201ENST00000297261 TBC1D9BQ66K14 1250 aa17.14■□□□□ 0.33
SHH-201ENST00000297261 BARGINQ6ZT62 677 aa17.14■□□□□ 0.33
SHH-201ENST00000297261 PGBD1Q96JS3 809 aa17.14■□□□□ 0.33
SHH-201ENST00000297261 GJD4Q96KN9 370 aaPredicted RBP17.14■□□□□ 0.33
SHH-201ENST00000297261 BLZF1Q9H2G9 400 aa17.14■□□□□ 0.33
SHH-201ENST00000297261 RIPOR2Q9Y4F9 1068 aa17.14■□□□□ 0.33
SHH-201ENST00000297261 hCG_1642624A0A1W2PR95 340 aa17.14■□□□□ 0.33
SHH-201ENST00000297261 E7EVH7 732 aa17.14■□□□□ 0.33
SHH-201ENST00000297261 VIMP08670 466 aaKnown RBP17.14■□□□□ 0.33
SHH-201ENST00000297261 HEATR3Q7Z4Q2 680 aa17.14■□□□□ 0.33
SHH-201ENST00000297261 CSGALNACT2Q8N6G5 542 aa17.14■□□□□ 0.33
SHH-201ENST00000297261 BAIAP2L1Q9UHR4 511 aa17.14■□□□□ 0.33
SHH-201ENST00000297261 DDIT3P35638 169 aa17.14■□□□□ 0.33
SHH-201ENST00000297261 ZNF34Q8IZ26 560 aa17.14■□□□□ 0.33
SHH-201ENST00000297261 ZNF274Q96GC6 653 aaPredicted RBP17.14■□□□□ 0.33
SHH-201ENST00000297261 NARFQ9UHQ1 456 aa17.14■□□□□ 0.33
SHH-201ENST00000297261 ZNF804BA4D1E1 1349 aa17.14■□□□□ 0.33
SHH-201ENST00000297261 NSUN7Q8NE18 718 aaKnown RBP17.13■□□□□ 0.33
SHH-201ENST00000297261 EEF2KMTQ96G04 330 aa17.13■□□□□ 0.33
SHH-201ENST00000297261 CAPS2Q9BXY5 557 aa17.13■□□□□ 0.33
SHH-201ENST00000297261 SAMD15Q9P1V8 674 aa17.13■□□□□ 0.33
SHH-201ENST00000297261 SAP30BPQ9UHR5 308 aaKnown RBP17.13■□□□□ 0.33
SHH-201ENST00000297261 PDIA3P30101 505 aaKnown RBP17.13■□□□□ 0.33
SHH-201ENST00000297261 DTHD1Q6ZMT9 781 aa17.13■□□□□ 0.33
SHH-201ENST00000297261 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.13■□□□□ 0.33
SHH-201ENST00000297261 CSF1RP07333 972 aa17.13■□□□□ 0.33
SHH-201ENST00000297261 MAGEA1P43355 309 aa17.13■□□□□ 0.33
SHH-201ENST00000297261 BANK1Q8NDB2 785 aa17.13■□□□□ 0.33
SHH-201ENST00000297261 RTL9Q8NET4 1388 aa17.13■□□□□ 0.33
SHH-201ENST00000297261 A0A1W2PQ27 194 aa17.13■□□□□ 0.33
SHH-201ENST00000297261 A0A1W2PQ64 194 aa17.13■□□□□ 0.33
SHH-201ENST00000297261 A0A1W2PQD8 194 aa17.13■□□□□ 0.33
SHH-201ENST00000297261 CAMTA2O94983 1202 aa17.13■□□□□ 0.33
SHH-201ENST00000297261 RTEL1Q9NZ71 1219 aa17.13■□□□□ 0.33
SHH-201ENST00000297261 BICDL2A1A5D9 508 aa17.12■□□□□ 0.33
SHH-201ENST00000297261 RNF40O75150 1001 aa17.12■□□□□ 0.33
SHH-201ENST00000297261 PPARAQ07869 468 aa17.12■□□□□ 0.33
SHH-201ENST00000297261 TRMT1LQ7Z2T5 733 aaKnown RBP17.12■□□□□ 0.33
SHH-201ENST00000297261 CCDC25Q86WR0 208 aa17.12■□□□□ 0.33
SHH-201ENST00000297261 PLA2G4DQ86XP0 818 aa17.12■□□□□ 0.33
SHH-201ENST00000297261 KLHL7Q8IXQ5 586 aa17.12■□□□□ 0.33
SHH-201ENST00000297261 ANKRD7Q92527 254 aa17.12■□□□□ 0.33
SHH-201ENST00000297261 TRIM31Q9BZY9 425 aa17.12■□□□□ 0.33
SHH-201ENST00000297261 V9GY48 417 aaPredicted RBP17.12■□□□□ 0.33
SHH-201ENST00000297261 RESTQ13127 1097 aa17.12■□□□□ 0.33
SHH-201ENST00000297261 IFT20Q8IY31 132 aa17.12■□□□□ 0.33
SHH-201ENST00000297261 OR8K1Q8NGG5 319 aa17.12■□□□□ 0.33
SHH-201ENST00000297261 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.12■□□□□ 0.33
SHH-201ENST00000297261 KCTD16Q68DU8 428 aa17.12■□□□□ 0.33
SHH-201ENST00000297261 TEX11Q8IYF3 940 aa17.12■□□□□ 0.33
SHH-201ENST00000297261 SAMM50Q9Y512 469 aa17.12■□□□□ 0.33
SHH-201ENST00000297261 USP17L12C9JPN9 530 aa17.11■□□□□ 0.33
SHH-201ENST00000297261 USP17L21D6R901 530 aa17.11■□□□□ 0.33
SHH-201ENST00000297261 GUCY2FP51841 1108 aa17.11■□□□□ 0.33
SHH-201ENST00000297261 TTC14Q96N46 770 aa17.11■□□□□ 0.33
SHH-201ENST00000297261 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.11■□□□□ 0.33
SHH-201ENST00000297261 A0A1W2PRG0 241 aa17.11■□□□□ 0.33
SHH-201ENST00000297261 A6NNZ2 444 aa17.11■□□□□ 0.33
SHH-201ENST00000297261 PRKAB2O43741 272 aa17.11■□□□□ 0.33
SHH-201ENST00000297261 COBLO75128 1261 aa17.11■□□□□ 0.33
SHH-201ENST00000297261 TUBB8Q3ZCM7 444 aa17.11■□□□□ 0.33
SHH-201ENST00000297261 CEP85LQ5SZL2 805 aa17.11■□□□□ 0.33
SHH-201ENST00000297261 ARHGEF1Q92888 912 aaKnown RBP17.11■□□□□ 0.33
SHH-201ENST00000297261 DEXIO95424 95 aa17.11■□□□□ 0.33
SHH-201ENST00000297261 SERPINB2P05120 415 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms