RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 CRACR2BQ8N4Y2 399 aaPredicted RBP14.2□□□□□ -0.14
CUX1-210ENST00000497815 HOOK2Q96ED9 719 aa14.2□□□□□ -0.14
CUX1-210ENST00000497815 PI4KBQ9UBF8 816 aa14.2□□□□□ -0.14
CUX1-210ENST00000497815 DDX60LQ5H9U9 1706 aaKnown RBP14.2□□□□□ -0.14
CUX1-210ENST00000497815 C12orf60Q5U649 245 aa14.19□□□□□ -0.14
CUX1-210ENST00000497815 CST9Q5W186 159 aa14.19□□□□□ -0.14
CUX1-210ENST00000497815 DCAF15Q66K64 600 aa14.19□□□□□ -0.14
CUX1-210ENST00000497815 DYNLL2Q96FJ2 89 aa14.19□□□□□ -0.14
CUX1-210ENST00000497815 DSCC1Q9BVC3 393 aa14.19□□□□□ -0.14
CUX1-210ENST00000497815 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.19□□□□□ -0.143e-8■■■■■ 55.1
CUX1-210ENST00000497815 ANGEL1Q9UNK9 670 aaKnown RBP14.19□□□□□ -0.14
CUX1-210ENST00000497815 PPP1R12BO60237 982 aaPredicted RBP14.18□□□□□ -0.14
CUX1-210ENST00000497815 HAND2P61296 217 aa14.18□□□□□ -0.14
CUX1-210ENST00000497815 ALX1Q15699 326 aa14.18□□□□□ -0.14
CUX1-210ENST00000497815 SBK1Q52WX2 424 aa14.18□□□□□ -0.14
CUX1-210ENST00000497815 ZNF341Q9BYN7 854 aa14.18□□□□□ -0.14
CUX1-210ENST00000497815 LSG1Q9H089 658 aaKnown RBP14.18□□□□□ -0.14
CUX1-210ENST00000497815 GBA2Q9HCG7 927 aaPredicted RBP14.18□□□□□ -0.14
CUX1-210ENST00000497815 SERPINB13Q9UIV8 391 aa14.18□□□□□ -0.14
CUX1-210ENST00000497815 MYH1P12882 1939 aa14.17□□□□□ -0.14
CUX1-210ENST00000497815 BAZ2AQ9UIF9 1905 aaKnown RBP14.17□□□□□ -0.14
CUX1-210ENST00000497815 UBE2Q2LH0YL09 131 aa14.17□□□□□ -0.14
CUX1-210ENST00000497815 USP2O75604 605 aaPredicted RBP14.17□□□□□ -0.14
CUX1-210ENST00000497815 CTDSPL2Q05D32 466 aa14.17□□□□□ -0.14
CUX1-210ENST00000497815 PPARAQ07869 468 aa14.17□□□□□ -0.14
CUX1-210ENST00000497815 ARMC9Q7Z3E5 817 aa14.17□□□□□ -0.14
CUX1-210ENST00000497815 FOXP4Q8IVH2 680 aaPredicted RBP14.17□□□□□ -0.14
CUX1-210ENST00000497815 C2orf69Q8N8R5 385 aa14.17□□□□□ -0.14
CUX1-210ENST00000497815 SLC44A5Q8NCS7 719 aa14.17□□□□□ -0.14
CUX1-210ENST00000497815 EHD4Q9H223 541 aa14.17□□□□□ -0.14
CUX1-210ENST00000497815 DNAJC18Q9H819 358 aa14.17□□□□□ -0.14
CUX1-210ENST00000497815 CTNNA3Q9UI47 895 aa14.17□□□□□ -0.14
CUX1-210ENST00000497815 U3KPZ7 1027 aaPredicted RBP14.17□□□□□ -0.14
CUX1-210ENST00000497815 ZMYM6O95789 1325 aa14.16□□□□□ -0.14
CUX1-210ENST00000497815 SIPA1L1O43166 1804 aa14.16□□□□□ -0.14
CUX1-210ENST00000497815 ZNF213O14771 459 aa14.16□□□□□ -0.14
CUX1-210ENST00000497815 REC8O95072 547 aa14.16□□□□□ -0.14
CUX1-210ENST00000497815 IREB2P48200 963 aaKnown RBP14.16□□□□□ -0.14
CUX1-210ENST00000497815 MAP4K1Q92918 833 aa14.16□□□□□ -0.14
CUX1-210ENST00000497815 WRNIP1Q96S55 665 aa14.16□□□□□ -0.14
CUX1-210ENST00000497815 HERC5Q9UII4 1024 aaKnown RBP14.16□□□□□ -0.14
CUX1-210ENST00000497815 ABT1Q9ULW3 272 aaKnown RBP14.16□□□□□ -0.14
CUX1-210ENST00000497815 RBM8AQ9Y5S9 174 aaKnown RBP14.16□□□□□ -0.14
CUX1-210ENST00000497815 TMEM88BA6NKF7 163 aa14.15□□□□□ -0.14
CUX1-210ENST00000497815 TBC1D12O60347 775 aa14.15□□□□□ -0.14
CUX1-210ENST00000497815 PRDM1O75626 825 aa14.15□□□□□ -0.14
CUX1-210ENST00000497815 SLC3A2P08195 630 aaKnown RBP14.15□□□□□ -0.14
CUX1-210ENST00000497815 CDK8P49336 464 aa14.15□□□□□ -0.14
CUX1-210ENST00000497815 APLP1P51693 650 aa14.15□□□□□ -0.14
CUX1-210ENST00000497815 IMMTQ16891 758 aaKnown RBP14.15□□□□□ -0.14
CUX1-210ENST00000497815 C8orf34Q49A92 452 aa14.15□□□□□ -0.14
CUX1-210ENST00000497815 ZKSCAN4Q969J2 545 aaPredicted RBP14.15□□□□□ -0.14
CUX1-210ENST00000497815 INCENPQ9NQS7 918 aa14.15□□□□□ -0.14
CUX1-210ENST00000497815 LAMB1P07942 1786 aa14.14□□□□□ -0.15
CUX1-210ENST00000497815 PAPPA2Q9BXP8 1791 aa14.14□□□□□ -0.15
CUX1-210ENST00000497815 ROBO3Q96MS0 1386 aa14.14□□□□□ -0.15
CUX1-210ENST00000497815 PHF20L1A8MW92 1017 aa14.14□□□□□ -0.15
CUX1-210ENST00000497815 GDF11O95390 407 aa14.14□□□□□ -0.15
CUX1-210ENST00000497815 INPP5BP32019 993 aa14.14□□□□□ -0.15
CUX1-210ENST00000497815 SHMT1P34896 483 aa14.14□□□□□ -0.15
CUX1-210ENST00000497815 HUNKP57058 714 aa14.14□□□□□ -0.15
CUX1-210ENST00000497815 C1QTNF8P60827 252 aa14.14□□□□□ -0.15
CUX1-210ENST00000497815 FKBP1BP68106 108 aa14.14□□□□□ -0.15
CUX1-210ENST00000497815 MAP3K10Q02779 954 aa14.14□□□□□ -0.15
CUX1-210ENST00000497815 GABPAQ06546 454 aa14.14□□□□□ -0.15
CUX1-210ENST00000497815 RRP1BQ14684 758 aaKnown RBP14.14□□□□□ -0.15
CUX1-210ENST00000497815 C16orf86Q6ZW13 317 aa14.14□□□□□ -0.15
CUX1-210ENST00000497815 METTL16Q86W50 562 aaKnown RBP14.14□□□□□ -0.15
CUX1-210ENST00000497815 TBC1D10CQ8IV04 446 aa14.14□□□□□ -0.15
CUX1-210ENST00000497815 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.14□□□□□ -0.15
CUX1-210ENST00000497815 KLRG1Q96E93 195 aa14.14□□□□□ -0.15
CUX1-210ENST00000497815 NBPF3Q9H094 633 aa14.14□□□□□ -0.15
CUX1-210ENST00000497815 MKNK2Q9HBH9 465 aa14.14□□□□□ -0.15
CUX1-210ENST00000497815 TOMM22Q9NS69 142 aa14.14□□□□□ -0.15
CUX1-210ENST00000497815 SWAP70Q9UH65 585 aa14.14□□□□□ -0.15
CUX1-210ENST00000497815 MPHOSPH10O00566 681 aaKnown RBP14.13□□□□□ -0.15
CUX1-210ENST00000497815 SEC24BO95487 1268 aa14.13□□□□□ -0.15
CUX1-210ENST00000497815 MAP3K9P80192 1104 aa14.13□□□□□ -0.15
CUX1-210ENST00000497815 PDE4BQ07343 736 aa14.13□□□□□ -0.15
CUX1-210ENST00000497815 VGLL4Q14135 290 aa14.13□□□□□ -0.15
CUX1-210ENST00000497815 SHROOM1Q2M3G4 852 aaPredicted RBP14.13□□□□□ -0.15
CUX1-210ENST00000497815 RRP12Q5JTH9 1297 aaKnown RBP14.13□□□□□ -0.15
CUX1-210ENST00000497815 TATDN1Q6P1N9 297 aa14.13□□□□□ -0.15
CUX1-210ENST00000497815 CLMNQ96JQ2 1002 aa14.13□□□□□ -0.15
CUX1-210ENST00000497815 ZNF112Q9UJU3 913 aa14.13□□□□□ -0.15
CUX1-210ENST00000497815 ANAPC4Q9UJX5 808 aa14.13□□□□□ -0.15
CUX1-210ENST00000497815 CSADQ9Y600 493 aa14.13□□□□□ -0.15
CUX1-210ENST00000497815 TACC3Q9Y6A5 838 aa14.13□□□□□ -0.15
CUX1-210ENST00000497815 TRPM7Q96QT4 1865 aa14.12□□□□□ -0.15
CUX1-210ENST00000497815 CYP21A2P08686 494 aa14.12□□□□□ -0.15
CUX1-210ENST00000497815 JAG1P78504 1218 aa14.12□□□□□ -0.15
CUX1-210ENST00000497815 HTRA3P83110 453 aa14.12□□□□□ -0.15
CUX1-210ENST00000497815 MAP3K11Q16584 847 aa14.12□□□□□ -0.15
CUX1-210ENST00000497815 CERKLQ49MI3 558 aaPredicted RBP14.12□□□□□ -0.15
CUX1-210ENST00000497815 CREB3L3Q68CJ9 461 aa14.12□□□□□ -0.15
CUX1-210ENST00000497815 MFSD6Q6ZSS7 791 aa14.12□□□□□ -0.15
CUX1-210ENST00000497815 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.12□□□□□ -0.15
CUX1-210ENST00000497815 PAXIP1Q6ZW49 1069 aaPredicted RBP14.12□□□□□ -0.15
CUX1-210ENST00000497815 SAPCD2Q86UD0 394 aa14.12□□□□□ -0.15
CUX1-210ENST00000497815 ANKRD13AQ8IZ07 590 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms