RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 IGHV3-33P01772 117 aa2.14□□□□□ -2.07
CD44-217ENST00000525348 HMGN2P05204 90 aaKnown RBP2.14□□□□□ -2.07
CD44-217ENST00000525348 MIFP14174 115 aa2.14□□□□□ -2.07
CD44-217ENST00000525348 SMIM11AP58511 58 aa2.14□□□□□ -2.07
CD44-217ENST00000525348 ATXN8Q156A1 80 aa2.14□□□□□ -2.07
CD44-217ENST00000525348 LY6EQ16553 131 aa2.14□□□□□ -2.07
CD44-217ENST00000525348 MRPL51Q4U2R6 128 aaKnown RBP2.14□□□□□ -2.07
CD44-217ENST00000525348 C2orf82Q6UX34 121 aa2.14□□□□□ -2.07
CD44-217ENST00000525348 ZNF818PQ6ZRF7 136 aa2.14□□□□□ -2.07
CD44-217ENST00000525348 TMEM61Q8N0U2 210 aa2.14□□□□□ -2.07
CD44-217ENST00000525348 RPRMLQ8N4K4 120 aa2.14□□□□□ -2.07
CD44-217ENST00000525348 FAM216BQ8N7L0 139 aa2.14□□□□□ -2.07
CD44-217ENST00000525348 NPBQ8NG41 125 aa2.14□□□□□ -2.07
CD44-217ENST00000525348 CLEC2BQ92478 149 aa2.14□□□□□ -2.07
CD44-217ENST00000525348 DYNLRB1Q9NP97 96 aa2.14□□□□□ -2.07
CD44-217ENST00000525348 PSENENQ9NZ42 101 aa2.14□□□□□ -2.07
CD44-217ENST00000525348 MED13Q9UHV7 2174 aa2.14□□□□□ -2.07
CD44-217ENST00000525348 VPS13AQ96RL7 3174 aa2.14□□□□□ -2.07
CD44-217ENST00000525348 MUC19Q7Z5P9 8384 aa2.13□□□□□ -2.07
CD44-217ENST00000525348 CHD6Q8TD26 2715 aa2.13□□□□□ -2.07
CD44-217ENST00000525348 BRWD1Q9NSI6 2320 aa2.13□□□□□ -2.07
CD44-217ENST00000525348 MDC1Q14676 2089 aaKnown RBP2.13□□□□□ -2.07
CD44-217ENST00000525348 TRAV22A0A0B4J277 110 aa2.13□□□□□ -2.07
CD44-217ENST00000525348 IGHV5-51A0A0C4DH38 117 aa2.13□□□□□ -2.07
CD44-217ENST00000525348 TMEM223A0PJW6 202 aa2.13□□□□□ -2.07
CD44-217ENST00000525348 COX7A2P2O60397 106 aa2.13□□□□□ -2.07
CD44-217ENST00000525348 SPINK4O60575 86 aa2.13□□□□□ -2.07
CD44-217ENST00000525348 SPTBP11277 2137 aa2.13□□□□□ -2.07
CD44-217ENST00000525348 BSPH1Q075Z2 132 aa2.13□□□□□ -2.07
CD44-217ENST00000525348 Q5VV11 94 aa2.13□□□□□ -2.07
CD44-217ENST00000525348 SCXQ7RTU7 201 aa2.13□□□□□ -2.07
CD44-217ENST00000525348 LYPD6Q86Y78 171 aa2.13□□□□□ -2.07
CD44-217ENST00000525348 DYNAPQ8N1N2 210 aa2.13□□□□□ -2.07
CD44-217ENST00000525348 PFN4Q8NHR9 129 aa2.13□□□□□ -2.07
CD44-217ENST00000525348 LINC00574Q9H8X3 128 aa2.13□□□□□ -2.07
CD44-217ENST00000525348 NDUFA12Q9UI09 145 aa2.13□□□□□ -2.07
CD44-217ENST00000525348 SPEGQ15772 3267 aa2.13□□□□□ -2.07
CD44-217ENST00000525348 GOLGA4Q13439 2230 aaKnown RBP2.13□□□□□ -2.07
CD44-217ENST00000525348 ZNF407Q9C0G0 2248 aa2.13□□□□□ -2.07
CD44-217ENST00000525348 FRYQ5TBA9 3013 aa2.12□□□□□ -2.07
CD44-217ENST00000525348 EPG5Q9HCE0 2579 aa2.12□□□□□ -2.07
CD44-217ENST00000525348 NBEAQ8NFP9 2946 aa2.12□□□□□ -2.07
CD44-217ENST00000525348 NCOR2Q9Y618 2525 aa2.12□□□□□ -2.07
CD44-217ENST00000525348 FRYLO94915 3013 aa2.12□□□□□ -2.07
CD44-217ENST00000525348 IGHV1-45A0A0A0MS14 117 aa2.12□□□□□ -2.07
CD44-217ENST00000525348 TRBV30A0A0K0K1B3 111 aa2.12□□□□□ -2.07
CD44-217ENST00000525348 C5orf67F2Z3F1 127 aa2.12□□□□□ -2.07
CD44-217ENST00000525348 IGLV1-51P01701 117 aa2.12□□□□□ -2.07
CD44-217ENST00000525348 S100A4P26447 101 aaKnown RBP2.12□□□□□ -2.07
CD44-217ENST00000525348 PLGLAQ15195 96 aa2.12□□□□□ -2.07
CD44-217ENST00000525348 SFTA2Q6UW10 78 aa2.12□□□□□ -2.07
CD44-217ENST00000525348 LYZL2Q7Z4W2 148 aa2.12□□□□□ -2.07
CD44-217ENST00000525348 Q8N6K4 173 aa2.12□□□□□ -2.07
CD44-217ENST00000525348 KLF14Q8TD94 323 aaPredicted RBP2.12□□□□□ -2.07
CD44-217ENST00000525348 RMI2Q96E14 147 aa2.12□□□□□ -2.07
CD44-217ENST00000525348 TMEM141Q96I45 108 aa2.12□□□□□ -2.07
CD44-217ENST00000525348 TIMM21Q9BVV7 248 aa2.12□□□□□ -2.07
CD44-217ENST00000525348 PRO1854Q9UHT4 67 aa2.12□□□□□ -2.07
CD44-217ENST00000525348 TET2Q6N021 2002 aaPredicted RBP2.12□□□□□ -2.07
CD44-217ENST00000525348 CABIN1Q9Y6J0 2220 aa2.11□□□□□ -2.07
CD44-217ENST00000525348 MUC4Q99102 2169 aa2.11□□□□□ -2.07
CD44-217ENST00000525348 A0A087WVE0 104 aa2.11□□□□□ -2.07
CD44-217ENST00000525348 LINC01546A6NGU7 62 aa2.11□□□□□ -2.07
CD44-217ENST00000525348 HCG22E2RYF7 251 aa2.11□□□□□ -2.07
CD44-217ENST00000525348 C19orf84I3L1E1 186 aa2.11□□□□□ -2.07
CD44-217ENST00000525348 J3QKU1 62 aa2.11□□□□□ -2.07
CD44-217ENST00000525348 LEPROTO15243 131 aa2.11□□□□□ -2.07
CD44-217ENST00000525348 IGHV3-43DP0DP04 118 aa2.11□□□□□ -2.07
CD44-217ENST00000525348 FCER1GP30273 86 aa2.11□□□□□ -2.07
CD44-217ENST00000525348 RPL28P46779 137 aaKnown RBP2.11□□□□□ -2.07
CD44-217ENST00000525348 RPL38P63173 70 aaKnown RBP2.11□□□□□ -2.07
CD44-217ENST00000525348 DEFB116Q30KQ4 102 aa2.11□□□□□ -2.07
CD44-217ENST00000525348 ASB16-AS1Q495Z4 193 aa2.11□□□□□ -2.07
CD44-217ENST00000525348 LINC00483Q53H64 154 aa2.11□□□□□ -2.07
CD44-217ENST00000525348 TMEM263Q8WUH6 116 aaKnown RBP2.11□□□□□ -2.07
CD44-217ENST00000525348 B9D2Q9BPU9 175 aa2.11□□□□□ -2.07
CD44-217ENST00000525348 C22orf24Q9Y442 160 aa2.11□□□□□ -2.07
CD44-217ENST00000525348 PHLDA3Q9Y5J5 127 aa2.11□□□□□ -2.07
CD44-217ENST00000525348 FAM186AA6NE01 2351 aa2.1□□□□□ -2.07
CD44-217ENST00000525348 HIVEP2P31629 2446 aa2.1□□□□□ -2.07
CD44-217ENST00000525348 PTPRZ1P23471 2315 aaPredicted RBP2.1□□□□□ -2.07
CD44-217ENST00000525348 IGKV1-6A0A0C4DH72 117 aa2.1□□□□□ -2.07
CD44-217ENST00000525348 IGKV1-39P01597 117 aa2.1□□□□□ -2.07
CD44-217ENST00000525348 IGHV3-30P01768 117 aa2.1□□□□□ -2.07
CD44-217ENST00000525348 IGKV1D-39P04432 117 aa2.1□□□□□ -2.07
CD44-217ENST00000525348 SAA1P0DJI8 122 aaPredicted RBP2.1□□□□□ -2.07
CD44-217ENST00000525348 IGHV3-30-5P0DP03 117 aa2.1□□□□□ -2.07
CD44-217ENST00000525348 SPINT3P49223 89 aa2.1□□□□□ -2.07
CD44-217ENST00000525348 FXYD3Q14802 87 aa2.1□□□□□ -2.07
CD44-217ENST00000525348 IGFL1Q6UW32 110 aa2.1□□□□□ -2.07
CD44-217ENST00000525348 ORMDL3Q8N138 153 aa2.1□□□□□ -2.07
CD44-217ENST00000525348 DEFB124Q8NES8 71 aa2.1□□□□□ -2.07
CD44-217ENST00000525348 FAM167A-AS1Q96KT0 104 aa2.1□□□□□ -2.07
CD44-217ENST00000525348 Q96M85 177 aa2.1□□□□□ -2.07
CD44-217ENST00000525348 WFDC6Q9BQY6 131 aa2.1□□□□□ -2.07
CD44-217ENST00000525348 CCL28Q9NRJ3 127 aa2.1□□□□□ -2.07
CD44-217ENST00000525348 LHFPL6Q9Y693 200 aa2.1□□□□□ -2.07
CD44-217ENST00000525348 ASPMQ8IZT6 3477 aa2.1□□□□□ -2.07
CD44-217ENST00000525348 TENM4Q6N022 2769 aa2.1□□□□□ -2.07
CD44-217ENST00000525348 PI4KAP42356 2102 aa2.09□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms