RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	ST13	P50502	369 aa	Known RBP	4.86	□□□□□ -1.63
CD44-238	ENST00000534296	RPS26	P62854	115 aa	Known RBP	4.86	□□□□□ -1.63
CD44-238	ENST00000534296	ERVK-24	P63145	666 aa		4.86	□□□□□ -1.63
CD44-238	ENST00000534296	ZNF252P-AS1	Q0IIN9	211 aa		4.86	□□□□□ -1.63
CD44-238	ENST00000534296	TAF1C	Q15572	869 aa	Predicted RBP	4.86	□□□□□ -1.63
CD44-238	ENST00000534296	ARTN	Q5T4W7	220 aa		4.86	□□□□□ -1.63
CD44-238	ENST00000534296	CDC37L1	Q7L3B6	337 aa		4.86	□□□□□ -1.63
CD44-238	ENST00000534296	ZAR1	Q86SH2	424 aa		4.86	□□□□□ -1.63
CD44-238	ENST00000534296	ZDHHC13	Q8IUH4	622 aa		4.86	□□□□□ -1.63
CD44-238	ENST00000534296		Q8N3U1	123 aa		4.86	□□□□□ -1.63
CD44-238	ENST00000534296	KCT2	Q8NC54	265 aa		4.86	□□□□□ -1.63
CD44-238	ENST00000534296	FANCD2OS	Q96PS1	177 aa		4.86	□□□□□ -1.63
CD44-238	ENST00000534296	GSX1	Q9H4S2	264 aa	Predicted RBP	4.86	□□□□□ -1.63
CD44-238	ENST00000534296	PIM2	Q9P1W9	311 aa		4.86	□□□□□ -1.63
CD44-238	ENST00000534296	PRKAG2	Q9UGJ0	569 aa		4.86	□□□□□ -1.63
CD44-238	ENST00000534296	PPP1R9A	Q9ULJ8	1098 aa		4.86	□□□□□ -1.63
CD44-238	ENST00000534296	PCDHA4	Q9UN74	947 aa		4.86	□□□□□ -1.63
CD44-238	ENST00000534296	PAGE1	O75459	146 aa		4.85	□□□□□ -1.63
CD44-238	ENST00000534296	PWP1	Q13610	501 aa		4.85	□□□□□ -1.63
CD44-238	ENST00000534296	TTLL4	Q14679	1199 aa		4.85	□□□□□ -1.63
CD44-238	ENST00000534296	CYP27C1	Q4G0S4	372 aa		4.85	□□□□□ -1.63
CD44-238	ENST00000534296	ZC3H12A	Q5D1E8	599 aa	Known RBP	4.85	□□□□□ -1.63
CD44-238	ENST00000534296	HDX	Q7Z353	690 aa		4.85	□□□□□ -1.63
CD44-238	ENST00000534296	RNF214	Q8ND24	703 aa		4.85	□□□□□ -1.63
CD44-238	ENST00000534296	GIPC2	Q8TF65	315 aa		4.85	□□□□□ -1.63
CD44-238	ENST00000534296	WDR89	Q96FK6	387 aa	Predicted RBP	4.85	□□□□□ -1.63
CD44-238	ENST00000534296	NOC4L	Q9BVI4	516 aa	Known RBP	4.85	□□□□□ -1.63
CD44-238	ENST00000534296	MIR1-1HG	Q9H1L0	117 aa		4.85	□□□□□ -1.63
CD44-238	ENST00000534296	PCOLCE2	Q9UKZ9	415 aa		4.85	□□□□□ -1.63
CD44-238	ENST00000534296	TGFB1	P01137	390 aa		4.84	□□□□□ -1.63
CD44-238	ENST00000534296	HCLS1	P14317	486 aa	Predicted RBP	4.84	□□□□□ -1.63
CD44-238	ENST00000534296	BMP6	P22004	513 aa		4.84	□□□□□ -1.63
CD44-238	ENST00000534296	SSTR4	P31391	388 aa		4.84	□□□□□ -1.63
CD44-238	ENST00000534296	ARHGAP27	Q6ZUM4	889 aa		4.84	□□□□□ -1.63
CD44-238	ENST00000534296	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	4.84	□□□□□ -1.63
CD44-238	ENST00000534296	STK35	Q8TDR2	534 aa		4.84	□□□□□ -1.63
CD44-238	ENST00000534296	FANCG	O15287	622 aa		4.83	□□□□□ -1.64
CD44-238	ENST00000534296	CYP26A1	O43174	497 aa		4.83	□□□□□ -1.64
CD44-238	ENST00000534296	LIG3	P49916	1009 aa		4.83	□□□□□ -1.64
CD44-238	ENST00000534296	MFAP1	P55081	439 aa	Known RBP	4.83	□□□□□ -1.64
CD44-238	ENST00000534296	MAP3K11	Q16584	847 aa		4.83	□□□□□ -1.64
CD44-238	ENST00000534296	GRIN3A	Q8TCU5	1115 aa		4.83	□□□□□ -1.64
CD44-238	ENST00000534296	FAM161B	Q96MY7	647 aa		4.83	□□□□□ -1.64
CD44-238	ENST00000534296	DISC1	Q9NRI5	854 aa		4.83	□□□□□ -1.64
CD44-238	ENST00000534296	ANGEL1	Q9UNK9	670 aa	Known RBP	4.83	□□□□□ -1.64
CD44-238	ENST00000534296	PCDHGC5	Q9Y5F6	944 aa		4.83	□□□□□ -1.64
CD44-238	ENST00000534296	PRAMEF27	A3QJZ7	478 aa		4.82	□□□□□ -1.64
CD44-238	ENST00000534296	DCDC2C	A8MYV0	355 aa		4.82	□□□□□ -1.64
CD44-238	ENST00000534296	BPNT1	O95861	308 aa		4.82	□□□□□ -1.64
CD44-238	ENST00000534296	F13B	P05160	661 aa		4.82	□□□□□ -1.64
CD44-238	ENST00000534296	FOSL1	P15407	271 aa		4.82	□□□□□ -1.64
CD44-238	ENST00000534296	CD97	P48960	835 aa		4.82	□□□□□ -1.64
CD44-238	ENST00000534296	MEI1	Q5TIA1	1274 aa		4.82	□□□□□ -1.64
CD44-238	ENST00000534296	RELL1	Q8IUW5	271 aa		4.82	□□□□□ -1.64
CD44-238	ENST00000534296	ZNF507	Q8TCN5	953 aa		4.82	□□□□□ -1.64
CD44-238	ENST00000534296	ISL2	Q96A47	359 aa		4.82	□□□□□ -1.64
CD44-238	ENST00000534296	LGR6	Q9HBX8	967 aa		4.82	□□□□□ -1.64
CD44-238	ENST00000534296	CACNA2D2	Q9NY47	1150 aa		4.82	□□□□□ -1.64
CD44-238	ENST00000534296	SNCAIP	Q9Y6H5	919 aa		4.82	□□□□□ -1.64
CD44-238	ENST00000534296	USP31	Q70CQ4	1352 aa		4.81	□□□□□ -1.64
CD44-238	ENST00000534296	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	4.81	□□□□□ -1.64
CD44-238	ENST00000534296	HYAL3	O43820	417 aa	Predicted RBP	4.81	□□□□□ -1.64
CD44-238	ENST00000534296	FAM87A	P0C7U9	286 aa		4.81	□□□□□ -1.64
CD44-238	ENST00000534296	ETF1	P62495	437 aa	Known RBP	4.81	□□□□□ -1.64
CD44-238	ENST00000534296	PDE4B	Q07343	736 aa		4.81	□□□□□ -1.64
CD44-238	ENST00000534296	TSNAXIP1	Q2TAA8	658 aa		4.81	□□□□□ -1.64
CD44-238	ENST00000534296	PPM1J	Q5JR12	505 aa		4.81	□□□□□ -1.64
CD44-238	ENST00000534296	WIPI1	Q5MNZ9	446 aa	Predicted RBP	4.81	□□□□□ -1.64
CD44-238	ENST00000534296	OGFOD3	Q6PK18	319 aa		4.81	□□□□□ -1.64
CD44-238	ENST00000534296	AGMO	Q6ZNB7	445 aa		4.81	□□□□□ -1.64
CD44-238	ENST00000534296	LRRC4C	Q9HCJ2	640 aa		4.81	□□□□□ -1.64
CD44-238	ENST00000534296	CSAD	Q9Y600	493 aa		4.81	□□□□□ -1.64
CD44-238	ENST00000534296	TACC3	Q9Y6A5	838 aa		4.81	□□□□□ -1.64
CD44-238	ENST00000534296	PRR19	A6NJB7	356 aa		4.8	□□□□□ -1.64
CD44-238	ENST00000534296	FAM170B	A6NMN3	283 aa		4.8	□□□□□ -1.64
CD44-238	ENST00000534296	ADM	P35318	185 aa		4.8	□□□□□ -1.64
CD44-238	ENST00000534296	CDK5R2	Q13319	367 aa		4.8	□□□□□ -1.64
CD44-238	ENST00000534296	ZBTB37	Q5TC79	503 aa		4.8	□□□□□ -1.64
CD44-238	ENST00000534296	ZNF746	Q6NUN9	644 aa	Predicted RBP	4.8	□□□□□ -1.64
CD44-238	ENST00000534296	ZNF765	Q7L2R6	523 aa		4.8	□□□□□ -1.64
CD44-238	ENST00000534296	C12orf40	Q86WS4	652 aa		4.8	□□□□□ -1.64
CD44-238	ENST00000534296	GAL3ST3	Q96A11	431 aa		4.8	□□□□□ -1.64
CD44-238	ENST00000534296	PLPPR2	Q96GM1	343 aa		4.8	□□□□□ -1.64
CD44-238	ENST00000534296	RNF19A	Q9NV58	838 aa		4.8	□□□□□ -1.64
CD44-238	ENST00000534296	GTF2IRD1	Q9UHL9	959 aa		4.8	□□□□□ -1.64
CD44-238	ENST00000534296	WNT11	O96014	354 aa		4.79	□□□□□ -1.64
CD44-238	ENST00000534296	NEFM	P07197	916 aa		4.79	□□□□□ -1.64
CD44-238	ENST00000534296	GBP2	P32456	591 aa	Predicted RBP	4.79	□□□□□ -1.64
CD44-238	ENST00000534296	SEPT6	Q14141	434 aa		4.79	□□□□□ -1.64
CD44-238	ENST00000534296	LRFN4	Q6PJG9	635 aa		4.79	□□□□□ -1.64
CD44-238	ENST00000534296	SEZ6L2	Q6UXD5	910 aa		4.79	□□□□□ -1.64
CD44-238	ENST00000534296	HS2ST1	Q7LGA3	356 aa		4.79	□□□□□ -1.64
CD44-238	ENST00000534296	CCDC84	Q86UT8	332 aa	Predicted RBP	4.79	□□□□□ -1.64
CD44-238	ENST00000534296	VSIG10L	Q86VR7	867 aa		4.79	□□□□□ -1.64
CD44-238	ENST00000534296	STK11IP	Q8N1F8	1099 aa		4.79	□□□□□ -1.64
CD44-238	ENST00000534296	KRTAP4-8	Q9BYQ9	185 aa		4.79	□□□□□ -1.64
CD44-238	ENST00000534296	C1GALT1	Q9NS00	363 aa		4.79	□□□□□ -1.64
CD44-238	ENST00000534296	BSDC1	Q9NW68	430 aa	Predicted RBP	4.79	□□□□□ -1.64
CD44-238	ENST00000534296	DYNC1LI2	O43237	492 aa	Predicted RBP	4.78	□□□□□ -1.64
CD44-238	ENST00000534296	LRIG2	O94898	1065 aa		4.78	□□□□□ -1.64

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