RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 IL2RBP14784 551 aa17.43■□□□□ 0.38
UPF1-204ENST00000596842 CCT6AP40227 531 aaKnown RBP17.43■□□□□ 0.38
UPF1-204ENST00000596842 PPP2R3AQ06190 1150 aa17.43■□□□□ 0.38
UPF1-204ENST00000596842 SART3Q15020 963 aaKnown RBP17.43■□□□□ 0.38
UPF1-204ENST00000596842 ZBTB38Q8NAP3 1195 aaPredicted RBP17.43■□□□□ 0.38
UPF1-204ENST00000596842 SDR42E1Q8WUS8 393 aa17.43■□□□□ 0.38
UPF1-204ENST00000596842 UBAC1Q9BSL1 405 aa17.43■□□□□ 0.38
UPF1-204ENST00000596842 GTF2A1P52655 376 aaPredicted RBP17.43■□□□□ 0.38
UPF1-204ENST00000596842 A0A0U1RQJ8 604 aa17.43■□□□□ 0.38
UPF1-204ENST00000596842 STARD3NLO95772 234 aa17.43■□□□□ 0.38
UPF1-204ENST00000596842 PPFIBP1Q86W92 1011 aa17.43■□□□□ 0.38
UPF1-204ENST00000596842 REXO1L1PQ8IX06 675 aa17.43■□□□□ 0.38
UPF1-204ENST00000596842 ATRIPQ8WXE1 791 aa17.43■□□□□ 0.38
UPF1-204ENST00000596842 ISCA1Q9BUE6 129 aa17.43■□□□□ 0.38
UPF1-204ENST00000596842 INTS13Q9NVM9 706 aa17.43■□□□□ 0.38
UPF1-204ENST00000596842 TUBE1Q9UJT0 475 aa17.43■□□□□ 0.38
UPF1-204ENST00000596842 ARHGAP6O43182 974 aa17.42■□□□□ 0.38
UPF1-204ENST00000596842 TEX33O43247 280 aa17.42■□□□□ 0.38
UPF1-204ENST00000596842 PPP6R2O75170 966 aa17.42■□□□□ 0.38
UPF1-204ENST00000596842 TFRCP02786 760 aaKnown RBP17.42■□□□□ 0.38
UPF1-204ENST00000596842 MAP3K12Q12852 859 aa17.42■□□□□ 0.38
UPF1-204ENST00000596842 TRIM65Q6PJ69 517 aa17.42■□□□□ 0.38
UPF1-204ENST00000596842 FHOD1Q9Y613 1164 aa17.42■□□□□ 0.38
UPF1-204ENST00000596842 LAMA4Q16363 1823 aa17.42■□□□□ 0.38
UPF1-204ENST00000596842 VWA3AA6NCI4 1184 aa17.42■□□□□ 0.38
UPF1-204ENST00000596842 MCM6Q14566 821 aa17.42■□□□□ 0.38
UPF1-204ENST00000596842 SPECC1LQ69YQ0 1117 aa17.42■□□□□ 0.38
UPF1-204ENST00000596842 IGDCC4Q8TDY8 1250 aa17.42■□□□□ 0.38
UPF1-204ENST00000596842 EPSTI1Q96J88 318 aa17.42■□□□□ 0.38
UPF1-204ENST00000596842 MRC1P22897 1456 aa17.42■□□□□ 0.38
UPF1-204ENST00000596842 PCCAP05165 728 aaPredicted RBP17.42■□□□□ 0.38
UPF1-204ENST00000596842 TTF1Q15361 905 aaPredicted RBP17.42■□□□□ 0.38
UPF1-204ENST00000596842 MAP3K14Q99558 947 aa17.42■□□□□ 0.38
UPF1-204ENST00000596842 CSRNP2Q9H175 543 aa17.42■□□□□ 0.38
UPF1-204ENST00000596842 RIPOR2Q9Y4F9 1068 aa17.42■□□□□ 0.38
UPF1-204ENST00000596842 TMEM94Q12767 1356 aa17.41■□□□□ 0.38
UPF1-204ENST00000596842 PDE8BO95263 885 aa17.41■□□□□ 0.38
UPF1-204ENST00000596842 IBSPP21815 317 aaPredicted RBP17.41■□□□□ 0.38
UPF1-204ENST00000596842 STRBPQ96SI9 672 aaKnown RBP17.41■□□□□ 0.38
UPF1-204ENST00000596842 BCAMP50895 628 aa17.41■□□□□ 0.38
UPF1-204ENST00000596842 CTSWP56202 376 aa17.41■□□□□ 0.38
UPF1-204ENST00000596842 TMEM87BQ96K49 555 aa17.41■□□□□ 0.38
UPF1-204ENST00000596842 EPB41L4AQ9HCS5 686 aaPredicted RBP17.41■□□□□ 0.38
UPF1-204ENST00000596842 SEC31BQ9NQW1 1179 aa17.41■□□□□ 0.38
UPF1-204ENST00000596842 HPSEQ9Y251 543 aa17.41■□□□□ 0.38
UPF1-204ENST00000596842 PARP3Q9Y6F1 533 aa17.41■□□□□ 0.38
UPF1-204ENST00000596842 H2AFXP16104 143 aaPredicted RBP17.41■□□□□ 0.38
UPF1-204ENST00000596842 ZNF174Q15697 407 aa17.41■□□□□ 0.38
UPF1-204ENST00000596842 RASSF8Q8NHQ8 419 aa17.41■□□□□ 0.38
UPF1-204ENST00000596842 BLZF1Q9H2G9 400 aa17.41■□□□□ 0.38
UPF1-204ENST00000596842 FAM217BQ9NTX9 383 aaPredicted RBP17.41■□□□□ 0.38
UPF1-204ENST00000596842 RSPH14Q9UHP6 348 aa17.41■□□□□ 0.38
UPF1-204ENST00000596842 LCORLQ8N3X6 602 aa17.4■□□□□ 0.38
UPF1-204ENST00000596842 SPATA5Q8NB90 893 aa17.4■□□□□ 0.38
UPF1-204ENST00000596842 EEF2KMTQ96G04 330 aa17.4■□□□□ 0.38
UPF1-204ENST00000596842 ATG3Q9NT62 314 aa17.4■□□□□ 0.38
UPF1-204ENST00000596842 CPDO75976 1380 aa17.4■□□□□ 0.38
UPF1-204ENST00000596842 PLA2G4AP47712 749 aa17.4■□□□□ 0.38
UPF1-204ENST00000596842 TOB1P50616 345 aaPredicted RBP17.4■□□□□ 0.38
UPF1-204ENST00000596842 KIF4BQ2VIQ3 1234 aa17.4■□□□□ 0.38
UPF1-204ENST00000596842 RAI14Q9P0K7 980 aa17.4■□□□□ 0.38
UPF1-204ENST00000596842 CYP2D7A0A087X1C5 515 aa17.4■□□□□ 0.38
UPF1-204ENST00000596842 NTRK3Q16288 839 aa17.4■□□□□ 0.38
UPF1-204ENST00000596842 CCDC93Q567U6 631 aa17.4■□□□□ 0.38
UPF1-204ENST00000596842 NLRP10Q86W26 655 aa17.4■□□□□ 0.38
UPF1-204ENST00000596842 RHOXF2BP0C7M4 288 aa17.39■□□□□ 0.37
UPF1-204ENST00000596842 RASGRF1Q13972 1273 aa17.39■□□□□ 0.37
UPF1-204ENST00000596842 RHOXF2Q9BQY4 288 aa17.39■□□□□ 0.37
UPF1-204ENST00000596842 NACAP1Q9BZK3 213 aa17.39■□□□□ 0.37
UPF1-204ENST00000596842 ZBTB1Q9Y2K1 713 aa17.39■□□□□ 0.37
UPF1-204ENST00000596842 ERVV-2B6SEH9 535 aa17.39■□□□□ 0.37
UPF1-204ENST00000596842 TADA3O75528 432 aa17.39■□□□□ 0.37
UPF1-204ENST00000596842 OAS2P29728 719 aaKnown RBP17.39■□□□□ 0.37
UPF1-204ENST00000596842 AKNAD1Q5T1N1 836 aa17.39■□□□□ 0.37
UPF1-204ENST00000596842 IGSF22Q8N9C0 903 aa17.39■□□□□ 0.37
UPF1-204ENST00000596842 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.39■□□□□ 0.37
UPF1-204ENST00000596842 ZNF569Q5MCW4 686 aa17.39■□□□□ 0.37
UPF1-204ENST00000596842 PIGBQ92521 554 aa17.39■□□□□ 0.37
UPF1-204ENST00000596842 PHLPP2Q6ZVD8 1323 aa17.38■□□□□ 0.37
UPF1-204ENST00000596842 MMP1P03956 469 aa17.38■□□□□ 0.37
UPF1-204ENST00000596842 HSPA2P54652 639 aa17.38■□□□□ 0.37
UPF1-204ENST00000596842 MRPL44Q9H9J2 332 aaKnown RBP17.38■□□□□ 0.37
UPF1-204ENST00000596842 ARFGAP3Q9NP61 516 aa17.38■□□□□ 0.37
UPF1-204ENST00000596842 PHACTR2O75167 634 aa17.38■□□□□ 0.37
UPF1-204ENST00000596842 CDC25AP30304 524 aa17.38■□□□□ 0.37
UPF1-204ENST00000596842 ST5P78524 1137 aa17.38■□□□□ 0.37
UPF1-204ENST00000596842 TC2NQ8N9U0 490 aa17.38■□□□□ 0.37
UPF1-204ENST00000596842 VPS16Q9H269 839 aa17.38■□□□□ 0.37
UPF1-204ENST00000596842 NUTM2AQ8IVF1 878 aaPredicted RBP17.38■□□□□ 0.37
UPF1-204ENST00000596842 WASF1Q92558 559 aa17.38■□□□□ 0.37
UPF1-204ENST00000596842 V9GY48 417 aaPredicted RBP17.38■□□□□ 0.37
UPF1-204ENST00000596842 WWC2Q6AWC2 1192 aa17.37■□□□□ 0.37
UPF1-204ENST00000596842 PARD6BQ9BYG5 372 aa17.37■□□□□ 0.37
UPF1-204ENST00000596842 DACH1Q9UI36 760 aa17.37■□□□□ 0.37
UPF1-204ENST00000596842 TACC3Q9Y6A5 838 aa17.37■□□□□ 0.37
UPF1-204ENST00000596842 CYP7A1P22680 504 aa17.37■□□□□ 0.37
UPF1-204ENST00000596842 RBL2Q08999 1139 aa17.37■□□□□ 0.37
UPF1-204ENST00000596842 UBE3CQ15386 1083 aa17.37■□□□□ 0.37
UPF1-204ENST00000596842 GIGYF2Q6Y7W6 1299 aaKnown RBP17.37■□□□□ 0.37
UPF1-204ENST00000596842 JAG2Q9Y219 1238 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms