RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 VAC14Q08AM6 782 aa8.95□□□□□ -0.98
CD44-228ENST00000528455 KIAA2012Q0VF49 1180 aa8.95□□□□□ -0.98
CD44-228ENST00000528455 LRRFIP1Q32MZ4 808 aaKnown RBP8.95□□□□□ -0.98
CD44-228ENST00000528455 CNTROBQ8N137 903 aa8.95□□□□□ -0.98
CD44-228ENST00000528455 WDR66Q8TBY9 1149 aa8.95□□□□□ -0.98
CD44-228ENST00000528455 ADAM32Q8TC27 787 aa8.95□□□□□ -0.98
CD44-228ENST00000528455 C1QTNF2Q9BXJ5 285 aa8.95□□□□□ -0.98
CD44-228ENST00000528455 PKD2L1Q9P0L9 805 aa8.95□□□□□ -0.98
CD44-228ENST00000528455 HMG20BQ9P0W2 317 aa8.95□□□□□ -0.98
CD44-228ENST00000528455 SNED1Q8TER0 1413 aa8.95□□□□□ -0.98
CD44-228ENST00000528455 POTECB2RU33 542 aa8.94□□□□□ -0.98
CD44-228ENST00000528455 HIP1O00291 1037 aa8.94□□□□□ -0.98
CD44-228ENST00000528455 CYP2E1P05181 493 aaPredicted RBP8.94□□□□□ -0.98
CD44-228ENST00000528455 GSPT1P15170 499 aaKnown RBP8.94□□□□□ -0.98
CD44-228ENST00000528455 VARSP26640 1264 aaKnown RBP8.94□□□□□ -0.98
CD44-228ENST00000528455 ZBTB33Q86T24 672 aa8.94□□□□□ -0.98
CD44-228ENST00000528455 ZGPATQ8N5A5 531 aaKnown RBP8.94□□□□□ -0.98
CD44-228ENST00000528455 KBTBD3Q8NAB2 608 aa8.94□□□□□ -0.98
CD44-228ENST00000528455 RILPL2Q969X0 211 aa8.94□□□□□ -0.98
CD44-228ENST00000528455 PAG1Q9NWQ8 432 aa8.94□□□□□ -0.98
CD44-228ENST00000528455 FAM205AQ6ZU69 1335 aa8.94□□□□□ -0.98
CD44-228ENST00000528455 POM121CA8CG34 1229 aa8.93□□□□□ -0.98
CD44-228ENST00000528455 FZD9O00144 591 aa8.93□□□□□ -0.98
CD44-228ENST00000528455 SIAH2O43255 324 aa8.93□□□□□ -0.98
CD44-228ENST00000528455 ZFYP08048 801 aaPredicted RBP8.93□□□□□ -0.98
CD44-228ENST00000528455 KLRK1P26718 216 aa8.93□□□□□ -0.98
CD44-228ENST00000528455 ZAP70P43403 619 aa8.93□□□□□ -0.98
CD44-228ENST00000528455 FKBP1AP62942 108 aaKnown RBP8.93□□□□□ -0.98
CD44-228ENST00000528455 RASGRF1Q13972 1273 aa8.93□□□□□ -0.98
CD44-228ENST00000528455 SCARF1Q14162 830 aa8.93□□□□□ -0.98
CD44-228ENST00000528455 STRIP1Q5VSL9 837 aa8.93□□□□□ -0.98
CD44-228ENST00000528455 TSHZ3Q63HK5 1081 aa8.93□□□□□ -0.98
CD44-228ENST00000528455 SPTY2D1Q68D10 685 aaPredicted RBP8.93□□□□□ -0.98
CD44-228ENST00000528455 TTLL5Q6EMB2 1281 aa8.93□□□□□ -0.98
CD44-228ENST00000528455 ZSCAN25Q6NSZ9 544 aa8.93□□□□□ -0.98
CD44-228ENST00000528455 LARGE2Q8N3Y3 721 aa8.93□□□□□ -0.98
CD44-228ENST00000528455 EHBP1Q8NDI1 1231 aa8.93□□□□□ -0.98
CD44-228ENST00000528455 TBC1D22AQ8WUA7 517 aa8.93□□□□□ -0.98
CD44-228ENST00000528455 MRGPRX2Q96LB1 330 aa8.93□□□□□ -0.98
CD44-228ENST00000528455 MRIQ9BWK5 157 aa8.93□□□□□ -0.98
CD44-228ENST00000528455 SUGT1Q9Y2Z0 365 aa8.93□□□□□ -0.98
CD44-228ENST00000528455 SALL1Q9NSC2 1324 aa8.93□□□□□ -0.98
CD44-228ENST00000528455 WDR90Q96KV7 1748 aa8.93□□□□□ -0.98
CD44-228ENST00000528455 AK9Q5TCS8 1911 aa8.92□□□□□ -0.98
CD44-228ENST00000528455 GOLIM4O00461 696 aa8.92□□□□□ -0.98
CD44-228ENST00000528455 PPIP5K2O43314 1243 aa8.92□□□□□ -0.98
CD44-228ENST00000528455 GDF9O60383 454 aa8.92□□□□□ -0.98
CD44-228ENST00000528455 MAP4K4O95819 1239 aaPredicted RBP8.92□□□□□ -0.98
CD44-228ENST00000528455 MMP14P50281 582 aa8.92□□□□□ -0.98
CD44-228ENST00000528455 EIF6P56537 245 aaKnown RBP8.92□□□□□ -0.98
CD44-228ENST00000528455 MAP3K12Q12852 859 aa8.92□□□□□ -0.98
CD44-228ENST00000528455 FOXC1Q12948 553 aa8.92□□□□□ -0.98
CD44-228ENST00000528455 CASC1Q6TDU7 716 aa8.92□□□□□ -0.98
CD44-228ENST00000528455 TRIM67Q6ZTA4 783 aa8.92□□□□□ -0.98
CD44-228ENST00000528455 SLC51AQ86UW1 340 aa8.92□□□□□ -0.98
CD44-228ENST00000528455 GPC2Q8N158 579 aa8.92□□□□□ -0.98
CD44-228ENST00000528455 DNAJC2Q99543 621 aaKnown RBP8.92□□□□□ -0.98
CD44-228ENST00000528455 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.92□□□□□ -0.98
CD44-228ENST00000528455 ZNRF3Q9ULT6 936 aa8.92□□□□□ -0.98
CD44-228ENST00000528455 ZNF541Q9H0D2 1346 aa8.91□□□□□ -0.98
CD44-228ENST00000528455 USP17L3A6NCW0 530 aa8.91□□□□□ -0.98
CD44-228ENST00000528455 USP17L4A6NCW7 530 aa8.91□□□□□ -0.98
CD44-228ENST00000528455 CDC45O75419 566 aa8.91□□□□□ -0.98
CD44-228ENST00000528455 CHMLP26374 656 aa8.91□□□□□ -0.98
CD44-228ENST00000528455 GTF2IP78347 998 aa8.91□□□□□ -0.98
CD44-228ENST00000528455 UBE3CQ15386 1083 aa8.91□□□□□ -0.98
CD44-228ENST00000528455 AOC3Q16853 763 aa8.91□□□□□ -0.98
CD44-228ENST00000528455 USP17L1Q7RTZ2 530 aa8.91□□□□□ -0.98
CD44-228ENST00000528455 NIM1KQ8IY84 436 aa8.91□□□□□ -0.98
CD44-228ENST00000528455 TRMT44Q8IYL2 757 aaKnown RBP8.91□□□□□ -0.98
CD44-228ENST00000528455 FAM174AQ8TBP5 190 aa8.91□□□□□ -0.98
CD44-228ENST00000528455 RUFY2Q8WXA3 655 aa8.91□□□□□ -0.98
CD44-228ENST00000528455 GPR101Q96P66 508 aaPredicted RBP8.91□□□□□ -0.98
CD44-228ENST00000528455 ANTXR1Q9H6X2 564 aa8.91□□□□□ -0.98
CD44-228ENST00000528455 LRP2BPQ9P2M1 347 aa8.91□□□□□ -0.98
CD44-228ENST00000528455 HACL1Q9UJ83 578 aa8.91□□□□□ -0.98
CD44-228ENST00000528455 IQSEC3Q9UPP2 1182 aaPredicted RBP8.91□□□□□ -0.98
CD44-228ENST00000528455 MYH13Q9UKX3 1938 aa8.91□□□□□ -0.98
CD44-228ENST00000528455 DUOX1Q9NRD9 1551 aa8.9□□□□□ -0.98
CD44-228ENST00000528455 SCN4AP35499 1836 aa8.9□□□□□ -0.98
CD44-228ENST00000528455 RNF113AO15541 343 aaKnown RBP8.9□□□□□ -0.98
CD44-228ENST00000528455 EPB41L2O43491 1005 aaKnown RBP8.9□□□□□ -0.98
CD44-228ENST00000528455 ECE2O60344 883 aa8.9□□□□□ -0.98
CD44-228ENST00000528455 LDHCP07864 332 aa8.9□□□□□ -0.98
CD44-228ENST00000528455 VIL1P09327 827 aaKnown RBP8.9□□□□□ -0.98
CD44-228ENST00000528455 SLC9C2Q5TAH2 1124 aa8.9□□□□□ -0.98
CD44-228ENST00000528455 PI16Q6UXB8 463 aa8.9□□□□□ -0.98
CD44-228ENST00000528455 TBC1D9Q6ZT07 1266 aa8.9□□□□□ -0.98
CD44-228ENST00000528455 PNMA8AQ86V59 439 aaPredicted RBP8.9□□□□□ -0.98
CD44-228ENST00000528455 DNAJC5GQ8N7S2 189 aa8.9□□□□□ -0.98
CD44-228ENST00000528455 EDC3Q96F86 508 aaKnown RBP8.9□□□□□ -0.98
CD44-228ENST00000528455 FSD1Q9BTV5 496 aa8.9□□□□□ -0.98
CD44-228ENST00000528455 BACH2Q9BYV9 841 aa8.9□□□□□ -0.98
CD44-228ENST00000528455 TAF1DQ9H5J8 278 aaPredicted RBP8.9□□□□□ -0.98
CD44-228ENST00000528455 HELLSQ9NRZ9 838 aa8.9□□□□□ -0.98
CD44-228ENST00000528455 ABCF2Q9UG63 623 aa8.9□□□□□ -0.98
CD44-228ENST00000528455 GJA3Q9Y6H8 435 aa8.9□□□□□ -0.98
CD44-228ENST00000528455 MYO5AQ9Y4I1 1855 aaKnown RBP8.89□□□□□ -0.99
CD44-228ENST00000528455 RFX7Q2KHR2 1363 aa8.89□□□□□ -0.99
CD44-228ENST00000528455 LDHBP07195 334 aaKnown RBP8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms