RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 KAT14Q9H8E8 782 aa17.86■□□□□ 0.45
SS18-215ENST00000580642 GPHNQ9NQX3 736 aaPredicted RBP17.86■□□□□ 0.45
SS18-215ENST00000580642 RBM28Q9NW13 759 aaKnown RBP17.86■□□□□ 0.45
SS18-215ENST00000580642 NYAP2Q9P242 653 aa17.86■□□□□ 0.45
SS18-215ENST00000580642 HPS5Q9UPZ3 1129 aa17.86■□□□□ 0.45
SS18-215ENST00000580642 KIF3AQ9Y496 699 aa17.86■□□□□ 0.45
SS18-215ENST00000580642 ASTN2O75129 1339 aaPredicted RBP17.85■□□□□ 0.45
SS18-215ENST00000580642 VEGFAP15692 232 aaPredicted RBP17.85■□□□□ 0.45
SS18-215ENST00000580642 SLC4A3P48751 1232 aa17.85■□□□□ 0.45
SS18-215ENST00000580642 METAP2P50579 478 aaKnown RBP eCLIP17.85■□□□□ 0.45
SS18-215ENST00000580642 SCRN1Q12765 414 aa17.85■□□□□ 0.45
SS18-215ENST00000580642 TROAPQ12815 778 aa17.85■□□□□ 0.45
SS18-215ENST00000580642 CEP95Q96GE4 821 aa17.85■□□□□ 0.45
SS18-215ENST00000580642 SIPA1L1O43166 1804 aa17.84■□□□□ 0.45
SS18-215ENST00000580642 POTECB2RU33 542 aa17.84■□□□□ 0.45
SS18-215ENST00000580642 CTNND1O60716 968 aaKnown RBP17.84■□□□□ 0.45
SS18-215ENST00000580642 LARGE1O95461 756 aa17.84■□□□□ 0.45
SS18-215ENST00000580642 ASNSP08243 561 aa17.84■□□□□ 0.45
SS18-215ENST00000580642 KIF5BP33176 963 aa17.84■□□□□ 0.45
SS18-215ENST00000580642 DDIT3P35638 169 aa17.84■□□□□ 0.45
SS18-215ENST00000580642 CAP2P40123 477 aa17.84■□□□□ 0.45
SS18-215ENST00000580642 GNAQP50148 359 aa17.84■□□□□ 0.45
SS18-215ENST00000580642 CCDC83Q8IWF9 413 aa17.84■□□□□ 0.45
SS18-215ENST00000580642 FANCBQ8NB91 859 aa17.84■□□□□ 0.45
SS18-215ENST00000580642 ZNF341Q9BYN7 854 aa17.84■□□□□ 0.45
SS18-215ENST00000580642 ZNF112Q9UJU3 913 aa17.84■□□□□ 0.45
SS18-215ENST00000580642 SMC3Q9UQE7 1217 aa17.84■□□□□ 0.45
SS18-215ENST00000580642 CPLX1O14810 134 aa17.83■□□□□ 0.44
SS18-215ENST00000580642 PDCP20941 246 aa17.83■□□□□ 0.44
SS18-215ENST00000580642 NECAB1Q8N987 351 aa17.83■□□□□ 0.44
SS18-215ENST00000580642 PNMA1Q8ND90 353 aa17.83■□□□□ 0.44
SS18-215ENST00000580642 SMARCC2Q8TAQ2 1214 aa17.83■□□□□ 0.44
SS18-215ENST00000580642 TMEM47Q9BQJ4 181 aa17.83■□□□□ 0.44
SS18-215ENST00000580642 LZTS2Q9BRK4 669 aa17.83■□□□□ 0.44
SS18-215ENST00000580642 LARP6Q9BRS8 491 aaKnown RBP17.83■□□□□ 0.44
SS18-215ENST00000580642 STX8Q9UNK0 236 aa17.83■□□□□ 0.44
SS18-215ENST00000580642 GOLGA8AA7E2F4 631 aa17.82■□□□□ 0.44
SS18-215ENST00000580642 PHF20L1A8MW92 1017 aa17.82■□□□□ 0.44
SS18-215ENST00000580642 MPHOSPH10O00566 681 aaKnown RBP17.82■□□□□ 0.44
SS18-215ENST00000580642 NMT2O60551 498 aa17.82■□□□□ 0.44
SS18-215ENST00000580642 SMARCA1P28370 1054 aa17.82■□□□□ 0.44
SS18-215ENST00000580642 ST3GAL1Q11201 340 aa17.82■□□□□ 0.44
SS18-215ENST00000580642 RTN1Q16799 776 aa17.82■□□□□ 0.44
SS18-215ENST00000580642 NBPF12Q5TAG4 269 aaPredicted RBP17.82■□□□□ 0.44
SS18-215ENST00000580642 CDC37L1Q7L3B6 337 aa17.82■□□□□ 0.44
SS18-215ENST00000580642 KRT26Q7Z3Y9 468 aa17.82■□□□□ 0.44
SS18-215ENST00000580642 MICU3Q86XE3 530 aa17.82■□□□□ 0.44
SS18-215ENST00000580642 CTCFLQ8NI51 663 aaPredicted RBP17.82■□□□□ 0.44
SS18-215ENST00000580642 SH2D4AQ9H788 454 aa17.82■□□□□ 0.44
SS18-215ENST00000580642 SENP2Q9HC62 589 aa17.82■□□□□ 0.44
SS18-215ENST00000580642 NAP1L2Q9ULW6 460 aaPredicted RBP17.82■□□□□ 0.44
SS18-215ENST00000580642 GREB1LQ9C091 1923 aaPredicted RBP17.81■□□□□ 0.44
SS18-215ENST00000580642 IFNAR1P17181 557 aa17.81■□□□□ 0.44
SS18-215ENST00000580642 NUCB2P80303 420 aa17.81■□□□□ 0.44
SS18-215ENST00000580642 STK3Q13188 491 aa17.81■□□□□ 0.44
SS18-215ENST00000580642 CHMP5Q9NZZ3 219 aa17.81■□□□□ 0.44
SS18-215ENST00000580642 RBM27Q9P2N5 1060 aaKnown RBP17.81■□□□□ 0.44
SS18-215ENST00000580642 ZBTB21Q9ULJ3 1066 aa17.81■□□□□ 0.44
SS18-215ENST00000580642 STK36Q9NRP7 1315 aa17.8■□□□□ 0.44
SS18-215ENST00000580642 UNCXA6NJT0 531 aa17.8■□□□□ 0.44
SS18-215ENST00000580642 FAM196BA6NMK8 535 aa17.8■□□□□ 0.44
SS18-215ENST00000580642 GH2P01242 217 aa17.8■□□□□ 0.44
SS18-215ENST00000580642 NF2P35240 595 aa17.8■□□□□ 0.44
SS18-215ENST00000580642 CCT2P78371 535 aaKnown RBP17.8■□□□□ 0.44
SS18-215ENST00000580642 ICA1Q05084 483 aa17.8■□□□□ 0.44
SS18-215ENST00000580642 USP48Q86UV5 1035 aa17.8■□□□□ 0.44
SS18-215ENST00000580642 CDAN1Q8IWY9 1227 aa17.8■□□□□ 0.44
SS18-215ENST00000580642 NSUN7Q8NE18 718 aaKnown RBP17.8■□□□□ 0.44
SS18-215ENST00000580642 GMCL1P1Q8NEA9 526 aa17.8■□□□□ 0.44
SS18-215ENST00000580642 ARHGEF10LQ9HCE6 1279 aa17.8■□□□□ 0.44
SS18-215ENST00000580642 UTRNP46939 3433 aa17.79■□□□□ 0.44
SS18-215ENST00000580642 PPP1R12BO60237 982 aaPredicted RBP17.79■□□□□ 0.44
SS18-215ENST00000580642 SNHG28P0DPA3 235 aa17.79■□□□□ 0.44
SS18-215ENST00000580642 GUCY1A2P33402 732 aa17.79■□□□□ 0.44
SS18-215ENST00000580642 GRM4Q14833 912 aa17.79■□□□□ 0.44
SS18-215ENST00000580642 NOL9Q5SY16 702 aaKnown RBP17.79■□□□□ 0.44
SS18-215ENST00000580642 MIGA2Q7L4E1 593 aa17.79■□□□□ 0.44
SS18-215ENST00000580642 LDHDQ86WU2 507 aa17.79■□□□□ 0.44
SS18-215ENST00000580642 NUP133Q8WUM0 1156 aa17.79■□□□□ 0.44
SS18-215ENST00000580642 WASF1Q92558 559 aa17.79■□□□□ 0.44
SS18-215ENST00000580642 FAM217BQ9NTX9 383 aaPredicted RBP17.79■□□□□ 0.44
SS18-215ENST00000580642 CLIP2Q9UDT6 1046 aa17.79■□□□□ 0.44
SS18-215ENST00000580642 SEPT2Q15019 361 aa17.78■□□□□ 0.44
SS18-215ENST00000580642 NTRK3Q16288 839 aa17.78■□□□□ 0.44
SS18-215ENST00000580642 ASPRV1Q53RT3 343 aa17.78■□□□□ 0.44
SS18-215ENST00000580642 TRIM22Q8IYM9 498 aa17.78■□□□□ 0.44
SS18-215ENST00000580642 KLRG1Q96E93 195 aa17.78■□□□□ 0.44
SS18-215ENST00000580642 MYH8P13535 1937 aa17.78■□□□□ 0.44
SS18-215ENST00000580642 PTPDC1A2A3K4 754 aa17.77■□□□□ 0.44
SS18-215ENST00000580642 PALM3A6NDB9 673 aaPredicted RBP17.77■□□□□ 0.44
SS18-215ENST00000580642 GDF11O95390 407 aa17.77■□□□□ 0.44
SS18-215ENST00000580642 CTDNEP1O95476 244 aa17.77■□□□□ 0.44
SS18-215ENST00000580642 EEF2P13639 858 aaKnown RBP17.77■□□□□ 0.44
SS18-215ENST00000580642 GJB2P29033 226 aa17.77■□□□□ 0.44
SS18-215ENST00000580642 CDC27P30260 824 aa17.77■□□□□ 0.44
SS18-215ENST00000580642 ADD1P35611 737 aaKnown RBP17.77■□□□□ 0.44
SS18-215ENST00000580642 RRP1BQ14684 758 aaKnown RBP17.77■□□□□ 0.44
SS18-215ENST00000580642 EAPPQ56P03 285 aaPredicted RBP17.77■□□□□ 0.44
SS18-215ENST00000580642 GPATCH4Q5T3I0 446 aaKnown RBP17.77■□□□□ 0.44
SS18-215ENST00000580642 TMTC3Q6ZXV5 915 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms