RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 CDC23Q9UJX2 597 aa14.72□□□□□ -0.05
USP40-208ENST00000450966 CFAP221Q4G0U5 840 aa14.72□□□□□ -0.05
USP40-208ENST00000450966 LINS1Q8NG48 757 aa14.72□□□□□ -0.05
USP40-208ENST00000450966 P3H4Q92791 437 aa14.72□□□□□ -0.05
USP40-208ENST00000450966 CCDC51Q96ER9 411 aa14.72□□□□□ -0.05
USP40-208ENST00000450966 NEK1Q96PY6 1258 aa14.72□□□□□ -0.05
USP40-208ENST00000450966 PLEKHA4Q9H4M7 779 aa14.72□□□□□ -0.05
USP40-208ENST00000450966 KAT14Q9H8E8 782 aa14.72□□□□□ -0.05
USP40-208ENST00000450966 UTP6Q9NYH9 597 aaKnown RBP14.72□□□□□ -0.05
USP40-208ENST00000450966 PPP1R13BQ96KQ4 1090 aa14.71□□□□□ -0.05
USP40-208ENST00000450966 USP26Q9BXU7 913 aa14.71□□□□□ -0.05
USP40-208ENST00000450966 DNAJC5Q9H3Z4 198 aa14.71□□□□□ -0.05
USP40-208ENST00000450966 TCP11L1Q9NUJ3 509 aa14.71□□□□□ -0.05
USP40-208ENST00000450966 PPP2R2CQ9Y2T4 447 aa14.71□□□□□ -0.05
USP40-208ENST00000450966 UBXN1Q04323 297 aa14.71□□□□□ -0.05
USP40-208ENST00000450966 DRP2Q13474 957 aa14.71□□□□□ -0.05
USP40-208ENST00000450966 KRT23Q9C075 422 aa14.71□□□□□ -0.05
USP40-208ENST00000450966 EFCAB6Q5THR3 1501 aa14.71□□□□□ -0.05
USP40-208ENST00000450966 PLEKHG3A1L390 1219 aa14.71□□□□□ -0.05
USP40-208ENST00000450966 RNMTO43148 476 aaKnown RBP14.71□□□□□ -0.05
USP40-208ENST00000450966 CTNNA1P35221 906 aaKnown RBP14.71□□□□□ -0.05
USP40-208ENST00000450966 ESRRGP62508 458 aa14.71□□□□□ -0.05
USP40-208ENST00000450966 APOBRQ0VD83 1088 aa14.71□□□□□ -0.05
USP40-208ENST00000450966 CXorf38Q8TB03 319 aa14.71□□□□□ -0.05
USP40-208ENST00000450966 CABLES1Q8TDN4 633 aa14.71□□□□□ -0.05
USP40-208ENST00000450966 ETAA1Q9NY74 926 aa14.71□□□□□ -0.05
USP40-208ENST00000450966 SYNCQ9H7C4 482 aa14.71□□□□□ -0.06
USP40-208ENST00000450966 CCDC82Q8N4S0 544 aa14.7□□□□□ -0.06
USP40-208ENST00000450966 PARD6BQ9BYG5 372 aa14.7□□□□□ -0.06
USP40-208ENST00000450966 H0YIN7 160 aa14.7□□□□□ -0.06
USP40-208ENST00000450966 KMT5BQ4FZB7 885 aa14.7□□□□□ -0.06
USP40-208ENST00000450966 COPS6Q7L5N1 327 aa14.7□□□□□ -0.06
USP40-208ENST00000450966 MAP7D3Q8IWC1 876 aa14.7□□□□□ -0.06
USP40-208ENST00000450966 NUB1Q9Y5A7 615 aa14.7□□□□□ -0.06
USP40-208ENST00000450966 ABCA8O94911 1581 aa14.7□□□□□ -0.06
USP40-208ENST00000450966 BICDL2A1A5D9 508 aa14.7□□□□□ -0.06
USP40-208ENST00000450966 F6X3S4 739 aa14.7□□□□□ -0.06
USP40-208ENST00000450966 PSMA7O14818 248 aa14.7□□□□□ -0.06
USP40-208ENST00000450966 ANKRD7Q92527 254 aa14.7□□□□□ -0.06
USP40-208ENST00000450966 ZNF711Q9Y462 761 aa14.7□□□□□ -0.06
USP40-208ENST00000450966 BRD1O95696 1058 aa14.69□□□□□ -0.06
USP40-208ENST00000450966 ATP2A3Q93084 1043 aa14.69□□□□□ -0.06
USP40-208ENST00000450966 PSD3Q9NYI0 1048 aa14.69□□□□□ -0.06
USP40-208ENST00000450966 PLXNC1O60486 1568 aa14.69□□□□□ -0.06
USP40-208ENST00000450966 TSPY2A6NKD2 308 aa14.69□□□□□ -0.06
USP40-208ENST00000450966 GRM8O00222 908 aa14.69□□□□□ -0.06
USP40-208ENST00000450966 RGS16O15492 202 aaPredicted RBP14.69□□□□□ -0.06
USP40-208ENST00000450966 ACTN3Q08043 901 aaPredicted RBP14.69□□□□□ -0.06
USP40-208ENST00000450966 CLUL1Q15846 466 aa14.69□□□□□ -0.06
USP40-208ENST00000450966 ACRBPQ8NEB7 543 aa14.69□□□□□ -0.06
USP40-208ENST00000450966 TXLNGQ9NUQ3 528 aa14.69□□□□□ -0.06
USP40-208ENST00000450966 GADD45BO75293 160 aaPredicted RBP14.69□□□□□ -0.06
USP40-208ENST00000450966 RNASELQ05823 741 aaKnown RBP14.69□□□□□ -0.06
USP40-208ENST00000450966 TEX9Q8N6V9 391 aa14.69□□□□□ -0.06
USP40-208ENST00000450966 NECAB1Q8N987 351 aa14.69□□□□□ -0.06
USP40-208ENST00000450966 BAG2O95816 211 aa14.69□□□□□ -0.06
USP40-208ENST00000450966 CHGBP05060 677 aa14.69□□□□□ -0.06
USP40-208ENST00000450966 ALDH1B1P30837 517 aa14.69□□□□□ -0.06
USP40-208ENST00000450966 CCDC25Q86WR0 208 aa14.69□□□□□ -0.06
USP40-208ENST00000450966 CEP70Q8NHQ1 597 aa14.69□□□□□ -0.06
USP40-208ENST00000450966 GPT2Q8TD30 523 aa14.69□□□□□ -0.06
USP40-208ENST00000450966 ANTXR1Q9H6X2 564 aa14.69□□□□□ -0.06
USP40-208ENST00000450966 ERVV-2B6SEH9 535 aa14.69□□□□□ -0.06
USP40-208ENST00000450966 SLC8A3P57103 927 aa14.69□□□□□ -0.06
USP40-208ENST00000450966 CASP8Q14790 479 aa14.69□□□□□ -0.06
USP40-208ENST00000450966 NAIF1Q69YI7 327 aaPredicted RBP14.69□□□□□ -0.06
USP40-208ENST00000450966 BEGAINQ9BUH8 593 aa14.69□□□□□ -0.06
USP40-208ENST00000450966 POLKQ9UBT6 870 aa14.69□□□□□ -0.06
USP40-208ENST00000450966 TSC22D4Q9Y3Q8 395 aa14.69□□□□□ -0.06
USP40-208ENST00000450966 ATP5J2-PTCD1G3V325 749 aa14.68□□□□□ -0.06
USP40-208ENST00000450966 STX2P32856 288 aa14.68□□□□□ -0.06
USP40-208ENST00000450966 IARSP41252 1262 aaKnown RBP14.68□□□□□ -0.06
USP40-208ENST00000450966 LAMB3Q13751 1172 aa14.68□□□□□ -0.06
USP40-208ENST00000450966 MFSD6Q6ZSS7 791 aa14.68□□□□□ -0.06
USP40-208ENST00000450966 FERMT2Q96AC1 680 aa14.68□□□□□ -0.06
USP40-208ENST00000450966 GDAP1L1Q96MZ0 367 aa14.68□□□□□ -0.06
USP40-208ENST00000450966 ITGB1BP2Q9UKP3 347 aa14.68□□□□□ -0.06
USP40-208ENST00000450966 HHATQ5VTY9 493 aa14.68□□□□□ -0.06
USP40-208ENST00000450966 PDLIM2Q96JY6 352 aa14.68□□□□□ -0.06
USP40-208ENST00000450966 HGSO14964 777 aaPredicted RBP14.68□□□□□ -0.06
USP40-208ENST00000450966 SLFN14P0C7P3 912 aa14.68□□□□□ -0.06
USP40-208ENST00000450966 CA8P35219 290 aa14.68□□□□□ -0.06
USP40-208ENST00000450966 TMEM67Q5HYA8 995 aa14.68□□□□□ -0.06
USP40-208ENST00000450966 DENND2CQ68D51 928 aa14.68□□□□□ -0.06
USP40-208ENST00000450966 ANGPTL2Q9UKU9 493 aa14.68□□□□□ -0.06
USP40-208ENST00000450966 APBA3O96018 575 aa14.68□□□□□ -0.06
USP40-208ENST00000450966 PPM1FP49593 454 aaPredicted RBP14.68□□□□□ -0.06
USP40-208ENST00000450966 NLRP12P59046 1061 aa14.68□□□□□ -0.06
USP40-208ENST00000450966 CCT2P78371 535 aaKnown RBP14.68□□□□□ -0.06
USP40-208ENST00000450966 SLC44A4Q53GD3 710 aa14.68□□□□□ -0.06
USP40-208ENST00000450966 ANKRD65E5RJM6 399 aa14.67□□□□□ -0.06
USP40-208ENST00000450966 STXBP3O00186 592 aa14.67□□□□□ -0.06
USP40-208ENST00000450966 RXRBP28702 533 aa14.67□□□□□ -0.06
USP40-208ENST00000450966 MYO1EQ12965 1108 aa14.67□□□□□ -0.06
USP40-208ENST00000450966 NOX5Q96PH1 765 aa14.67□□□□□ -0.06
USP40-208ENST00000450966 GFAPP14136 432 aa14.67□□□□□ -0.06
USP40-208ENST00000450966 ALS2CLQ60I27 953 aa14.67□□□□□ -0.06
USP40-208ENST00000450966 PHBP35232 272 aa14.67□□□□□ -0.06
USP40-208ENST00000450966 CNOT10Q9H9A5 744 aaKnown RBP14.67□□□□□ -0.06
USP40-208ENST00000450966 MAN1A2O60476 641 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms