RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 SART3Q15020 963 aaKnown RBP14.37□□□□□ -0.11
RNF4-222ENST00000541204 ERCC6LQ2NKX8 1250 aa14.37□□□□□ -0.11
RNF4-222ENST00000541204 SGMS1Q86VZ5 419 aa14.37□□□□□ -0.11
RNF4-222ENST00000541204 L2HGDHQ9H9P8 463 aa14.37□□□□□ -0.11
RNF4-222ENST00000541204 TUBE1Q9UJT0 475 aa14.37□□□□□ -0.11
RNF4-222ENST00000541204 KCNJ14Q9UNX9 436 aa14.37□□□□□ -0.11
RNF4-222ENST00000541204 hCG_1642624A0A1W2PR95 340 aa14.37□□□□□ -0.11
RNF4-222ENST00000541204 PRDX5P30044 214 aa14.37□□□□□ -0.11
RNF4-222ENST00000541204 UBASH3AP57075 661 aa14.37□□□□□ -0.11
RNF4-222ENST00000541204 SSRP1Q08945 709 aaKnown RBP14.37□□□□□ -0.11
RNF4-222ENST00000541204 FAM196AQ6ZSG2 479 aa14.37□□□□□ -0.11
RNF4-222ENST00000541204 ZNF771Q7L3S4 317 aaPredicted RBP14.37□□□□□ -0.11
RNF4-222ENST00000541204 HOMER1Q86YM7 354 aa14.37□□□□□ -0.11
RNF4-222ENST00000541204 TIGD1Q96MW7 591 aa14.37□□□□□ -0.11
RNF4-222ENST00000541204 GPR101Q96P66 508 aaPredicted RBP14.37□□□□□ -0.11
RNF4-222ENST00000541204 RIOK1Q9BRS2 568 aaKnown RBP14.37□□□□□ -0.11
RNF4-222ENST00000541204 HPSEQ9Y251 543 aa14.37□□□□□ -0.11
RNF4-222ENST00000541204 RREB1Q92766 1687 aa14.36□□□□□ -0.11
RNF4-222ENST00000541204 NRDCO43847 1150 aa14.36□□□□□ -0.11
RNF4-222ENST00000541204 SERPINC1P01008 464 aa14.36□□□□□ -0.11
RNF4-222ENST00000541204 HIBADHP31937 336 aaKnown RBP14.36□□□□□ -0.11
RNF4-222ENST00000541204 LIFRP42702 1097 aa14.36□□□□□ -0.11
RNF4-222ENST00000541204 PTPAQ15257 358 aa14.36□□□□□ -0.11
RNF4-222ENST00000541204 SLC10A5Q5PT55 438 aa14.36□□□□□ -0.11
RNF4-222ENST00000541204 KRT222Q8N1A0 295 aa14.36□□□□□ -0.11
RNF4-222ENST00000541204 ANKIB1Q9P2G1 1089 aa14.36□□□□□ -0.11
RNF4-222ENST00000541204 ARAP2Q8WZ64 1704 aa14.36□□□□□ -0.11
RNF4-222ENST00000541204 GOLGB1Q14789 3259 aaKnown RBP14.36□□□□□ -0.11
RNF4-222ENST00000541204 PPP6R2O75170 966 aa14.36□□□□□ -0.11
RNF4-222ENST00000541204 MECOMQ03112 1051 aa14.36□□□□□ -0.11
RNF4-222ENST00000541204 GOLGA8FQ08AF8 430 aa14.36□□□□□ -0.11
RNF4-222ENST00000541204 GOLGA8DPQ0D2H9 430 aa14.36□□□□□ -0.11
RNF4-222ENST00000541204 RTN1Q16799 776 aa14.36□□□□□ -0.11
RNF4-222ENST00000541204 CFAP100Q494V2 611 aa14.36□□□□□ -0.11
RNF4-222ENST00000541204 COL5A3P25940 1745 aaPredicted RBP14.35□□□□□ -0.11
RNF4-222ENST00000541204 ATP2B1P20020 1258 aa14.35□□□□□ -0.11
RNF4-222ENST00000541204 KCNJ6P48051 423 aa14.35□□□□□ -0.11
RNF4-222ENST00000541204 MYL5Q02045 173 aa14.35□□□□□ -0.11
RNF4-222ENST00000541204 GABPB1Q06547 395 aaPredicted RBP14.35□□□□□ -0.11
RNF4-222ENST00000541204 CCDC93Q567U6 631 aa14.35□□□□□ -0.11
RNF4-222ENST00000541204 MAP3K14Q99558 947 aa14.35□□□□□ -0.11
RNF4-222ENST00000541204 ZNF446Q9NWS9 450 aa14.35□□□□□ -0.11
RNF4-222ENST00000541204 TNKSO95271 1327 aa14.35□□□□□ -0.11
RNF4-222ENST00000541204 USP17L12C9JPN9 530 aa14.35□□□□□ -0.11
RNF4-222ENST00000541204 USP17L21D6R901 530 aa14.35□□□□□ -0.11
RNF4-222ENST00000541204 LONRF3Q496Y0 759 aa14.35□□□□□ -0.11
RNF4-222ENST00000541204 TRAPPC3LQ5T215 181 aa14.35□□□□□ -0.11
RNF4-222ENST00000541204 RC3H1Q5TC82 1133 aaKnown RBP14.35□□□□□ -0.11
RNF4-222ENST00000541204 JMYQ8N9B5 988 aa14.35□□□□□ -0.11
RNF4-222ENST00000541204 RNF41Q9H4P4 317 aaPredicted RBP14.35□□□□□ -0.11
RNF4-222ENST00000541204 BTBD18B2RXH4 712 aa14.34□□□□□ -0.11
RNF4-222ENST00000541204 RESP18Q5W5W9 173 aa14.34□□□□□ -0.11
RNF4-222ENST00000541204 FBXO33Q7Z6M2 555 aa14.34□□□□□ -0.11
RNF4-222ENST00000541204 METTL16Q86W50 562 aaKnown RBP14.34□□□□□ -0.11
RNF4-222ENST00000541204 ZNF654Q8IZM8 581 aa14.34□□□□□ -0.11
RNF4-222ENST00000541204 DNAI1Q9UI46 699 aa14.34□□□□□ -0.11
RNF4-222ENST00000541204 TMEM232C9JQI7 657 aa14.34□□□□□ -0.11
RNF4-222ENST00000541204 SLFN14P0C7P3 912 aa14.34□□□□□ -0.11
RNF4-222ENST00000541204 SPECC1Q5M775 1068 aa14.34□□□□□ -0.11
RNF4-222ENST00000541204 FOXP4Q8IVH2 680 aaPredicted RBP14.34□□□□□ -0.11
RNF4-222ENST00000541204 ESR2Q92731 530 aa14.34□□□□□ -0.11
RNF4-222ENST00000541204 NSUN4Q96CB9 384 aaKnown RBP14.34□□□□□ -0.11
RNF4-222ENST00000541204 FANCLQ9NW38 375 aa14.34□□□□□ -0.11
RNF4-222ENST00000541204 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.34□□□□□ -0.11
RNF4-222ENST00000541204 TM4SF1P30408 202 aa14.34□□□□□ -0.11
RNF4-222ENST00000541204 DHX8Q14562 1220 aaKnown RBP14.34□□□□□ -0.11
RNF4-222ENST00000541204 NFIXQ14938 502 aa14.34□□□□□ -0.11
RNF4-222ENST00000541204 HSP90AA4PQ58FG1 418 aa14.34□□□□□ -0.11
RNF4-222ENST00000541204 GJD4Q96KN9 370 aaPredicted RBP14.34□□□□□ -0.11
RNF4-222ENST00000541204 LRRC4BQ9NT99 713 aa14.34□□□□□ -0.11
RNF4-222ENST00000541204 NMT2O60551 498 aa14.33□□□□□ -0.12
RNF4-222ENST00000541204 FMNL1O95466 1100 aaPredicted RBP14.33□□□□□ -0.12
RNF4-222ENST00000541204 CYP2D6P10635 497 aa14.33□□□□□ -0.12
RNF4-222ENST00000541204 ETF1P62495 437 aaKnown RBP14.33□□□□□ -0.12
RNF4-222ENST00000541204 TRIM22Q8IYM9 498 aa14.33□□□□□ -0.12
RNF4-222ENST00000541204 FANCBQ8NB91 859 aa14.33□□□□□ -0.12
RNF4-222ENST00000541204 CNNM3Q8NE01 707 aa14.33□□□□□ -0.12
RNF4-222ENST00000541204 FAM53CQ9NYF3 392 aa14.33□□□□□ -0.12
RNF4-222ENST00000541204 CICQ96RK0 1608 aaPredicted RBP14.33□□□□□ -0.12
RNF4-222ENST00000541204 FOXN1O15353 648 aa14.33□□□□□ -0.12
RNF4-222ENST00000541204 CBFA2T2O43439 604 aa14.33□□□□□ -0.12
RNF4-222ENST00000541204 FAM47AQ5JRC9 791 aa14.33□□□□□ -0.12
RNF4-222ENST00000541204 CTR9Q6PD62 1173 aa14.33□□□□□ -0.12
RNF4-222ENST00000541204 OLFM4Q6UX06 510 aa14.33□□□□□ -0.12
RNF4-222ENST00000541204 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.33□□□□□ -0.12
RNF4-222ENST00000541204 ST7Q9NRC1 585 aa14.33□□□□□ -0.12
RNF4-222ENST00000541204 KCNH3Q9ULD8 1083 aa14.33□□□□□ -0.12
RNF4-222ENST00000541204 PCDHA5Q9Y5H7 936 aa14.33□□□□□ -0.12
RNF4-222ENST00000541204 BCORQ6W2J9 1755 aa14.32□□□□□ -0.12
RNF4-222ENST00000541204 DOCK2Q92608 1830 aa14.32□□□□□ -0.12
RNF4-222ENST00000541204 H2AFXP16104 143 aaPredicted RBP14.32□□□□□ -0.12
RNF4-222ENST00000541204 IFNAR1P17181 557 aa14.32□□□□□ -0.12
RNF4-222ENST00000541204 NR5A1Q13285 461 aa14.32□□□□□ -0.12
RNF4-222ENST00000541204 KRBA2Q6ZNG9 492 aa14.32□□□□□ -0.12
RNF4-222ENST00000541204 VSTM4Q8IW00 320 aa14.32□□□□□ -0.12
RNF4-222ENST00000541204 ENAHQ8N8S7 591 aaPredicted RBP14.32□□□□□ -0.12
RNF4-222ENST00000541204 ANKRD2Q9GZV1 360 aa14.32□□□□□ -0.12
RNF4-222ENST00000541204 FAM237AA0A1B0GTK4 181 aa14.32□□□□□ -0.12
RNF4-222ENST00000541204 FANCGO15287 622 aa14.32□□□□□ -0.12
RNF4-222ENST00000541204 TOP1P11387 765 aaKnown RBP14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms