RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 SAMSN1Q9NSI8 373 aaKnown RBP11.81□□□□□ -0.52
LIMA1-201ENST00000341247 HOOK1Q9UJC3 728 aaKnown RBP11.81□□□□□ -0.52
LIMA1-201ENST00000341247 C6orf229H3BNL8 230 aa11.81□□□□□ -0.52
LIMA1-201ENST00000341247 CALM1P0DP23 149 aa11.81□□□□□ -0.52
LIMA1-201ENST00000341247 CALM2P0DP24 149 aa11.81□□□□□ -0.52
LIMA1-201ENST00000341247 CALM3P0DP25 149 aa11.81□□□□□ -0.52
LIMA1-201ENST00000341247 NOL10Q9BSC4 688 aaKnown RBP11.81□□□□□ -0.52
LIMA1-201ENST00000341247 NID2Q14112 1375 aa11.81□□□□□ -0.52
LIMA1-201ENST00000341247 ACTN4O43707 911 aaKnown RBP11.81□□□□□ -0.52
LIMA1-201ENST00000341247 DDAH1O94760 285 aa11.81□□□□□ -0.52
LIMA1-201ENST00000341247 GSDMDP57764 484 aa11.81□□□□□ -0.52
LIMA1-201ENST00000341247 NPY5RQ15761 445 aa11.81□□□□□ -0.52
LIMA1-201ENST00000341247 SPTY2D1Q68D10 685 aaPredicted RBP11.81□□□□□ -0.52
LIMA1-201ENST00000341247 HOMER1Q86YM7 354 aa11.81□□□□□ -0.52
LIMA1-201ENST00000341247 ZNF444Q8N0Y2 327 aaPredicted RBP11.81□□□□□ -0.52
LIMA1-201ENST00000341247 CCAR2Q8N163 923 aaKnown RBP11.81□□□□□ -0.52
LIMA1-201ENST00000341247 PLIN2Q99541 437 aa11.81□□□□□ -0.52
LIMA1-201ENST00000341247 VAT1LQ9HCJ6 419 aa11.81□□□□□ -0.52
LIMA1-201ENST00000341247 FAM237AA0A1B0GTK4 181 aa11.8□□□□□ -0.52
LIMA1-201ENST00000341247 IKBKBO14920 756 aa11.8□□□□□ -0.52
LIMA1-201ENST00000341247 ORC4O43929 436 aa11.8□□□□□ -0.52
LIMA1-201ENST00000341247 NEMFO60524 1076 aa11.8□□□□□ -0.52
LIMA1-201ENST00000341247 FAM177A1Q8N128 213 aaPredicted RBP11.8□□□□□ -0.52
LIMA1-201ENST00000341247 CCDC112Q8NEF3 446 aa11.8□□□□□ -0.52
LIMA1-201ENST00000341247 C12orf60Q5U649 245 aa11.8□□□□□ -0.52
LIMA1-201ENST00000341247 HEATR3Q7Z4Q2 680 aa11.8□□□□□ -0.52
LIMA1-201ENST00000341247 ZNF804AQ7Z570 1209 aa11.8□□□□□ -0.52
LIMA1-201ENST00000341247 WDR66Q8TBY9 1149 aa11.8□□□□□ -0.52
LIMA1-201ENST00000341247 TMX1Q9H3N1 280 aa11.8□□□□□ -0.52
LIMA1-201ENST00000341247 XDHP47989 1333 aa11.8□□□□□ -0.52
LIMA1-201ENST00000341247 ONECUT3O60422 494 aaPredicted RBP11.8□□□□□ -0.52
LIMA1-201ENST00000341247 SERPINB2P05120 415 aa11.8□□□□□ -0.52
LIMA1-201ENST00000341247 FGRP09769 529 aa11.8□□□□□ -0.52
LIMA1-201ENST00000341247 TOP1P11387 765 aaKnown RBP11.8□□□□□ -0.52
LIMA1-201ENST00000341247 GYS1P13807 737 aa11.8□□□□□ -0.52
LIMA1-201ENST00000341247 BTDP43251 543 aa11.8□□□□□ -0.52
LIMA1-201ENST00000341247 RCAN1P53805 252 aa11.8□□□□□ -0.52
LIMA1-201ENST00000341247 E4F1Q66K89 784 aaPredicted RBP11.8□□□□□ -0.52
LIMA1-201ENST00000341247 OSBPL5Q9H0X9 879 aaPredicted RBP11.8□□□□□ -0.52
LIMA1-201ENST00000341247 KIAA1551Q9HCM1 1747 aa11.79□□□□□ -0.52
LIMA1-201ENST00000341247 PICALMQ13492 652 aa11.79□□□□□ -0.52
LIMA1-201ENST00000341247 PPP2R5BQ15173 497 aa11.79□□□□□ -0.52
LIMA1-201ENST00000341247 MAPK8IP1Q9UQF2 711 aa11.79□□□□□ -0.52
LIMA1-201ENST00000341247 TRIM37O94972 964 aa11.79□□□□□ -0.52
LIMA1-201ENST00000341247 DDR1Q08345 913 aa11.79□□□□□ -0.52
LIMA1-201ENST00000341247 TYW1BQ6NUM6 668 aa11.79□□□□□ -0.52
LIMA1-201ENST00000341247 RASSF8Q8NHQ8 419 aa11.79□□□□□ -0.52
LIMA1-201ENST00000341247 FAM205AQ6ZU69 1335 aa11.79□□□□□ -0.52
LIMA1-201ENST00000341247 MYH6P13533 1939 aa11.79□□□□□ -0.52
LIMA1-201ENST00000341247 BAG3O95817 575 aa11.78□□□□□ -0.52
LIMA1-201ENST00000341247 MFSD14BQ5SR56 506 aa11.78□□□□□ -0.52
LIMA1-201ENST00000341247 AMOTL1Q8IY63 956 aa11.78□□□□□ -0.52
LIMA1-201ENST00000341247 MED15Q96RN5 788 aa11.78□□□□□ -0.52
LIMA1-201ENST00000341247 CD209Q9NNX6 404 aa11.78□□□□□ -0.52
LIMA1-201ENST00000341247 INTS13Q9NVM9 706 aa11.78□□□□□ -0.52
LIMA1-201ENST00000341247 ADKP55263 362 aaKnown RBP11.78□□□□□ -0.52
LIMA1-201ENST00000341247 EIF6P56537 245 aaKnown RBP11.78□□□□□ -0.52
LIMA1-201ENST00000341247 TEX11Q8IYF3 940 aa11.78□□□□□ -0.52
LIMA1-201ENST00000341247 CPLX3Q8WVH0 158 aa11.78□□□□□ -0.52
LIMA1-201ENST00000341247 PAGE5Q96GU1 130 aa11.78□□□□□ -0.52
LIMA1-201ENST00000341247 LEMD3Q9Y2U8 911 aa11.78□□□□□ -0.52
LIMA1-201ENST00000341247 SPATA31A6Q5VVP1 1343 aa11.78□□□□□ -0.52
LIMA1-201ENST00000341247 KIF5BP33176 963 aa11.78□□□□□ -0.52
LIMA1-201ENST00000341247 PFKFB3Q16875 520 aaPredicted RBP11.78□□□□□ -0.52
LIMA1-201ENST00000341247 CCDC150Q8NCX0 1101 aa11.78□□□□□ -0.52
LIMA1-201ENST00000341247 RGS22Q8NE09 1264 aa11.78□□□□□ -0.52
LIMA1-201ENST00000341247 IMPACTQ9P2X3 320 aa11.78□□□□□ -0.52
LIMA1-201ENST00000341247 GGA1Q9UJY5 639 aa11.78□□□□□ -0.52
LIMA1-201ENST00000341247 PP2D1A8MPX8 630 aa11.77□□□□□ -0.52
LIMA1-201ENST00000341247 CD44P16070 742 aaKnown RBP11.77□□□□□ -0.52
LIMA1-201ENST00000341247 MORC3Q14149 939 aa11.77□□□□□ -0.52
LIMA1-201ENST00000341247 SBK1Q52WX2 424 aa11.77□□□□□ -0.52
LIMA1-201ENST00000341247 SYT10Q6XYQ8 523 aa11.77□□□□□ -0.52
LIMA1-201ENST00000341247 MXD3Q9BW11 206 aa11.77□□□□□ -0.52
LIMA1-201ENST00000341247 PCP11498 1178 aaKnown RBP11.77□□□□□ -0.53
LIMA1-201ENST00000341247 IL17AQ16552 155 aa11.77□□□□□ -0.53
LIMA1-201ENST00000341247 CLEC10AQ8IUN9 316 aa11.77□□□□□ -0.53
LIMA1-201ENST00000341247 ZNF579Q8NAF0 562 aaKnown RBP11.77□□□□□ -0.53
LIMA1-201ENST00000341247 TNFRSF25Q93038 417 aa11.77□□□□□ -0.53
LIMA1-201ENST00000341247 POLLQ9UGP5 575 aa11.77□□□□□ -0.53
LIMA1-201ENST00000341247 CBFA2T2O43439 604 aa11.77□□□□□ -0.53
LIMA1-201ENST00000341247 SLURP2P0DP57 97 aa11.77□□□□□ -0.53
LIMA1-201ENST00000341247 GTF2F1P35269 517 aaKnown RBP eCLIP11.77□□□□□ -0.53
LIMA1-201ENST00000341247 GTF2IP78347 998 aa11.77□□□□□ -0.53
LIMA1-201ENST00000341247 ST5P78524 1137 aa11.77□□□□□ -0.53
LIMA1-201ENST00000341247 INF2Q27J81 1249 aa11.77□□□□□ -0.53
LIMA1-201ENST00000341247 SLC35G1Q2M3R5 365 aa11.77□□□□□ -0.53
LIMA1-201ENST00000341247 USP17L2Q6R6M4 530 aa11.77□□□□□ -0.53
LIMA1-201ENST00000341247 PPP1R13BQ96KQ4 1090 aa11.77□□□□□ -0.53
LIMA1-201ENST00000341247 TMEM47Q9BQJ4 181 aa11.77□□□□□ -0.53
LIMA1-201ENST00000341247 MKRN1Q9UHC7 482 aaKnown RBP11.77□□□□□ -0.53
LIMA1-201ENST00000341247 CYTH3O43739 400 aa11.76□□□□□ -0.53
LIMA1-201ENST00000341247 NRDCO43847 1150 aa11.76□□□□□ -0.53
LIMA1-201ENST00000341247 BLIDQ8IZY5 108 aa11.76□□□□□ -0.53
LIMA1-201ENST00000341247 CCDC194A0A1B0GVG4 234 aa11.76□□□□□ -0.53
LIMA1-201ENST00000341247 SLFN14P0C7P3 912 aa11.76□□□□□ -0.53
LIMA1-201ENST00000341247 SARSP49591 514 aaKnown RBP11.76□□□□□ -0.53
LIMA1-201ENST00000341247 KARSQ15046 597 aaKnown RBP11.76□□□□□ -0.53
LIMA1-201ENST00000341247 VSTM4Q8IW00 320 aa11.76□□□□□ -0.53
LIMA1-201ENST00000341247 MLKLQ8NB16 471 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms