RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 ATL3Q6DD88 541 aa15.46■□□□□ 0.07
CCDC88A-201ENST00000263630 MAN1A2O60476 641 aa15.46■□□□□ 0.07
CCDC88A-201ENST00000263630 BCRP11274 1271 aa15.46■□□□□ 0.07
CCDC88A-201ENST00000263630 ATICP31939 592 aa15.46■□□□□ 0.07
CCDC88A-201ENST00000263630 CCDC152Q4G0S7 254 aa15.46■□□□□ 0.07
CCDC88A-201ENST00000263630 KLF18A0A0U1RQI7 1052 aa15.46■□□□□ 0.07
CCDC88A-201ENST00000263630 LMOD1P29536 600 aaPredicted RBP15.46■□□□□ 0.07
CCDC88A-201ENST00000263630 KRT12Q99456 494 aa15.46■□□□□ 0.07
CCDC88A-201ENST00000263630 SEC23IPQ9Y6Y8 1000 aaKnown RBP15.46■□□□□ 0.07
CCDC88A-201ENST00000263630 VPS41P49754 854 aa15.46■□□□□ 0.07
CCDC88A-201ENST00000263630 IQUBQ8NA54 791 aa15.46■□□□□ 0.07
CCDC88A-201ENST00000263630 GTF3C6Q969F1 213 aa15.46■□□□□ 0.07
CCDC88A-201ENST00000263630 TDRD9Q8NDG6 1382 aaKnown RBP15.46■□□□□ 0.07
CCDC88A-201ENST00000263630 SERPINB6P35237 376 aa15.46■□□□□ 0.06
CCDC88A-201ENST00000263630 MRRFQ96E11 262 aaKnown RBP15.46■□□□□ 0.06
CCDC88A-201ENST00000263630 CLSTN2Q9H4D0 955 aa15.46■□□□□ 0.06
CCDC88A-201ENST00000263630 POTEB3A0JP26 581 aa15.46■□□□□ 0.06
CCDC88A-201ENST00000263630 P4HA1P13674 534 aa15.46■□□□□ 0.06
CCDC88A-201ENST00000263630 AKNAD1Q5T1N1 836 aa15.46■□□□□ 0.06
CCDC88A-201ENST00000263630 RASIP1Q5U651 963 aa15.46■□□□□ 0.06
CCDC88A-201ENST00000263630 POTEBQ6S5H4 581 aa15.46■□□□□ 0.06
CCDC88A-201ENST00000263630 CEP19Q96LK0 163 aa15.46■□□□□ 0.06
CCDC88A-201ENST00000263630 SPATS2LQ9NUQ6 558 aaKnown RBP15.46■□□□□ 0.06
CCDC88A-201ENST00000263630 SUPT6HQ7KZ85 1726 aaKnown RBP15.45■□□□□ 0.06
CCDC88A-201ENST00000263630 BACH1O14867 736 aa15.45■□□□□ 0.06
CCDC88A-201ENST00000263630 CFAP221Q4G0U5 840 aa15.45■□□□□ 0.06
CCDC88A-201ENST00000263630 DCUN1D2Q6PH85 259 aa15.45■□□□□ 0.06
CCDC88A-201ENST00000263630 SV2BQ7L1I2 683 aa15.45■□□□□ 0.06
CCDC88A-201ENST00000263630 PDE6AP16499 860 aa15.45■□□□□ 0.06
CCDC88A-201ENST00000263630 PDXDC1Q6P996 788 aa15.45■□□□□ 0.06
CCDC88A-201ENST00000263630 EFCC1Q9HA90 598 aa15.45■□□□□ 0.06
CCDC88A-201ENST00000263630 DBF4Q9UBU7 674 aaPredicted RBP15.45■□□□□ 0.06
CCDC88A-201ENST00000263630 BAIAP2L1Q9UHR4 511 aa15.45■□□□□ 0.06
CCDC88A-201ENST00000263630 SPTLC2O15270 562 aa15.45■□□□□ 0.06
CCDC88A-201ENST00000263630 RSBN1LQ6PCB5 846 aaPredicted RBP15.45■□□□□ 0.06
CCDC88A-201ENST00000263630 HACE1Q8IYU2 909 aa15.45■□□□□ 0.06
CCDC88A-201ENST00000263630 CAMSAP2Q08AD1 1489 aa15.45■□□□□ 0.06
CCDC88A-201ENST00000263630 BRAPQ7Z569 592 aa15.45■□□□□ 0.06
CCDC88A-201ENST00000263630 SMARCA5O60264 1052 aaPredicted RBP15.45■□□□□ 0.06
CCDC88A-201ENST00000263630 MYCBPQ99417 103 aaPredicted RBP15.45■□□□□ 0.06
CCDC88A-201ENST00000263630 TYRO3Q06418 890 aa15.45■□□□□ 0.06
CCDC88A-201ENST00000263630 HFM1A2PYH4 1435 aa15.44■□□□□ 0.06
CCDC88A-201ENST00000263630 SYT10Q6XYQ8 523 aa15.44■□□□□ 0.06
CCDC88A-201ENST00000263630 LDHAL6AQ6ZMR3 332 aa15.44■□□□□ 0.06
CCDC88A-201ENST00000263630 BAG2O95816 211 aa15.44■□□□□ 0.06
CCDC88A-201ENST00000263630 RSAD2Q8WXG1 361 aa15.44■□□□□ 0.06
CCDC88A-201ENST00000263630 STX2P32856 288 aa15.44■□□□□ 0.06
CCDC88A-201ENST00000263630 ERBINQ96RT1 1412 aa15.44■□□□□ 0.06
CCDC88A-201ENST00000263630 SERPINI2O75830 405 aa15.44■□□□□ 0.06
CCDC88A-201ENST00000263630 TMPOP42166 694 aaKnown RBP15.44■□□□□ 0.06
CCDC88A-201ENST00000263630 TEKT1Q969V4 418 aa15.44■□□□□ 0.06
CCDC88A-201ENST00000263630 NOC4LQ9BVI4 516 aaKnown RBP15.44■□□□□ 0.06
CCDC88A-201ENST00000263630 PTCD1O75127 700 aaKnown RBP15.44■□□□□ 0.06
CCDC88A-201ENST00000263630 ANKRD50Q9ULJ7 1429 aa15.44■□□□□ 0.06
CCDC88A-201ENST00000263630 CCDC68Q9H2F9 335 aa15.44■□□□□ 0.06
CCDC88A-201ENST00000263630 RABEP2Q9H5N1 569 aa15.44■□□□□ 0.06
CCDC88A-201ENST00000263630 AMOTL2Q9Y2J4 779 aa15.44■□□□□ 0.06
CCDC88A-201ENST00000263630 EFCAB14O75071 495 aa15.43■□□□□ 0.06
CCDC88A-201ENST00000263630 YWHAEP62258 255 aaKnown RBP15.43■□□□□ 0.06
CCDC88A-201ENST00000263630 HOMER3Q9NSC5 361 aa15.43■□□□□ 0.06
CCDC88A-201ENST00000263630 NOD1Q9Y239 953 aa15.43■□□□□ 0.06
CCDC88A-201ENST00000263630 S100BP04271 92 aaPredicted RBP15.43■□□□□ 0.06
CCDC88A-201ENST00000263630 SLC9C1Q4G0N8 1177 aa15.43■□□□□ 0.06
CCDC88A-201ENST00000263630 EFHD1Q9BUP0 239 aa15.43■□□□□ 0.06
CCDC88A-201ENST00000263630 GABPB1Q06547 395 aaPredicted RBP15.43■□□□□ 0.06
CCDC88A-201ENST00000263630 CYB5RLQ6IPT4 315 aa15.43■□□□□ 0.06
CCDC88A-201ENST00000263630 TTLL3Q9Y4R7 772 aa15.43■□□□□ 0.06
CCDC88A-201ENST00000263630 ARHGEF9O43307 516 aa15.43■□□□□ 0.06
CCDC88A-201ENST00000263630 HAND2P61296 217 aa15.43■□□□□ 0.06
CCDC88A-201ENST00000263630 PRPF38AQ8NAV1 312 aaKnown RBP15.43■□□□□ 0.06
CCDC88A-201ENST00000263630 GRK7Q8WTQ7 553 aa15.43■□□□□ 0.06
CCDC88A-201ENST00000263630 POLE3Q9NRF9 147 aa15.43■□□□□ 0.06
CCDC88A-201ENST00000263630 TYW1Q9NV66 732 aaKnown RBP15.43■□□□□ 0.06
CCDC88A-201ENST00000263630 LMNB1P20700 586 aa15.43■□□□□ 0.06
CCDC88A-201ENST00000263630 PALM2Q8IXS6 379 aa15.43■□□□□ 0.06
CCDC88A-201ENST00000263630 POLR3CQ9BUI4 534 aaPredicted RBP15.43■□□□□ 0.06
CCDC88A-201ENST00000263630 TBC1D2Q9BYX2 928 aa15.43■□□□□ 0.06
CCDC88A-201ENST00000263630 OATP04181 439 aa15.43■□□□□ 0.06
CCDC88A-201ENST00000263630 PLCD1P51178 756 aa15.43■□□□□ 0.06
CCDC88A-201ENST00000263630 HAUS3Q68CZ6 603 aa15.43■□□□□ 0.06
CCDC88A-201ENST00000263630 KLHDC4Q8TBB5 520 aa15.43■□□□□ 0.06
CCDC88A-201ENST00000263630 RGS16O15492 202 aaPredicted RBP15.43■□□□□ 0.06
CCDC88A-201ENST00000263630 FLOT1O75955 427 aa15.43■□□□□ 0.06
CCDC88A-201ENST00000263630 DNAJC25Q9H1X3 360 aa15.43■□□□□ 0.06
CCDC88A-201ENST00000263630 MARCKSP29966 332 aaPredicted RBP15.42■□□□□ 0.06
CCDC88A-201ENST00000263630 ATP6V1AP38606 617 aa15.42■□□□□ 0.06
CCDC88A-201ENST00000263630 TRIML1Q8N9V2 468 aa15.42■□□□□ 0.06
CCDC88A-201ENST00000263630 BMP2KLQ5H9B9 411 aa15.42■□□□□ 0.06
CCDC88A-201ENST00000263630 ZNF804AQ7Z570 1209 aa15.42■□□□□ 0.06
CCDC88A-201ENST00000263630 IQCDQ96DY2 449 aa15.42■□□□□ 0.06
CCDC88A-201ENST00000263630 COPG1Q9Y678 874 aaKnown RBP15.42■□□□□ 0.06
CCDC88A-201ENST00000263630 GNGT2O14610 69 aa15.42■□□□□ 0.06
CCDC88A-201ENST00000263630 DEUP1Q05D60 604 aa15.42■□□□□ 0.06
CCDC88A-201ENST00000263630 CCDC105Q8IYK2 499 aa15.42■□□□□ 0.06
CCDC88A-201ENST00000263630 NUCKS1Q9H1E3 243 aaKnown RBP15.42■□□□□ 0.06
CCDC88A-201ENST00000263630 SH2D4AQ9H788 454 aa15.42■□□□□ 0.06
CCDC88A-201ENST00000263630 ELP1O95163 1332 aa15.42■□□□□ 0.06
CCDC88A-201ENST00000263630 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.42■□□□□ 0.06
CCDC88A-201ENST00000263630 TRIM55Q9BYV6 548 aa15.42■□□□□ 0.06
CCDC88A-201ENST00000263630 GLT8D2Q9H1C3 349 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms