RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 ZNF215Q9UL58 517 aaPredicted RBP11.77□□□□□ -0.53
LIG1-220ENST00000601091 TPX2Q9ULW0 747 aaKnown RBP11.77□□□□□ -0.53
LIG1-220ENST00000601091 ADORA1P30542 326 aa11.76□□□□□ -0.53
LIG1-220ENST00000601091 CCDC15Q0P6D6 951 aa11.76□□□□□ -0.53
LIG1-220ENST00000601091 CAGE1Q8TC20 777 aa11.76□□□□□ -0.53
LIG1-220ENST00000601091 TRAIPQ9BWF2 469 aa11.76□□□□□ -0.53
LIG1-220ENST00000601091 RFX7Q2KHR2 1363 aa11.76□□□□□ -0.53
LIG1-220ENST00000601091 USP27XA6NNY8 438 aa11.76□□□□□ -0.53
LIG1-220ENST00000601091 DBN1Q16643 649 aa11.76□□□□□ -0.53
LIG1-220ENST00000601091 RABL6Q3YEC7 729 aaPredicted RBP11.76□□□□□ -0.53
LIG1-220ENST00000601091 LINC00301Q8NCQ3 95 aa11.76□□□□□ -0.53
LIG1-220ENST00000601091 LPIN2Q92539 896 aa11.76□□□□□ -0.53
LIG1-220ENST00000601091 NPHP4O75161 1426 aaPredicted RBP11.76□□□□□ -0.53
LIG1-220ENST00000601091 PPFIA4O75335 1185 aa11.76□□□□□ -0.53
LIG1-220ENST00000601091 IFIT1BQ5T764 474 aaKnown RBP11.76□□□□□ -0.53
LIG1-220ENST00000601091 DIS3L2Q8IYB7 885 aaKnown RBP11.76□□□□□ -0.53
LIG1-220ENST00000601091 MIGA1Q8NAN2 632 aa11.76□□□□□ -0.53
LIG1-220ENST00000601091 ZKSCAN3Q9BRR0 538 aa11.76□□□□□ -0.53
LIG1-220ENST00000601091 RANBP17Q9H2T7 1088 aaKnown RBP11.76□□□□□ -0.53
LIG1-220ENST00000601091 POLR3EQ9NVU0 708 aa11.76□□□□□ -0.53
LIG1-220ENST00000601091 HEG1Q9ULI3 1381 aa11.75□□□□□ -0.53
LIG1-220ENST00000601091 M0R2C6 588 aa11.75□□□□□ -0.53
LIG1-220ENST00000601091 TERF2Q15554 542 aa11.75□□□□□ -0.53
LIG1-220ENST00000601091 SLFNL1Q499Z3 407 aa11.75□□□□□ -0.53
LIG1-220ENST00000601091 KAZALD1Q96I82 304 aa11.75□□□□□ -0.53
LIG1-220ENST00000601091 AK7Q96M32 723 aa11.75□□□□□ -0.53
LIG1-220ENST00000601091 PYM1Q9BRP8 204 aaKnown RBP11.75□□□□□ -0.53
LIG1-220ENST00000601091 MYL10Q9BUA6 226 aa11.75□□□□□ -0.53
LIG1-220ENST00000601091 LRRC27Q9C0I9 530 aa11.75□□□□□ -0.53
LIG1-220ENST00000601091 DIS3Q9Y2L1 958 aaKnown RBP11.75□□□□□ -0.53
LIG1-220ENST00000601091 EIF3JO75822 258 aaKnown RBP11.75□□□□□ -0.53
LIG1-220ENST00000601091 NUTM2AQ8IVF1 878 aaPredicted RBP11.75□□□□□ -0.53
LIG1-220ENST00000601091 CCDC12Q8WUD4 166 aaPredicted RBP11.75□□□□□ -0.53
LIG1-220ENST00000601091 DHX58Q96C10 678 aa11.75□□□□□ -0.53
LIG1-220ENST00000601091 IL17RAQ96F46 866 aa11.75□□□□□ -0.53
LIG1-220ENST00000601091 UBAP1Q9NZ09 502 aa11.75□□□□□ -0.53
LIG1-220ENST00000601091 MED23Q9ULK4 1368 aa11.75□□□□□ -0.53
LIG1-220ENST00000601091 CREB3O43889 395 aa11.75□□□□□ -0.53
LIG1-220ENST00000601091 PDIA6Q15084 440 aa11.75□□□□□ -0.53
LIG1-220ENST00000601091 SMARCC2Q8TAQ2 1214 aa11.75□□□□□ -0.53
LIG1-220ENST00000601091 TAF4BQ92750 862 aa11.75□□□□□ -0.53
LIG1-220ENST00000601091 CTAGE1Q96RT6 745 aa11.75□□□□□ -0.53
LIG1-220ENST00000601091 SPOCK3Q9BQ16 436 aa11.75□□□□□ -0.53
LIG1-220ENST00000601091 DEXIO95424 95 aa11.74□□□□□ -0.53
LIG1-220ENST00000601091 MAP9Q49MG5 647 aa11.74□□□□□ -0.53
LIG1-220ENST00000601091 AKNAD1Q5T1N1 836 aa11.74□□□□□ -0.53
LIG1-220ENST00000601091 SOGA3Q5TF21 947 aa11.74□□□□□ -0.53
LIG1-220ENST00000601091 CDK5RAP3Q96JB5 506 aa11.74□□□□□ -0.53
LIG1-220ENST00000601091 NUP88Q99567 741 aaPredicted RBP11.74□□□□□ -0.53
LIG1-220ENST00000601091 ARMT1Q9H993 441 aa11.74□□□□□ -0.53
LIG1-220ENST00000601091 MKNK2Q9HBH9 465 aa11.74□□□□□ -0.53
LIG1-220ENST00000601091 KLHL42Q9P2K6 505 aa11.74□□□□□ -0.53
LIG1-220ENST00000601091 ITM2BQ9Y287 266 aa11.74□□□□□ -0.53
LIG1-220ENST00000601091 TAF6LQ9Y6J9 622 aa11.74□□□□□ -0.53
LIG1-220ENST00000601091 N4BP3O15049 544 aa11.74□□□□□ -0.53
LIG1-220ENST00000601091 EIF5P55010 431 aaKnown RBP11.74□□□□□ -0.53
LIG1-220ENST00000601091 RBBP5Q15291 538 aaKnown RBP11.74□□□□□ -0.53
LIG1-220ENST00000601091 OGFOD1Q8N543 542 aa11.74□□□□□ -0.53
LIG1-220ENST00000601091 METTL14Q9HCE5 456 aaKnown RBP11.74□□□□□ -0.53
LIG1-220ENST00000601091 CABP5Q9NP86 173 aa11.74□□□□□ -0.53
LIG1-220ENST00000601091 MYO1CO00159 1063 aa11.74□□□□□ -0.53
LIG1-220ENST00000601091 POLR2DO15514 142 aaKnown RBP11.74□□□□□ -0.53
LIG1-220ENST00000601091 SLFN14P0C7P3 912 aa11.74□□□□□ -0.53
LIG1-220ENST00000601091 KIF5BP33176 963 aa11.74□□□□□ -0.53
LIG1-220ENST00000601091 SLC39A14Q15043 492 aa11.74□□□□□ -0.53
LIG1-220ENST00000601091 CCDC144BQ3MJ40 725 aa11.74□□□□□ -0.53
LIG1-220ENST00000601091 BAG1Q99933 345 aaPredicted RBP11.74□□□□□ -0.53
LIG1-220ENST00000601091 ZMYM6O95789 1325 aa11.73□□□□□ -0.53
LIG1-220ENST00000601091 MAGEB6P1A0A0J9YX57 407 aa11.73□□□□□ -0.53
LIG1-220ENST00000601091 CCDC194A0A1B0GVG4 234 aa11.73□□□□□ -0.53
LIG1-220ENST00000601091 TSPY2A6NKD2 308 aa11.73□□□□□ -0.53
LIG1-220ENST00000601091 PDE6AP16499 860 aa11.73□□□□□ -0.53
LIG1-220ENST00000601091 SARM1Q6SZW1 724 aa11.73□□□□□ -0.53
LIG1-220ENST00000601091 MLKLQ8NB16 471 aa11.73□□□□□ -0.53
LIG1-220ENST00000601091 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.73□□□□□ -0.53
LIG1-220ENST00000601091 CRACR2AQ9BSW2 395 aa11.73□□□□□ -0.53
LIG1-220ENST00000601091 WWC3Q9ULE0 1092 aa11.73□□□□□ -0.53
LIG1-220ENST00000601091 NIP7Q9Y221 180 aaKnown RBP eCLIP11.73□□□□□ -0.53
LIG1-220ENST00000601091 TCHHQ07283 1943 aa11.73□□□□□ -0.53
LIG1-220ENST00000601091 USP5P45974 858 aa11.73□□□□□ -0.53
LIG1-220ENST00000601091 CTSWP56202 376 aa11.73□□□□□ -0.53
LIG1-220ENST00000601091 UBE3CQ15386 1083 aa11.73□□□□□ -0.53
LIG1-220ENST00000601091 DPCR1Q3MIW9 517 aa11.73□□□□□ -0.53
LIG1-220ENST00000601091 SPECC1Q5M775 1068 aa11.73□□□□□ -0.53
LIG1-220ENST00000601091 PLA2G4DQ86XP0 818 aa11.73□□□□□ -0.53
LIG1-220ENST00000601091 ANKRD18AQ8IVF6 992 aa11.73□□□□□ -0.53
LIG1-220ENST00000601091 SPATA5Q8NB90 893 aa11.73□□□□□ -0.53
LIG1-220ENST00000601091 GPHNQ9NQX3 736 aaPredicted RBP11.73□□□□□ -0.53
LIG1-220ENST00000601091 PPFIA2O75334 1257 aa11.73□□□□□ -0.53
LIG1-220ENST00000601091 CTDSPL2Q05D32 466 aa11.73□□□□□ -0.53
LIG1-220ENST00000601091 PDE4BQ07343 736 aa11.73□□□□□ -0.53
LIG1-220ENST00000601091 KCNA1Q09470 495 aa11.73□□□□□ -0.53
LIG1-220ENST00000601091 IQCGQ9H095 443 aaKnown RBP11.73□□□□□ -0.53
LIG1-220ENST00000601091 PUS7LQ9H0K6 701 aaKnown RBP11.73□□□□□ -0.53
LIG1-220ENST00000601091 ZSWIM4Q9H7M6 989 aa11.73□□□□□ -0.53
LIG1-220ENST00000601091 CALM1P0DP23 149 aa11.72□□□□□ -0.53
LIG1-220ENST00000601091 CALM2P0DP24 149 aa11.72□□□□□ -0.53
LIG1-220ENST00000601091 CALM3P0DP25 149 aa11.72□□□□□ -0.53
LIG1-220ENST00000601091 GBP3Q9H0R5 595 aa11.72□□□□□ -0.53
LIG1-220ENST00000601091 SPATS2LQ9NUQ6 558 aaKnown RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms