RNA–Protein interactions for RNA: ENST00000543356.6

GNE-206, Transcript of glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase, humanhuman

TSL 1 (best) BASIC

Gene GNE, Length 2,576 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GNE-206ENST00000543356 CHAMP1Q96JM3 812 aa10.88□□□□□ -0.67
GNE-206ENST00000543356 MYL10Q9BUA6 226 aa10.88□□□□□ -0.67
GNE-206ENST00000543356 TCP11L1Q9NUJ3 509 aa10.88□□□□□ -0.67
GNE-206ENST00000543356 ORC3Q9UBD5 711 aaPredicted RBP10.88□□□□□ -0.67
GNE-206ENST00000543356 ARFGEF1Q9Y6D6 1849 aa10.88□□□□□ -0.67
GNE-206ENST00000543356 PRPF40AO75400 957 aaKnown RBP10.87□□□□□ -0.67
GNE-206ENST00000543356 CALM1P0DP23 149 aa10.87□□□□□ -0.67
GNE-206ENST00000543356 CALM2P0DP24 149 aa10.87□□□□□ -0.67
GNE-206ENST00000543356 CALM3P0DP25 149 aa10.87□□□□□ -0.67
GNE-206ENST00000543356 RXRAP19793 462 aa10.87□□□□□ -0.67
GNE-206ENST00000543356 ADD1P35611 737 aaKnown RBP10.87□□□□□ -0.67
GNE-206ENST00000543356 KIAA0825Q8IV33 1275 aa10.87□□□□□ -0.67
GNE-206ENST00000543356 LARGE2Q8N3Y3 721 aa10.87□□□□□ -0.67
GNE-206ENST00000543356 ANKS1AQ92625 1134 aa10.87□□□□□ -0.67
GNE-206ENST00000543356 MKNK2Q9HBH9 465 aa10.87□□□□□ -0.67
GNE-206ENST00000543356 NPM3O75607 178 aaKnown RBP10.87□□□□□ -0.67
GNE-206ENST00000543356 IFNAR1P17181 557 aa10.87□□□□□ -0.67
GNE-206ENST00000543356 PTGER2P43116 358 aa10.87□□□□□ -0.67
GNE-206ENST00000543356 CSPP1Q1MSJ5 1256 aa10.87□□□□□ -0.67
GNE-206ENST00000543356 FAM47AQ5JRC9 791 aa10.87□□□□□ -0.67
GNE-206ENST00000543356 CATIPQ7Z7H3 387 aa10.87□□□□□ -0.67
GNE-206ENST00000543356 ZNF277Q9NRM2 450 aaPredicted RBP10.87□□□□□ -0.67
GNE-206ENST00000543356 MYH8P13535 1937 aa10.87□□□□□ -0.67
GNE-206ENST00000543356 FMNL1O95466 1100 aaPredicted RBP10.86□□□□□ -0.67
GNE-206ENST00000543356 RASA1P20936 1047 aa10.86□□□□□ -0.67
GNE-206ENST00000543356 IARSP41252 1262 aaKnown RBP10.86□□□□□ -0.67
GNE-206ENST00000543356 CDK8P49336 464 aa10.86□□□□□ -0.67
GNE-206ENST00000543356 TFAP4Q01664 338 aa10.86□□□□□ -0.67
GNE-206ENST00000543356 SLC4A8Q2Y0W8 1093 aa10.86□□□□□ -0.67
GNE-206ENST00000543356 RSBN1LQ6PCB5 846 aaPredicted RBP10.86□□□□□ -0.67
GNE-206ENST00000543356 TTC6Q86TZ1 520 aa10.86□□□□□ -0.67
GNE-206ENST00000543356 DGKHQ86XP1 1220 aa10.86□□□□□ -0.67
GNE-206ENST00000543356 CCDC144CPQ8IYA2 1237 aa10.86□□□□□ -0.67
GNE-206ENST00000543356 FANCBQ8NB91 859 aa10.86□□□□□ -0.67
GNE-206ENST00000543356 OSBPL5Q9H0X9 879 aaPredicted RBP10.86□□□□□ -0.67
GNE-206ENST00000543356 DDX4Q9NQI0 724 aaKnown RBP10.86□□□□□ -0.67
GNE-206ENST00000543356 RBM28Q9NW13 759 aaKnown RBP10.86□□□□□ -0.67
GNE-206ENST00000543356 CNPY2Q9Y2B0 182 aa10.86□□□□□ -0.67
GNE-206ENST00000543356 PLIN4Q96Q06 1357 aa10.86□□□□□ -0.67
GNE-206ENST00000543356 COL2A1P02458 1487 aaPredicted RBP10.86□□□□□ -0.67
GNE-206ENST00000543356 SIPA1L1O43166 1804 aa10.86□□□□□ -0.67
GNE-206ENST00000543356 MBD3O95983 291 aa10.86□□□□□ -0.67
GNE-206ENST00000543356 VIL1P09327 827 aaKnown RBP10.86□□□□□ -0.67
GNE-206ENST00000543356 DNM1Q05193 864 aaKnown RBP10.86□□□□□ -0.67
GNE-206ENST00000543356 PICALMQ13492 652 aa10.86□□□□□ -0.67
GNE-206ENST00000543356 FERMT3Q86UX7 667 aa10.86□□□□□ -0.67
GNE-206ENST00000543356 ZNF444Q8N0Y2 327 aaPredicted RBP10.86□□□□□ -0.67
GNE-206ENST00000543356 C8orf76Q96K31 380 aa10.86□□□□□ -0.67
GNE-206ENST00000543356 IDI2Q9BXS1 227 aa10.86□□□□□ -0.67
GNE-206ENST00000543356 TCHHQ07283 1943 aa10.86□□□□□ -0.67
GNE-206ENST00000543356 KRT85P78386 507 aa10.85□□□□□ -0.67
GNE-206ENST00000543356 GABPAQ06546 454 aa10.85□□□□□ -0.67
GNE-206ENST00000543356 TROAPQ12815 778 aa10.85□□□□□ -0.67
GNE-206ENST00000543356 FOXD4L6Q3SYB3 417 aaPredicted RBP10.85□□□□□ -0.67
GNE-206ENST00000543356 RCSD1Q6JBY9 416 aa10.85□□□□□ -0.67
GNE-206ENST00000543356 FOXD4L3Q6VB84 417 aaPredicted RBP10.85□□□□□ -0.67
GNE-206ENST00000543356 NIM1KQ8IY84 436 aa10.85□□□□□ -0.67
GNE-206ENST00000543356 WASF1Q92558 559 aa10.85□□□□□ -0.67
GNE-206ENST00000543356 SWAP70Q9UH65 585 aa10.85□□□□□ -0.67
GNE-206ENST00000543356 ZNRF3Q9ULT6 936 aa10.85□□□□□ -0.67
GNE-206ENST00000543356 DDX49Q9Y6V7 483 aaKnown RBP10.85□□□□□ -0.67
GNE-206ENST00000543356 LTBP3Q9NS15 1303 aa10.85□□□□□ -0.67
GNE-206ENST00000543356 GREB1LQ9C091 1923 aaPredicted RBP10.85□□□□□ -0.67
GNE-206ENST00000543356 NMT2O60551 498 aa10.85□□□□□ -0.67
GNE-206ENST00000543356 TSPY3P0CV98 308 aa10.85□□□□□ -0.67
GNE-206ENST00000543356 TSPY8P0CW00 308 aa10.85□□□□□ -0.67
GNE-206ENST00000543356 SSRP1Q08945 709 aaKnown RBP10.85□□□□□ -0.67
GNE-206ENST00000543356 NBPF11Q86T75 865 aa10.85□□□□□ -0.67
GNE-206ENST00000543356 USP48Q86UV5 1035 aa10.85□□□□□ -0.67
GNE-206ENST00000543356 SLC44A5Q8NCS7 719 aa10.85□□□□□ -0.67
GNE-206ENST00000543356 FBXO18Q8NFZ0 1043 aa10.85□□□□□ -0.67
GNE-206ENST00000543356 MAP3K14Q99558 947 aa10.85□□□□□ -0.67
GNE-206ENST00000543356 EHD4Q9H223 541 aa10.85□□□□□ -0.67
GNE-206ENST00000543356 TAOK3Q9H2K8 898 aa10.85□□□□□ -0.67
GNE-206ENST00000543356 IL17RBQ9NRM6 502 aa10.85□□□□□ -0.67
GNE-206ENST00000543356 ELP1O95163 1332 aa10.84□□□□□ -0.67
GNE-206ENST00000543356 TRIM22Q8IYM9 498 aa10.84□□□□□ -0.67
GNE-206ENST00000543356 NEDD1Q8NHV4 660 aa10.84□□□□□ -0.67
GNE-206ENST00000543356 NUP133Q8WUM0 1156 aa10.84□□□□□ -0.67
GNE-206ENST00000543356 PHKBQ93100 1093 aa10.84□□□□□ -0.67
GNE-206ENST00000543356 GMLQ99445 158 aa10.84□□□□□ -0.67
GNE-206ENST00000543356 ALG1Q9BT22 464 aa10.84□□□□□ -0.67
GNE-206ENST00000543356 PSDA5PKW4 1024 aaPredicted RBP10.84□□□□□ -0.67
GNE-206ENST00000543356 PSMD14O00487 310 aa10.84□□□□□ -0.67
GNE-206ENST00000543356 PPFIA3O75145 1194 aa10.84□□□□□ -0.67
GNE-206ENST00000543356 HLA-DOAP06340 250 aa10.84□□□□□ -0.67
GNE-206ENST00000543356 ATL3Q6DD88 541 aa10.84□□□□□ -0.67
GNE-206ENST00000543356 CRACR2BQ8N4Y2 399 aaPredicted RBP10.84□□□□□ -0.67
GNE-206ENST00000543356 GPT2Q8TD30 523 aa10.84□□□□□ -0.67
GNE-206ENST00000543356 SLC26A6Q9BXS9 759 aa10.84□□□□□ -0.67
GNE-206ENST00000543356 RNF26Q9BY78 433 aaPredicted RBP10.84□□□□□ -0.67
GNE-206ENST00000543356 FIBPO43427 364 aa10.83□□□□□ -0.68
GNE-206ENST00000543356 DEXIO95424 95 aa10.83□□□□□ -0.68
GNE-206ENST00000543356 NCLP19338 710 aaKnown RBP10.83□□□□□ -0.68
GNE-206ENST00000543356 NOVP48745 357 aa10.83□□□□□ -0.68
GNE-206ENST00000543356 RBM5P52756 815 aaKnown RBP eCLIP10.83□□□□□ -0.68
GNE-206ENST00000543356 FOSBP53539 338 aa10.83□□□□□ -0.68
GNE-206ENST00000543356 NFIAQ12857 509 aa10.83□□□□□ -0.68
GNE-206ENST00000543356 CFAP100Q494V2 611 aa10.83□□□□□ -0.68
GNE-206ENST00000543356 AGBL3Q8NEM8 1001 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms