RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 C15orf54Q8N8G6 183 aa4.47□□□□□ -1.69
CCDC88A-213ENST00000476903 DNAJC30Q96LL9 226 aa4.47□□□□□ -1.69
CCDC88A-213ENST00000476903 SPANXA1Q9NS26 97 aa4.47□□□□□ -1.69
CCDC88A-213ENST00000476903 IGHV1-24A0A0C4DH33 117 aa4.46□□□□□ -1.7
CCDC88A-213ENST00000476903 M0QY20 66 aa4.46□□□□□ -1.7
CCDC88A-213ENST00000476903 NPSP0C0P6 89 aa4.46□□□□□ -1.7
CCDC88A-213ENST00000476903 INAFM2P0DMQ5 153 aa4.46□□□□□ -1.7
CCDC88A-213ENST00000476903 HAMPP81172 84 aa4.46□□□□□ -1.7
CCDC88A-213ENST00000476903 C14orf177Q52M58 125 aa4.46□□□□□ -1.7
CCDC88A-213ENST00000476903 LYZL1Q6UWQ5 148 aa4.46□□□□□ -1.7
CCDC88A-213ENST00000476903 ENHOQ6UWT2 76 aa4.46□□□□□ -1.7
CCDC88A-213ENST00000476903 ALKAL2Q6UX46 152 aa4.46□□□□□ -1.7
CCDC88A-213ENST00000476903 NTM-AS1Q6ZSK4 140 aa4.46□□□□□ -1.7
CCDC88A-213ENST00000476903 DPH3P1Q9H4G8 78 aa4.46□□□□□ -1.7
CCDC88A-213ENST00000476903 RPP21Q9H633 154 aaKnown RBP4.46□□□□□ -1.7
CCDC88A-213ENST00000476903 TSTD3H0UI37 97 aa4.45□□□□□ -1.7
CCDC88A-213ENST00000476903 SMR3BP02814 79 aaPredicted RBP4.45□□□□□ -1.7
CCDC88A-213ENST00000476903 NTF3P20783 257 aa4.45□□□□□ -1.7
CCDC88A-213ENST00000476903 CTRLP40313 264 aa4.45□□□□□ -1.7
CCDC88A-213ENST00000476903 TWIST1Q15672 202 aa4.45□□□□□ -1.7
CCDC88A-213ENST00000476903 MIAQ16674 131 aa4.45□□□□□ -1.7
CCDC88A-213ENST00000476903 IQCJQ1A5X6 159 aa4.45□□□□□ -1.7
CCDC88A-213ENST00000476903 RASL11AQ6T310 242 aa4.45□□□□□ -1.7
CCDC88A-213ENST00000476903 CD164L2Q6UWJ8 174 aa4.45□□□□□ -1.7
CCDC88A-213ENST00000476903 Q6ZSA8 131 aa4.45□□□□□ -1.7
CCDC88A-213ENST00000476903 RNASE7Q9H1E1 156 aaKnown RBP4.45□□□□□ -1.7
CCDC88A-213ENST00000476903 A0A0U1RRA0 63 aa4.44□□□□□ -1.7
CCDC88A-213ENST00000476903 TMEM250H0YL14 139 aa4.44□□□□□ -1.7
CCDC88A-213ENST00000476903 K7EN84 100 aa4.44□□□□□ -1.7
CCDC88A-213ENST00000476903 HLA-DQA1P01909 254 aa4.44□□□□□ -1.7
CCDC88A-213ENST00000476903 RBX1P62877 108 aa4.44□□□□□ -1.7
CCDC88A-213ENST00000476903 GAGE6Q13070 117 aa4.44□□□□□ -1.7
CCDC88A-213ENST00000476903 ERASQ7Z444 233 aa4.44□□□□□ -1.7
CCDC88A-213ENST00000476903 LINC00269Q8N2A0 174 aa4.44□□□□□ -1.7
CCDC88A-213ENST00000476903 LYPD6BQ8NI32 183 aa4.44□□□□□ -1.7
CCDC88A-213ENST00000476903 PGLYRP4Q96LB8 373 aa4.44□□□□□ -1.7
CCDC88A-213ENST00000476903 TMEM243Q9BU79 118 aa4.44□□□□□ -1.7
CCDC88A-213ENST00000476903 CNFNQ9BYD5 112 aa4.44□□□□□ -1.7
CCDC88A-213ENST00000476903 NIT2Q9NQR4 276 aa4.44□□□□□ -1.7
CCDC88A-213ENST00000476903 PRR34Q9NV39 138 aa4.44□□□□□ -1.7
CCDC88A-213ENST00000476903 UBE2L6O14933 153 aa4.43□□□□□ -1.7
CCDC88A-213ENST00000476903 SUMO2P61956 95 aaKnown RBP4.43□□□□□ -1.7
CCDC88A-213ENST00000476903 CLPSL2Q6UWE3 100 aa4.43□□□□□ -1.7
CCDC88A-213ENST00000476903 MRPL52Q86TS9 123 aaKnown RBP4.43□□□□□ -1.7
CCDC88A-213ENST00000476903 CTDSP1Q9GZU7 261 aa4.43□□□□□ -1.7
CCDC88A-213ENST00000476903 VPS13BQ7Z7G8 4022 aa4.42□□□□□ -1.7
CCDC88A-213ENST00000476903 A0A1B0GUV1 79 aa4.42□□□□□ -1.7
CCDC88A-213ENST00000476903 A8MWL6 223 aa4.42□□□□□ -1.7
CCDC88A-213ENST00000476903 AMTP48728 403 aa4.42□□□□□ -1.7
CCDC88A-213ENST00000476903 HERV-K104P63124 156 aa4.42□□□□□ -1.7
CCDC88A-213ENST00000476903 REG3AQ06141 175 aa4.42□□□□□ -1.7
CCDC88A-213ENST00000476903 FAT1Q14517 4588 aa4.42□□□□□ -1.7
CCDC88A-213ENST00000476903 LINC01620Q4KN68 170 aa4.42□□□□□ -1.7
CCDC88A-213ENST00000476903 PDZD11Q5EBL8 140 aa4.42□□□□□ -1.7
CCDC88A-213ENST00000476903 FAM231DQ6ZW35 169 aa4.42□□□□□ -1.7
CCDC88A-213ENST00000476903 BOD1L2Q8IYS8 172 aa4.42□□□□□ -1.7
CCDC88A-213ENST00000476903 GTSF1Q8WW33 167 aa4.42□□□□□ -1.7
CCDC88A-213ENST00000476903 EIF5A2Q9GZV4 153 aaKnown RBP4.42□□□□□ -1.7
CCDC88A-213ENST00000476903 CSDC2Q9Y534 153 aaKnown RBP4.42□□□□□ -1.7
CCDC88A-213ENST00000476903 FLG2Q5D862 2391 aaPredicted RBP4.41□□□□□ -1.7
CCDC88A-213ENST00000476903 SRRM2Q9UQ35 2752 aaKnown RBP4.41□□□□□ -1.7
CCDC88A-213ENST00000476903 IGLV4-60A0A075B6I1 120 aa4.41□□□□□ -1.7
CCDC88A-213ENST00000476903 TRAV8-4A0A0B4J246 113 aa4.41□□□□□ -1.7
CCDC88A-213ENST00000476903 TRAV26-2A0A0B4J265 109 aa4.41□□□□□ -1.7
CCDC88A-213ENST00000476903 HSBP1O75506 76 aa4.41□□□□□ -1.7
CCDC88A-213ENST00000476903 TEX261Q6UWH6 196 aa4.41□□□□□ -1.7
CCDC88A-213ENST00000476903 SCXQ7RTU7 201 aa4.41□□□□□ -1.7
CCDC88A-213ENST00000476903 GATD1Q8NB37 220 aa4.41□□□□□ -1.7
CCDC88A-213ENST00000476903 C20orf203Q8NBC4 194 aa4.41□□□□□ -1.7
CCDC88A-213ENST00000476903 BORCS7Q96B45 105 aa4.41□□□□□ -1.7
CCDC88A-213ENST00000476903 SMIM7Q9BQ49 75 aa4.41□□□□□ -1.7
CCDC88A-213ENST00000476903 CHAC1Q9BUX1 264 aa4.41□□□□□ -1.7
CCDC88A-213ENST00000476903 MAP1LC3CQ9BXW4 147 aa4.41□□□□□ -1.7
CCDC88A-213ENST00000476903 IGLV10-54A0A075B6I4 117 aa4.4□□□□□ -1.71
CCDC88A-213ENST00000476903 ZNF727A8MUV8 499 aa4.4□□□□□ -1.71
CCDC88A-213ENST00000476903 KRTAP9-6A8MVA2 160 aa4.4□□□□□ -1.71
CCDC88A-213ENST00000476903 NCR2O95944 276 aa4.4□□□□□ -1.71
CCDC88A-213ENST00000476903 PRSS1P07477 247 aa4.4□□□□□ -1.71
CCDC88A-213ENST00000476903 FOXA3P55318 350 aaPredicted RBP4.4□□□□□ -1.71
CCDC88A-213ENST00000476903 SERTAD4-AS1Q5TG53 156 aa4.4□□□□□ -1.71
CCDC88A-213ENST00000476903 KRTAP26-1Q6PEX3 210 aa4.4□□□□□ -1.71
CCDC88A-213ENST00000476903 LINC01551Q86U37 167 aa4.4□□□□□ -1.71
CCDC88A-213ENST00000476903 DEFB104AQ8WTQ1 72 aa4.4□□□□□ -1.71
CCDC88A-213ENST00000476903 GFRA4Q9GZZ7 299 aa4.4□□□□□ -1.71
CCDC88A-213ENST00000476903 A0A1B0GUT8 65 aa4.39□□□□□ -1.71
CCDC88A-213ENST00000476903 A0A1B0GV90 55 aa4.39□□□□□ -1.71
CCDC88A-213ENST00000476903 FAM231BA6NCW3 169 aa4.39□□□□□ -1.71
CCDC88A-213ENST00000476903 HIGD1CA8MV81 97 aa4.39□□□□□ -1.71
CCDC88A-213ENST00000476903 H7C423 109 aa4.39□□□□□ -1.71
CCDC88A-213ENST00000476903 DLEU1O43261 78 aa4.39□□□□□ -1.71
CCDC88A-213ENST00000476903 APCSP02743 223 aa4.39□□□□□ -1.71
CCDC88A-213ENST00000476903 MT3P25713 68 aa4.39□□□□□ -1.71
CCDC88A-213ENST00000476903 AMMECR1LQ6DCA0 310 aa4.39□□□□□ -1.71
CCDC88A-213ENST00000476903 PRSS3P2Q8NHM4 247 aa4.39□□□□□ -1.71
CCDC88A-213ENST00000476903 CIRBP-AS1Q8TBR5 109 aa4.39□□□□□ -1.71
CCDC88A-213ENST00000476903 TSKUQ8WUA8 353 aa4.39□□□□□ -1.71
CCDC88A-213ENST00000476903 RPL39LQ96EH5 51 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-213ENST00000476903 SPANXB1Q9NS25 103 aaPredicted RBP4.39□□□□□ -1.71
CCDC88A-213ENST00000476903 DNAH8Q96JB1 4490 aa4.39□□□□□ -1.71
CCDC88A-213ENST00000476903 DMBT1Q9UGM3 2413 aaPredicted RBP4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 108.4 ms