RNA–Protein interactions for RNA: ENST00000498056.1

CPNE1-227, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 362 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-227ENST00000498056 TRAF5O00463 557 aa16.14■□□□□ 0.17
CPNE1-227ENST00000498056 CTDSPL2Q05D32 466 aa16.14■□□□□ 0.17
CPNE1-227ENST00000498056 NBPF12Q5TAG4 269 aaPredicted RBP16.14■□□□□ 0.17
CPNE1-227ENST00000498056 TEPSINQ96N21 525 aa16.14■□□□□ 0.17
CPNE1-227ENST00000498056 UPF2Q9HAU5 1272 aaKnown RBP16.14■□□□□ 0.17
CPNE1-227ENST00000498056 PTPRFP10586 1907 aa16.13■□□□□ 0.17
CPNE1-227ENST00000498056 ZNF213O14771 459 aa16.13■□□□□ 0.17
CPNE1-227ENST00000498056 MCCP23508 829 aa16.13■□□□□ 0.17
CPNE1-227ENST00000498056 NF2P35240 595 aa16.13■□□□□ 0.17
CPNE1-227ENST00000498056 PLCD1P51178 756 aa16.13■□□□□ 0.17
CPNE1-227ENST00000498056 SBK1Q52WX2 424 aa16.13■□□□□ 0.17
CPNE1-227ENST00000498056 C12orf60Q5U649 245 aa16.13■□□□□ 0.17
CPNE1-227ENST00000498056 TBC1D10CQ8IV04 446 aa16.13■□□□□ 0.17
CPNE1-227ENST00000498056 SERPINB13Q9UIV8 391 aa16.13■□□□□ 0.17
CPNE1-227ENST00000498056 SLC3A2P08195 630 aaKnown RBP16.12■□□□□ 0.17
CPNE1-227ENST00000498056 SLURP2P0DP57 97 aa16.12■□□□□ 0.17
CPNE1-227ENST00000498056 RNF20Q5VTR2 975 aa16.12■□□□□ 0.17
CPNE1-227ENST00000498056 CREB3L3Q68CJ9 461 aa16.12■□□□□ 0.17
CPNE1-227ENST00000498056 SLC44A5Q8NCS7 719 aa16.12■□□□□ 0.17
CPNE1-227ENST00000498056 SMC1BQ8NDV3 1235 aa16.12■□□□□ 0.17
CPNE1-227ENST00000498056 HOOK2Q96ED9 719 aa16.12■□□□□ 0.17
CPNE1-227ENST00000498056 DYNLL2Q96FJ2 89 aa16.12■□□□□ 0.17
CPNE1-227ENST00000498056 BACH2Q9BYV9 841 aa16.12■□□□□ 0.17
CPNE1-227ENST00000498056 EHD4Q9H223 541 aa16.12■□□□□ 0.17
CPNE1-227ENST00000498056 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.12■□□□□ 0.17
CPNE1-227ENST00000498056 TOMM22Q9NS69 142 aa16.12■□□□□ 0.17
CPNE1-227ENST00000498056 PI4KBQ9UBF8 816 aa16.12■□□□□ 0.17
CPNE1-227ENST00000498056 SLC27A2O14975 620 aa16.11■□□□□ 0.17
CPNE1-227ENST00000498056 CYP21A2P08686 494 aa16.11■□□□□ 0.17
CPNE1-227ENST00000498056 FMR1Q06787 632 aaKnown RBP eCLIP16.11■□□□□ 0.17
CPNE1-227ENST00000498056 PRKG1Q13976 671 aa16.11■□□□□ 0.17
CPNE1-227ENST00000498056 SUPT20HL1Q3ZLR7 823 aa16.11■□□□□ 0.17
CPNE1-227ENST00000498056 DCAF15Q66K64 600 aa16.11■□□□□ 0.17
CPNE1-227ENST00000498056 MIGA2Q7L4E1 593 aa16.11■□□□□ 0.17
CPNE1-227ENST00000498056 NBPF3Q9H094 633 aa16.11■□□□□ 0.17
CPNE1-227ENST00000498056 DNAJC18Q9H819 358 aa16.11■□□□□ 0.17
CPNE1-227ENST00000498056 NEDD4P46934 1319 aa16.11■□□□□ 0.17
CPNE1-227ENST00000498056 PRDM1O75626 825 aa16.1■□□□□ 0.17
CPNE1-227ENST00000498056 TOMM70O94826 608 aa16.1■□□□□ 0.17
CPNE1-227ENST00000498056 HSPA4P34932 840 aa16.1■□□□□ 0.17
CPNE1-227ENST00000498056 TTLL12Q14166 644 aaPredicted RBP16.1■□□□□ 0.17
CPNE1-227ENST00000498056 RRP12Q5JTH9 1297 aaKnown RBP16.1■□□□□ 0.17
CPNE1-227ENST00000498056 C16orf86Q6ZW13 317 aa16.1■□□□□ 0.17
CPNE1-227ENST00000498056 RBM46Q8TBY0 533 aaKnown RBP16.1■□□□□ 0.17
CPNE1-227ENST00000498056 USP26Q9BXU7 913 aa16.1■□□□□ 0.17
CPNE1-227ENST00000498056 HERC5Q9UII4 1024 aaKnown RBP16.1■□□□□ 0.17
CPNE1-227ENST00000498056 ANAPC4Q9UJX5 808 aa16.1■□□□□ 0.17
CPNE1-227ENST00000498056 FZD1Q9UP38 647 aa16.1■□□□□ 0.17
CPNE1-227ENST00000498056 TAF6LQ9Y6J9 622 aa16.1■□□□□ 0.17
CPNE1-227ENST00000498056 EPB41L2O43491 1005 aaKnown RBP16.09■□□□□ 0.17
CPNE1-227ENST00000498056 ZKSCAN1P17029 563 aaPredicted RBP16.09■□□□□ 0.17
CPNE1-227ENST00000498056 PDE4BQ07343 736 aa16.09■□□□□ 0.17
CPNE1-227ENST00000498056 STAG1Q8WVM7 1258 aa16.09■□□□□ 0.17
CPNE1-227ENST00000498056 ZNF341Q9BYN7 854 aa16.09■□□□□ 0.17
CPNE1-227ENST00000498056 RNF41Q9H4P4 317 aaPredicted RBP16.09■□□□□ 0.17
CPNE1-227ENST00000498056 MKNK2Q9HBH9 465 aa16.09■□□□□ 0.17
CPNE1-227ENST00000498056 SWAP70Q9UH65 585 aa16.09■□□□□ 0.17
CPNE1-227ENST00000498056 CELF2O95319 508 aaKnown RBP16.08■□□□□ 0.16
CPNE1-227ENST00000498056 GDF11O95390 407 aa16.08■□□□□ 0.16
CPNE1-227ENST00000498056 GABPAQ06546 454 aa16.08■□□□□ 0.16
CPNE1-227ENST00000498056 NECTIN1Q15223 517 aa16.08■□□□□ 0.16
CPNE1-227ENST00000498056 AKNAD1Q5T1N1 836 aa16.08■□□□□ 0.16
CPNE1-227ENST00000498056 MFSD6Q6ZSS7 791 aa16.08■□□□□ 0.16
CPNE1-227ENST00000498056 WRNIP1Q96S55 665 aa16.08■□□□□ 0.16
CPNE1-227ENST00000498056 ZNF287Q9HBT7 754 aa16.08■□□□□ 0.16
CPNE1-227ENST00000498056 SHMT1P34896 483 aa16.07■□□□□ 0.16
CPNE1-227ENST00000498056 CDK8P49336 464 aa16.07■□□□□ 0.16
CPNE1-227ENST00000498056 TRDNQ13061 729 aa16.07■□□□□ 0.16
CPNE1-227ENST00000498056 STOX1Q6ZVD7 989 aa16.07■□□□□ 0.16
CPNE1-227ENST00000498056 RALYLQ86SE5 291 aaKnown RBP16.07■□□□□ 0.16
CPNE1-227ENST00000498056 FOXP4Q8IVH2 680 aaPredicted RBP16.07■□□□□ 0.16
CPNE1-227ENST00000498056 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.07■□□□□ 0.16
CPNE1-227ENST00000498056 ANGEL1Q9UNK9 670 aaKnown RBP16.07■□□□□ 0.16
CPNE1-227ENST00000498056 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.07■□□□□ 0.16
CPNE1-227ENST00000498056 E7EWF7 191 aa16.06■□□□□ 0.16
CPNE1-227ENST00000498056 MPHOSPH10O00566 681 aaKnown RBP16.06■□□□□ 0.16
CPNE1-227ENST00000498056 PPP1R12BO60237 982 aaPredicted RBP16.06■□□□□ 0.16
CPNE1-227ENST00000498056 ITGBL1O95965 494 aaPredicted RBP16.06■□□□□ 0.16
CPNE1-227ENST00000498056 C22orf23Q9BZE7 217 aa16.06■□□□□ 0.16
CPNE1-227ENST00000498056 CNNM2Q9H8M5 875 aa16.06■□□□□ 0.16
CPNE1-227ENST00000498056 INCENPQ9NQS7 918 aa16.06■□□□□ 0.16
CPNE1-227ENST00000498056 SNX14Q9Y5W7 946 aa16.06■□□□□ 0.16
CPNE1-227ENST00000498056 TACC3Q9Y6A5 838 aa16.06■□□□□ 0.16
CPNE1-227ENST00000498056 LOC285556D6RIA3 1793 aa16.05■□□□□ 0.16
CPNE1-227ENST00000498056 PLIN4Q96Q06 1357 aa16.05■□□□□ 0.16
CPNE1-227ENST00000498056 PASKQ96RG2 1323 aa16.05■□□□□ 0.16
CPNE1-227ENST00000498056 TSPY2A6NKD2 308 aa16.05■□□□□ 0.16
CPNE1-227ENST00000498056 B4E1Z4 1266 aa16.05■□□□□ 0.16
CPNE1-227ENST00000498056 ORC4O43929 436 aa16.05■□□□□ 0.16
CPNE1-227ENST00000498056 TBC1D12O60347 775 aa16.05■□□□□ 0.16
CPNE1-227ENST00000498056 RANBP6O60518 1105 aaKnown RBP16.05■□□□□ 0.16
CPNE1-227ENST00000498056 PCP11498 1178 aaKnown RBP16.05■□□□□ 0.16
CPNE1-227ENST00000498056 RASA1P20936 1047 aa16.05■□□□□ 0.16
CPNE1-227ENST00000498056 IREB2P48200 963 aaKnown RBP16.05■□□□□ 0.16
CPNE1-227ENST00000498056 KRT32Q14532 448 aa16.05■□□□□ 0.16
CPNE1-227ENST00000498056 MOB2Q70IA6 237 aa16.05■□□□□ 0.16
CPNE1-227ENST00000498056 ARMC9Q7Z3E5 817 aa16.05■□□□□ 0.16
CPNE1-227ENST00000498056 METTL16Q86W50 562 aaKnown RBP16.05■□□□□ 0.16
CPNE1-227ENST00000498056 RASEFQ8IZ41 740 aa16.05■□□□□ 0.16
CPNE1-227ENST00000498056 NCOA7Q8NI08 942 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms