RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 NAV1Q8NEY1 1877 aa16.22■□□□□ 0.19
PTPRF-202ENST00000372405 PTPDC1A2A3K4 754 aa16.21■□□□□ 0.19
PTPRF-202ENST00000372405 GOLGA8BA8MQT2 603 aa16.21■□□□□ 0.19
PTPRF-202ENST00000372405 FGRP09769 529 aa16.21■□□□□ 0.19
PTPRF-202ENST00000372405 CYP2D6P10635 497 aa16.21■□□□□ 0.19
PTPRF-202ENST00000372405 CDC37L1Q7L3B6 337 aa16.21■□□□□ 0.19
PTPRF-202ENST00000372405 RNF41Q9H4P4 317 aaPredicted RBP16.21■□□□□ 0.19
PTPRF-202ENST00000372405 DDX60LQ5H9U9 1706 aaKnown RBP16.2■□□□□ 0.18
PTPRF-202ENST00000372405 VPS37CA5D8V6 355 aaPredicted RBP16.2■□□□□ 0.18
PTPRF-202ENST00000372405 PPFIA3O75145 1194 aa16.2■□□□□ 0.18
PTPRF-202ENST00000372405 SLC16A10Q8TF71 515 aa16.2■□□□□ 0.18
PTPRF-202ENST00000372405 MXD3Q9BW11 206 aa16.2■□□□□ 0.18
PTPRF-202ENST00000372405 TMX4Q9H1E5 349 aaPredicted RBP16.2■□□□□ 0.18
PTPRF-202ENST00000372405 ADAMTSL1Q8N6G6 1762 aa16.2■□□□□ 0.18
PTPRF-202ENST00000372405 GPR75-ASB3A0A0A6YYF3 556 aa16.2■□□□□ 0.18
PTPRF-202ENST00000372405 GOLGA6L22H0YM25 854 aa16.2■□□□□ 0.18
PTPRF-202ENST00000372405 PDCP20941 246 aa16.2■□□□□ 0.18
PTPRF-202ENST00000372405 SBK1Q52WX2 424 aa16.2■□□□□ 0.18
PTPRF-202ENST00000372405 TMEM67Q5HYA8 995 aa16.2■□□□□ 0.18
PTPRF-202ENST00000372405 APOA5Q6Q788 366 aa16.2■□□□□ 0.18
PTPRF-202ENST00000372405 SGMS1Q86VZ5 419 aa16.2■□□□□ 0.18
PTPRF-202ENST00000372405 FAM163AQ96GL9 167 aaPredicted RBP16.2■□□□□ 0.18
PTPRF-202ENST00000372405 ZKSCAN3Q9BRR0 538 aa16.2■□□□□ 0.18
PTPRF-202ENST00000372405 KCNQ5Q9NR82 932 aa16.2■□□□□ 0.18
PTPRF-202ENST00000372405 TOMM22Q9NS69 142 aa16.2■□□□□ 0.18
PTPRF-202ENST00000372405 FOCADQ5VW36 1801 aa16.2■□□□□ 0.18
PTPRF-202ENST00000372405 GAKO14976 1311 aa16.19■□□□□ 0.18
PTPRF-202ENST00000372405 LDHCP07864 332 aa16.19■□□□□ 0.18
PTPRF-202ENST00000372405 USP17L8P0C7I0 530 aa16.19■□□□□ 0.18
PTPRF-202ENST00000372405 FDPSP14324 419 aaKnown RBP16.19■□□□□ 0.18
PTPRF-202ENST00000372405 LIFRP42702 1097 aa16.19■□□□□ 0.18
PTPRF-202ENST00000372405 BTDP43251 543 aa16.19■□□□□ 0.18
PTPRF-202ENST00000372405 CCDC125Q86Z20 511 aa16.19■□□□□ 0.18
PTPRF-202ENST00000372405 EYA3Q99504 573 aa16.19■□□□□ 0.18
PTPRF-202ENST00000372405 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.19■□□□□ 0.18
PTPRF-202ENST00000372405 IFIT3O14879 490 aaKnown RBP16.18■□□□□ 0.18
PTPRF-202ENST00000372405 PRPF40AO75400 957 aaKnown RBP16.18■□□□□ 0.18
PTPRF-202ENST00000372405 PRDM1O75626 825 aa16.18■□□□□ 0.18
PTPRF-202ENST00000372405 BAG3O95817 575 aa16.18■□□□□ 0.18
PTPRF-202ENST00000372405 DBNDD1Q9H9R9 158 aa16.18■□□□□ 0.18
PTPRF-202ENST00000372405 ARPP21Q9UBL0 812 aaPredicted RBP16.18■□□□□ 0.18
PTPRF-202ENST00000372405 RXRAP19793 462 aa16.18■□□□□ 0.18
PTPRF-202ENST00000372405 PTMSP20962 102 aa16.18■□□□□ 0.18
PTPRF-202ENST00000372405 KCNA3P22001 575 aa16.18■□□□□ 0.18
PTPRF-202ENST00000372405 RHBDL3P58872 404 aa16.18■□□□□ 0.18
PTPRF-202ENST00000372405 GSE1Q14687 1217 aa16.18■□□□□ 0.18
PTPRF-202ENST00000372405 FBXW7Q969H0 707 aa16.18■□□□□ 0.18
PTPRF-202ENST00000372405 MCM9Q9NXL9 1143 aa16.18■□□□□ 0.18
PTPRF-202ENST00000372405 ECM29Q5VYK3 1845 aa16.17■□□□□ 0.18
PTPRF-202ENST00000372405 HMGN5P82970 282 aaKnown RBP16.17■□□□□ 0.18
PTPRF-202ENST00000372405 FERMT3Q86UX7 667 aa16.17■□□□□ 0.18
PTPRF-202ENST00000372405 TGFBRAP1Q8WUH2 860 aa16.17■□□□□ 0.18
PTPRF-202ENST00000372405 ESR2Q92731 530 aa16.17■□□□□ 0.18
PTPRF-202ENST00000372405 MTA3Q9BTC8 594 aa16.17■□□□□ 0.18
PTPRF-202ENST00000372405 MYL10Q9BUA6 226 aa16.17■□□□□ 0.18
PTPRF-202ENST00000372405 GDPD2Q9HCC8 539 aa16.17■□□□□ 0.18
PTPRF-202ENST00000372405 FAM217BQ9NTX9 383 aaPredicted RBP16.17■□□□□ 0.18
PTPRF-202ENST00000372405 DAGLAQ9Y4D2 1042 aa16.17■□□□□ 0.18
PTPRF-202ENST00000372405 PDIA4P13667 645 aaKnown RBP16.17■□□□□ 0.18
PTPRF-202ENST00000372405 CDC27P30260 824 aa16.17■□□□□ 0.18
PTPRF-202ENST00000372405 USP5P45974 858 aa16.17■□□□□ 0.18
PTPRF-202ENST00000372405 SEC23AQ15436 765 aa16.17■□□□□ 0.18
PTPRF-202ENST00000372405 SLC4A8Q2Y0W8 1093 aa16.17■□□□□ 0.18
PTPRF-202ENST00000372405 SUGT1Q9Y2Z0 365 aa16.17■□□□□ 0.18
PTPRF-202ENST00000372405 F8W031 263 aaPredicted RBP16.16■□□□□ 0.18
PTPRF-202ENST00000372405 C21orf2O43822 256 aa16.16■□□□□ 0.18
PTPRF-202ENST00000372405 ORC4O43929 436 aa16.16■□□□□ 0.18
PTPRF-202ENST00000372405 ZBTB7AO95365 584 aa16.16■□□□□ 0.18
PTPRF-202ENST00000372405 PCP11498 1178 aaKnown RBP16.16■□□□□ 0.18
PTPRF-202ENST00000372405 ADD1P35611 737 aaKnown RBP16.16■□□□□ 0.18
PTPRF-202ENST00000372405 C12orf60Q5U649 245 aa16.16■□□□□ 0.18
PTPRF-202ENST00000372405 PODNQ7Z5L7 613 aa16.16■□□□□ 0.18
PTPRF-202ENST00000372405 MICU3Q86XE3 530 aa16.16■□□□□ 0.18
PTPRF-202ENST00000372405 NOL10Q9BSC4 688 aaKnown RBP16.16■□□□□ 0.18
PTPRF-202ENST00000372405 GZF1Q9H116 711 aaPredicted RBP16.16■□□□□ 0.18
PTPRF-202ENST00000372405 CNPY2Q9Y2B0 182 aa16.16■□□□□ 0.18
PTPRF-202ENST00000372405 MYH1P12882 1939 aa16.16■□□□□ 0.18
PTPRF-202ENST00000372405 ZBTB43O43298 467 aa16.15■□□□□ 0.18
PTPRF-202ENST00000372405 DPEP1P16444 411 aa16.15■□□□□ 0.18
PTPRF-202ENST00000372405 METAP2P50579 478 aaKnown RBP eCLIP16.15■□□□□ 0.18
PTPRF-202ENST00000372405 WTAPQ15007 396 aa16.15■□□□□ 0.18
PTPRF-202ENST00000372405 SKOR2Q2VWA4 1001 aaPredicted RBP16.15■□□□□ 0.18
PTPRF-202ENST00000372405 NFXL1Q6ZNB6 911 aa16.15■□□□□ 0.18
PTPRF-202ENST00000372405 MAPKAPK5Q8IW41 473 aa16.15■□□□□ 0.18
PTPRF-202ENST00000372405 FAM184AQ8NB25 1140 aa16.15■□□□□ 0.18
PTPRF-202ENST00000372405 TNKSO95271 1327 aa16.15■□□□□ 0.18
PTPRF-202ENST00000372405 NID2Q14112 1375 aa16.15■□□□□ 0.18
PTPRF-202ENST00000372405 ROBO3Q96MS0 1386 aa16.15■□□□□ 0.18
PTPRF-202ENST00000372405 ECE2O60344 883 aa16.15■□□□□ 0.18
PTPRF-202ENST00000372405 DNM1Q05193 864 aaKnown RBP16.15■□□□□ 0.18
PTPRF-202ENST00000372405 AOC3Q16853 763 aa16.15■□□□□ 0.18
PTPRF-202ENST00000372405 KLHL40Q2TBA0 621 aa16.15■□□□□ 0.18
PTPRF-202ENST00000372405 FAM173BQ6P4H8 233 aa16.15■□□□□ 0.18
PTPRF-202ENST00000372405 CCDC144CPQ8IYA2 1237 aa16.15■□□□□ 0.18
PTPRF-202ENST00000372405 ENAHQ8N8S7 591 aaPredicted RBP16.15■□□□□ 0.18
PTPRF-202ENST00000372405 GPT2Q8TD30 523 aa16.15■□□□□ 0.18
PTPRF-202ENST00000372405 TTF2Q9UNY4 1162 aaKnown RBP16.15■□□□□ 0.18
PTPRF-202ENST00000372405 MYH15Q9Y2K3 1946 aa16.15■□□□□ 0.18
PTPRF-202ENST00000372405 G3V3G9 751 aa16.14■□□□□ 0.17
PTPRF-202ENST00000372405 DHX16O60231 1041 aaKnown RBP16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 104.4 ms