RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 IGLV2-11P01706 119 aa9.91□□□□□ -0.82
USP40-208ENST00000450966 OXLD1Q5BKU9 147 aa9.91□□□□□ -0.82
USP40-208ENST00000450966 SMIM11BQ8TCY0 68 aa9.91□□□□□ -0.82
USP40-208ENST00000450966 H0Y9J4 135 aa9.91□□□□□ -0.82
USP40-208ENST00000450966 SBSPONQ8IVN8 264 aa9.91□□□□□ -0.82
USP40-208ENST00000450966 Q8N3U1 123 aa9.91□□□□□ -0.82
USP40-208ENST00000450966 F8W735 103 aaPredicted RBP9.9□□□□□ -0.82
USP40-208ENST00000450966 ESM1Q9NQ30 184 aa9.9□□□□□ -0.82
USP40-208ENST00000450966 Q8N9W7 124 aa9.9□□□□□ -0.82
USP40-208ENST00000450966 PLXND1Q9Y4D7 1925 aa9.9□□□□□ -0.82
USP40-208ENST00000450966 KIF26AQ9ULI4 1882 aaPredicted RBP9.9□□□□□ -0.82
USP40-208ENST00000450966 DSCAML1Q8TD84 2053 aa9.9□□□□□ -0.82
USP40-208ENST00000450966 BRWD1-AS2P59051 145 aa9.9□□□□□ -0.83
USP40-208ENST00000450966 Q8N9L7 120 aa9.9□□□□□ -0.83
USP40-208ENST00000450966 FAM30AQ9NZY2 134 aa9.89□□□□□ -0.83
USP40-208ENST00000450966 Q6YL49 198 aa9.89□□□□□ -0.83
USP40-208ENST00000450966 CELA1Q9UNI1 258 aa9.89□□□□□ -0.83
USP40-208ENST00000450966 RPL28P46779 137 aaKnown RBP9.89□□□□□ -0.83
USP40-208ENST00000450966 CNFNQ9BYD5 112 aa9.89□□□□□ -0.83
USP40-208ENST00000450966 Q6ZPA2 131 aa9.89□□□□□ -0.83
USP40-208ENST00000450966 MALRD1Q5VYJ5 2156 aa9.89□□□□□ -0.83
USP40-208ENST00000450966 MED12LQ86YW9 2145 aa9.88□□□□□ -0.83
USP40-208ENST00000450966 NTM-AS1Q6ZSK4 140 aa9.88□□□□□ -0.83
USP40-208ENST00000450966 IGLV1-47P01700 117 aa9.88□□□□□ -0.83
USP40-208ENST00000450966 LMO4P61968 165 aa9.88□□□□□ -0.83
USP40-208ENST00000450966 NANOS2P60321 138 aaKnown RBP9.87□□□□□ -0.83
USP40-208ENST00000450966 PCNX1Q96RV3 2341 aa9.87□□□□□ -0.83
USP40-208ENST00000450966 E7EUB6 86 aa9.87□□□□□ -0.83
USP40-208ENST00000450966 C6orf99Q4VX62 202 aa9.87□□□□□ -0.83
USP40-208ENST00000450966 ZFP36P26651 326 aaKnown RBP9.87□□□□□ -0.83
USP40-208ENST00000450966 SPRNQ5BIV9 151 aa9.87□□□□□ -0.83
USP40-208ENST00000450966 C22orf34Q6ZV56 151 aa9.87□□□□□ -0.83
USP40-208ENST00000450966 TMEM131Q92545 1883 aa9.87□□□□□ -0.83
USP40-208ENST00000450966 IGLV10-54A0A075B6I4 117 aa9.86□□□□□ -0.83
USP40-208ENST00000450966 A0A096LNJ9 63 aa9.86□□□□□ -0.83
USP40-208ENST00000450966 C4orf48Q5BLP8 95 aa9.86□□□□□ -0.83
USP40-208ENST00000450966 LINC00846Q9NV44 126 aa9.86□□□□□ -0.83
USP40-208ENST00000450966 ZGRF1Q86YA3 2104 aa9.86□□□□□ -0.83
USP40-208ENST00000450966 WFDC10BQ8IUB3 73 aa9.86□□□□□ -0.83
USP40-208ENST00000450966 EDN2P20800 178 aa9.85□□□□□ -0.83
USP40-208ENST00000450966 Q8N7P7 452 aa9.85□□□□□ -0.83
USP40-208ENST00000450966 C19orf84I3L1E1 186 aa9.85□□□□□ -0.83
USP40-208ENST00000450966 FAM19A1Q7Z5A9 133 aa9.85□□□□□ -0.83
USP40-208ENST00000450966 FAM19A4Q96LR4 140 aa9.85□□□□□ -0.83
USP40-208ENST00000450966 ZFAND2AQ8N6M9 145 aa9.85□□□□□ -0.83
USP40-208ENST00000450966 RITA1Q96K30 269 aa9.84□□□□□ -0.83
USP40-208ENST00000450966 CRIP3Q6Q6R5 217 aa9.84□□□□□ -0.83
USP40-208ENST00000450966 LINC00467Q9BRT7 94 aa9.84□□□□□ -0.83
USP40-208ENST00000450966 M0QY20 66 aa9.84□□□□□ -0.84
USP40-208ENST00000450966 IGIPA6NJ69 53 aa9.83□□□□□ -0.84
USP40-208ENST00000450966 DEFB135Q30KP9 77 aa9.83□□□□□ -0.84
USP40-208ENST00000450966 C14orf177Q52M58 125 aa9.83□□□□□ -0.84
USP40-208ENST00000450966 Q6ZQY7 126 aa9.83□□□□□ -0.84
USP40-208ENST00000450966 ODF3BA8MYP8 253 aa9.83□□□□□ -0.84
USP40-208ENST00000450966 POLR2KP53803 58 aaKnown RBP9.83□□□□□ -0.84
USP40-208ENST00000450966 C1orf158Q8N1D5 194 aa9.83□□□□□ -0.84
USP40-208ENST00000450966 KIAA1549Q9HCM3 1950 aa9.82□□□□□ -0.84
USP40-208ENST00000450966 CRYGDP07320 174 aa9.82□□□□□ -0.84
USP40-208ENST00000450966 NHLRC4P0CG21 123 aaPredicted RBP9.82□□□□□ -0.84
USP40-208ENST00000450966 LINC00574Q9H8X3 128 aa9.82□□□□□ -0.84
USP40-208ENST00000450966 C3orf84H3BNL1 204 aa9.82□□□□□ -0.84
USP40-208ENST00000450966 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.82□□□□□ -0.84
USP40-208ENST00000450966 LINC00336Q6ZUF6 198 aa9.82□□□□□ -0.84
USP40-208ENST00000450966 ALPK3Q96L96 1907 aa9.82□□□□□ -0.84
USP40-208ENST00000450966 IGLV4-69A0A075B6H9 119 aa9.82□□□□□ -0.84
USP40-208ENST00000450966 INAFM1C9JVW0 142 aa9.81□□□□□ -0.84
USP40-208ENST00000450966 POM121L12Q8N7R1 296 aa9.81□□□□□ -0.84
USP40-208ENST00000450966 FAM208BQ5VWN6 2430 aa9.81□□□□□ -0.84
USP40-208ENST00000450966 HILS1P60008 231 aa9.81□□□□□ -0.84
USP40-208ENST00000450966 C11orf71Q6IPW1 123 aa9.81□□□□□ -0.84
USP40-208ENST00000450966 LINC00269Q8N2A0 174 aa9.81□□□□□ -0.84
USP40-208ENST00000450966 LY6G6DO95868 133 aa9.81□□□□□ -0.84
USP40-208ENST00000450966 TSHBP01222 138 aa9.8□□□□□ -0.84
USP40-208ENST00000450966 IGF1P05019 195 aa9.8□□□□□ -0.84
USP40-208ENST00000450966 TSPEAR-AS2P59090 65 aa9.79□□□□□ -0.84
USP40-208ENST00000450966 BEAN1Q3B7T3 259 aa9.79□□□□□ -0.84
USP40-208ENST00000450966 WFDC13Q8IUB5 93 aa9.79□□□□□ -0.84
USP40-208ENST00000450966 DENND4CQ5VZ89 1909 aa9.79□□□□□ -0.84
USP40-208ENST00000450966 KIAA1549LQ6ZVL6 1849 aa9.78□□□□□ -0.84
USP40-208ENST00000450966 hDV103S1A0JD37 113 aa9.78□□□□□ -0.84
USP40-208ENST00000450966 C10orf142B7Z368 130 aa9.78□□□□□ -0.84
USP40-208ENST00000450966 PRO0255Q9UI72 69 aa9.78□□□□□ -0.84
USP40-208ENST00000450966 PLCE1Q9P212 2302 aa9.78□□□□□ -0.84
USP40-208ENST00000450966 Q8N814 137 aa9.78□□□□□ -0.84
USP40-208ENST00000450966 LINC00208Q96KT6 92 aa9.78□□□□□ -0.84
USP40-208ENST00000450966 ADAMTS9Q9P2N4 1935 aa9.78□□□□□ -0.84
USP40-208ENST00000450966 ZFHX2Q9C0A1 2572 aaPredicted RBP9.78□□□□□ -0.84
USP40-208ENST00000450966 MED13LQ71F56 2210 aa9.78□□□□□ -0.84
USP40-208ENST00000450966 GAS8-AS1O95177 125 aa9.77□□□□□ -0.84
USP40-208ENST00000450966 KLK12Q9UKR0 248 aa9.77□□□□□ -0.85
USP40-208ENST00000450966 LINC01547P58512 204 aaPredicted RBP9.77□□□□□ -0.85
USP40-208ENST00000450966 LINC01561Q8N1V8 128 aa9.77□□□□□ -0.85
USP40-208ENST00000450966 PLXNB3Q9ULL4 1909 aa9.76□□□□□ -0.85
USP40-208ENST00000450966 A0A087WZ39 114 aa9.76□□□□□ -0.85
USP40-208ENST00000450966 DEFB4AO15263 64 aa9.76□□□□□ -0.85
USP40-208ENST00000450966 PCDH15Q96QU1 1955 aa9.76□□□□□ -0.85
USP40-208ENST00000450966 A0A087WYN8 130 aa9.76□□□□□ -0.85
USP40-208ENST00000450966 B9D2Q9BPU9 175 aa9.76□□□□□ -0.85
USP40-208ENST00000450966 Q6ZVQ6 151 aa9.76□□□□□ -0.85
USP40-208ENST00000450966 C11orf45Q8TAV5 145 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms