RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 PHLDA1Q8WV24 401 aaPredicted RBP6.5□□□□□ -1.37
LIMCH1-209ENST00000509277 MORN3Q6PF18 240 aaPredicted RBP6.5□□□□□ -1.37
LIMCH1-209ENST00000509277 NDUFA7O95182 113 aa6.49□□□□□ -1.37
LIMCH1-209ENST00000509277 ZNF80P51504 273 aaPredicted RBP6.49□□□□□ -1.37
LIMCH1-209ENST00000509277 LAGE3Q14657 143 aa6.49□□□□□ -1.37
LIMCH1-209ENST00000509277 TMEM61Q8N0U2 210 aa6.49□□□□□ -1.37
LIMCH1-209ENST00000509277 TRRAPQ9Y4A5 3859 aa6.49□□□□□ -1.37
LIMCH1-209ENST00000509277 LINC00694P0DN24 101 aa6.49□□□□□ -1.37
LIMCH1-209ENST00000509277 GP9P14770 177 aa6.49□□□□□ -1.37
LIMCH1-209ENST00000509277 LGALS3P17931 250 aaKnown RBP6.49□□□□□ -1.37
LIMCH1-209ENST00000509277 GFRA4Q9GZZ7 299 aa6.49□□□□□ -1.37
LIMCH1-209ENST00000509277 C16orf95Q9H693 158 aa6.49□□□□□ -1.37
LIMCH1-209ENST00000509277 NXT2Q9NPJ8 142 aaKnown RBP6.49□□□□□ -1.37
LIMCH1-209ENST00000509277 CT83Q5H943 113 aa6.49□□□□□ -1.37
LIMCH1-209ENST00000509277 APRG1Q8IVJ8 170 aa6.49□□□□□ -1.37
LIMCH1-209ENST00000509277 IGHV3OR16-12A0A075B7B8 117 aa6.48□□□□□ -1.37
LIMCH1-209ENST00000509277 PRB2P02812 416 aaPredicted RBP6.48□□□□□ -1.37
LIMCH1-209ENST00000509277 CD7P09564 240 aa6.48□□□□□ -1.37
LIMCH1-209ENST00000509277 PKD1L1Q8TDX9 2849 aa6.48□□□□□ -1.37
LIMCH1-209ENST00000509277 DEFB131AP59861 70 aa6.48□□□□□ -1.37
LIMCH1-209ENST00000509277 GPHB5Q86YW7 130 aa6.48□□□□□ -1.37
LIMCH1-209ENST00000509277 RPL39LQ96EH5 51 aaKnown RBP6.48□□□□□ -1.37
LIMCH1-209ENST00000509277 WFDC10AQ9H1F0 79 aa6.48□□□□□ -1.37
LIMCH1-209ENST00000509277 TRGV11A0A075B6L2 103 aa6.48□□□□□ -1.37
LIMCH1-209ENST00000509277 Q8N1Y9 231 aa6.48□□□□□ -1.37
LIMCH1-209ENST00000509277 PRO0461Q9UI25 63 aa6.48□□□□□ -1.37
LIMCH1-209ENST00000509277 SMAD5-AS1Q9Y6J3 95 aa6.48□□□□□ -1.37
LIMCH1-209ENST00000509277 TRBV19A0A075B6N1 114 aa6.47□□□□□ -1.37
LIMCH1-209ENST00000509277 KNCNA6PVL3 124 aa6.47□□□□□ -1.37
LIMCH1-209ENST00000509277 PRAC2D3DTV9 90 aa6.47□□□□□ -1.37
LIMCH1-209ENST00000509277 OXLD1Q5BKU9 147 aa6.47□□□□□ -1.37
LIMCH1-209ENST00000509277 RNASE13Q5GAN3 156 aaKnown RBP6.47□□□□□ -1.37
LIMCH1-209ENST00000509277 ZNF625Q96I27 306 aaPredicted RBP6.47□□□□□ -1.37
LIMCH1-209ENST00000509277 MDFIQ99750 246 aa6.47□□□□□ -1.37
LIMCH1-209ENST00000509277 TMEM89A2RUT3 159 aa6.47□□□□□ -1.37
LIMCH1-209ENST00000509277 A4D1N5 150 aa6.47□□□□□ -1.37
LIMCH1-209ENST00000509277 NHLRC4P0CG21 123 aaPredicted RBP6.47□□□□□ -1.37
LIMCH1-209ENST00000509277 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.47□□□□□ -1.37
LIMCH1-209ENST00000509277 LINC00477Q96M19 166 aa6.47□□□□□ -1.37
LIMCH1-209ENST00000509277 F8VRH5 84 aa6.46□□□□□ -1.38
LIMCH1-209ENST00000509277 RPL35AP18077 110 aaKnown RBP6.46□□□□□ -1.38
LIMCH1-209ENST00000509277 ASIPP42127 132 aa6.46□□□□□ -1.38
LIMCH1-209ENST00000509277 C2orf66Q6UXQ4 117 aa6.46□□□□□ -1.38
LIMCH1-209ENST00000509277 NDUFA11Q86Y39 141 aa6.46□□□□□ -1.38
LIMCH1-209ENST00000509277 DAND5Q8N907 189 aa6.46□□□□□ -1.38
LIMCH1-209ENST00000509277 CLEC2BQ92478 149 aa6.46□□□□□ -1.38
LIMCH1-209ENST00000509277 FAM110AQ9BQ89 295 aa6.46□□□□□ -1.38
LIMCH1-209ENST00000509277 OPRPNQ99935 248 aaPredicted RBP6.46□□□□□ -1.38
LIMCH1-209ENST00000509277 PRO1854Q9UHT4 67 aa6.46□□□□□ -1.38
LIMCH1-209ENST00000509277 PHLDA3Q9Y5J5 127 aa6.46□□□□□ -1.38
LIMCH1-209ENST00000509277 IGLV2-11P01706 119 aa6.45□□□□□ -1.38
LIMCH1-209ENST00000509277 SNRPD3P62318 126 aaKnown RBP6.45□□□□□ -1.38
LIMCH1-209ENST00000509277 HIGD1BQ9P298 99 aa6.45□□□□□ -1.38
LIMCH1-209ENST00000509277 A0A087WX48 190 aa6.45□□□□□ -1.38
LIMCH1-209ENST00000509277 RBAKDNA6NC62 111 aa6.45□□□□□ -1.38
LIMCH1-209ENST00000509277 PLNP26678 52 aa6.45□□□□□ -1.38
LIMCH1-209ENST00000509277 RPL39P62891 51 aaKnown RBP6.45□□□□□ -1.38
LIMCH1-209ENST00000509277 PRR25Q96S07 402 aa6.45□□□□□ -1.38
LIMCH1-209ENST00000509277 A0A087WWL8 130 aa6.45□□□□□ -1.38
LIMCH1-209ENST00000509277 H3BMM0 161 aa6.45□□□□□ -1.38
LIMCH1-209ENST00000509277 MRPS12O15235 138 aaKnown RBP6.45□□□□□ -1.38
LIMCH1-209ENST00000509277 UBE2WQ96B02 151 aa6.45□□□□□ -1.38
LIMCH1-209ENST00000509277 C20orf173Q96LM9 149 aa6.45□□□□□ -1.38
LIMCH1-209ENST00000509277 TRAV12-2A0A075B6T6 113 aa6.44□□□□□ -1.38
LIMCH1-209ENST00000509277 RHODO00212 210 aa6.44□□□□□ -1.38
LIMCH1-209ENST00000509277 DUSP14O95147 198 aaKnown RBP6.44□□□□□ -1.38
LIMCH1-209ENST00000509277 ZNF22P17026 224 aaPredicted RBP6.44□□□□□ -1.38
LIMCH1-209ENST00000509277 MYCNOSP40205 109 aa6.44□□□□□ -1.38
LIMCH1-209ENST00000509277 OR10J6PQ8NGY7 276 aa6.44□□□□□ -1.38
LIMCH1-209ENST00000509277 TRAV13-1A0A0B4J241 112 aa6.44□□□□□ -1.38
LIMCH1-209ENST00000509277 ZNF493Q6ZR52 646 aa6.44□□□□□ -1.38
LIMCH1-209ENST00000509277 SPXQ9BT56 116 aa6.44□□□□□ -1.38
LIMCH1-209ENST00000509277 DEFB114Q30KQ6 69 aa6.43□□□□□ -1.38
LIMCH1-209ENST00000509277 CEMP1Q6PRD7 247 aaPredicted RBP6.43□□□□□ -1.38
LIMCH1-209ENST00000509277 RNF152Q8N8N0 203 aa6.43□□□□□ -1.38
LIMCH1-209ENST00000509277 TRBV7-3A0A075B6L6 115 aa6.43□□□□□ -1.38
LIMCH1-209ENST00000509277 SPINK13Q1W4C9 94 aa6.43□□□□□ -1.38
LIMCH1-209ENST00000509277 LINC00482Q8N8I6 264 aa6.43□□□□□ -1.38
LIMCH1-209ENST00000509277 TP53TG1Q9Y2A0 90 aa6.43□□□□□ -1.38
LIMCH1-209ENST00000509277 CFC1BP0CG36 223 aa6.42□□□□□ -1.38
LIMCH1-209ENST00000509277 CFC1P0CG37 223 aa6.42□□□□□ -1.38
LIMCH1-209ENST00000509277 ZNF580Q9UK33 172 aa6.42□□□□□ -1.38
LIMCH1-209ENST00000509277 C11orf86A6NJI1 115 aa6.42□□□□□ -1.38
LIMCH1-209ENST00000509277 RNASE4P34096 147 aaKnown RBP6.42□□□□□ -1.38
LIMCH1-209ENST00000509277 Q8N8P6 123 aa6.42□□□□□ -1.38
LIMCH1-209ENST00000509277 SLC50A1Q9BRV3 221 aa6.42□□□□□ -1.38
LIMCH1-209ENST00000509277 TNFRSF18Q9Y5U5 241 aa6.42□□□□□ -1.38
LIMCH1-209ENST00000509277 K7EMT4 169 aa6.42□□□□□ -1.38
LIMCH1-209ENST00000509277 GAGE2AQ6NT46 116 aa6.42□□□□□ -1.38
LIMCH1-209ENST00000509277 TMEM14CQ9P0S9 112 aa6.42□□□□□ -1.38
LIMCH1-209ENST00000509277 IGHV3-73A0A0B4J1V6 119 aa6.41□□□□□ -1.38
LIMCH1-209ENST00000509277 COX6CP09669 75 aa6.41□□□□□ -1.38
LIMCH1-209ENST00000509277 MUSTN1Q8IVN3 82 aa6.41□□□□□ -1.38
LIMCH1-209ENST00000509277 XCL2Q9UBD3 114 aa6.41□□□□□ -1.38
LIMCH1-209ENST00000509277 hADV29S1A0JD25 119 aa6.41□□□□□ -1.38
LIMCH1-209ENST00000509277 HERVK_113P63121 156 aa6.41□□□□□ -1.38
LIMCH1-209ENST00000509277 LINC01620Q4KN68 170 aa6.41□□□□□ -1.38
LIMCH1-209ENST00000509277 HRCT1Q6UXD1 115 aa6.41□□□□□ -1.38
LIMCH1-209ENST00000509277 STHQ8IWL8 128 aa6.41□□□□□ -1.38
LIMCH1-209ENST00000509277 GATD1Q8NB37 220 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms