RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.75□□□□□ -1.97
SYNE1-201ENST00000341594 TRAV13-2A0A0B4J235 113 aa2.75□□□□□ -1.97
SYNE1-201ENST00000341594 RSPO1Q2MKA7 263 aaPredicted RBP2.75□□□□□ -1.97
SYNE1-201ENST00000341594 JMJD7-PLA2G4BH0Y9G9 81 aa2.75□□□□□ -1.97
SYNE1-201ENST00000341594 TRBV12-3P01733 135 aa2.75□□□□□ -1.97
SYNE1-201ENST00000341594 FAM216BQ8N7L0 139 aa2.75□□□□□ -1.97
SYNE1-201ENST00000341594 NDUFA4L2Q9NRX3 87 aa2.75□□□□□ -1.97
SYNE1-201ENST00000341594 AGPAT4-IT1Q9H0P7 198 aa2.74□□□□□ -1.97
SYNE1-201ENST00000341594 MDFICQ9P1T7 246 aa2.74□□□□□ -1.97
SYNE1-201ENST00000341594 PYGO1Q9Y3Y4 419 aa2.74□□□□□ -1.97
SYNE1-201ENST00000341594 SRRM5B3KS81 715 aa2.74□□□□□ -1.97
SYNE1-201ENST00000341594 FLNAP21333 2647 aaKnown RBP2.74□□□□□ -1.97
SYNE1-201ENST00000341594 MRGPRG-AS1Q2M3A8 158 aa2.74□□□□□ -1.97
SYNE1-201ENST00000341594 LOXP28300 417 aaPredicted RBP2.74□□□□□ -1.97
SYNE1-201ENST00000341594 ITLN2Q8WWU7 325 aaPredicted RBP2.74□□□□□ -1.97
SYNE1-201ENST00000341594 TIMM21Q9BVV7 248 aa2.74□□□□□ -1.97
SYNE1-201ENST00000341594 A0A0C4DFX4 3053 aa2.74□□□□□ -1.97
SYNE1-201ENST00000341594 A0A0G2JQZ4 141 aa2.74□□□□□ -1.97
SYNE1-201ENST00000341594 TRBV10-2A0A0K0K1G8 114 aa2.74□□□□□ -1.97
SYNE1-201ENST00000341594 A0A1W2PNN7 141 aa2.74□□□□□ -1.97
SYNE1-201ENST00000341594 ZNF580Q9UK33 172 aa2.74□□□□□ -1.97
SYNE1-201ENST00000341594 CRYGDP07320 174 aa2.74□□□□□ -1.97
SYNE1-201ENST00000341594 BRD3OSQ6XYD6 125 aa2.74□□□□□ -1.97
SYNE1-201ENST00000341594 IGKV1-6A0A0C4DH72 117 aa2.74□□□□□ -1.97
SYNE1-201ENST00000341594 FAM167A-AS1Q96KT0 104 aa2.74□□□□□ -1.97
SYNE1-201ENST00000341594 H3BS24 57 aa2.74□□□□□ -1.97
SYNE1-201ENST00000341594 KIR2DL5BQ8NHK3 375 aa2.74□□□□□ -1.97
SYNE1-201ENST00000341594 C1orf229Q6ZS94 237 aaPredicted RBP2.74□□□□□ -1.97
SYNE1-201ENST00000341594 Q6ZT83 130 aa2.74□□□□□ -1.97
SYNE1-201ENST00000341594 PRIMA1Q86XR5 153 aa2.74□□□□□ -1.97
SYNE1-201ENST00000341594 Q8N976 141 aa2.74□□□□□ -1.97
SYNE1-201ENST00000341594 LGALS9O00182 355 aa2.74□□□□□ -1.97
SYNE1-201ENST00000341594 CGB3P0DN86 165 aa2.74□□□□□ -1.97
SYNE1-201ENST00000341594 CGB7P0DN87 165 aa2.74□□□□□ -1.97
SYNE1-201ENST00000341594 ODF3Q96PU9 254 aa2.74□□□□□ -1.97
SYNE1-201ENST00000341594 ORMDL1Q9P0S3 153 aa2.74□□□□□ -1.97
SYNE1-201ENST00000341594 C5orf38Q86SI9 138 aa2.74□□□□□ -1.97
SYNE1-201ENST00000341594 NTN3O00634 580 aaPredicted RBP2.73□□□□□ -1.97
SYNE1-201ENST00000341594 STAB2Q8WWQ8 2551 aa2.73□□□□□ -1.97
SYNE1-201ENST00000341594 ZNF876PQ49A33 203 aa2.73□□□□□ -1.97
SYNE1-201ENST00000341594 C2orf91Q6ZV80 131 aa2.73□□□□□ -1.97
SYNE1-201ENST00000341594 RPL39LQ96EH5 51 aaKnown RBP2.73□□□□□ -1.97
SYNE1-201ENST00000341594 G3V318 75 aa2.73□□□□□ -1.97
SYNE1-201ENST00000341594 CFAP126Q5VTH2 177 aa2.73□□□□□ -1.97
SYNE1-201ENST00000341594 TMEM256-PLSCR3K7ERE1 68 aa2.73□□□□□ -1.97
SYNE1-201ENST00000341594 C21orf62Q9NYP8 219 aa2.73□□□□□ -1.97
SYNE1-201ENST00000341594 MRPL51Q4U2R6 128 aaKnown RBP2.73□□□□□ -1.97
SYNE1-201ENST00000341594 SOSTDC1Q6X4U4 206 aa2.73□□□□□ -1.97
SYNE1-201ENST00000341594 H7C423 109 aa2.73□□□□□ -1.97
SYNE1-201ENST00000341594 LHBP01229 141 aa2.73□□□□□ -1.97
SYNE1-201ENST00000341594 SHANK2-AS3Q9BTD1 123 aa2.73□□□□□ -1.97
SYNE1-201ENST00000341594 MXRA5Q9NR99 2828 aa2.73□□□□□ -1.97
SYNE1-201ENST00000341594 E7EUB6 86 aa2.73□□□□□ -1.97
SYNE1-201ENST00000341594 IGHV4-61A0A0C4DH41 118 aa2.73□□□□□ -1.97
SYNE1-201ENST00000341594 ARMS2P0C7Q2 107 aa2.73□□□□□ -1.97
SYNE1-201ENST00000341594 RASL10AQ92737 203 aa2.73□□□□□ -1.97
SYNE1-201ENST00000341594 TRGV5A0A0B4J1U4 118 aa2.73□□□□□ -1.97
SYNE1-201ENST00000341594 IGHV1-69P01742 117 aa2.73□□□□□ -1.97
SYNE1-201ENST00000341594 Q9H3A6 140 aa2.73□□□□□ -1.97
SYNE1-201ENST00000341594 TCL1BO95988 128 aa2.72□□□□□ -1.97
SYNE1-201ENST00000341594 FXYD2P54710 66 aa2.72□□□□□ -1.97
SYNE1-201ENST00000341594 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.72□□□□□ -1.97
SYNE1-201ENST00000341594 A0A087WZ39 114 aa2.72□□□□□ -1.97
SYNE1-201ENST00000341594 IGHV1-58A0A0C4DH39 117 aa2.72□□□□□ -1.97
SYNE1-201ENST00000341594 IGKV2-29A2NJV5 120 aaPredicted RBP2.72□□□□□ -1.97
SYNE1-201ENST00000341594 C19orf84I3L1E1 186 aa2.72□□□□□ -1.97
SYNE1-201ENST00000341594 PLAC8L1A1L4L8 177 aa2.72□□□□□ -1.97
SYNE1-201ENST00000341594 TRAV4A0A0B4J268 109 aa2.72□□□□□ -1.97
SYNE1-201ENST00000341594 A0A0J9YY99 117 aa2.72□□□□□ -1.97
SYNE1-201ENST00000341594 SDIM1Q6ZPB5 146 aa2.72□□□□□ -1.97
SYNE1-201ENST00000341594 C14orf132Q9NPU4 83 aa2.72□□□□□ -1.97
SYNE1-201ENST00000341594 H3BUA1 57 aa2.72□□□□□ -1.97
SYNE1-201ENST00000341594 CD59P13987 128 aa2.72□□□□□ -1.97
SYNE1-201ENST00000341594 UPK3BQ9BT76 320 aa2.72□□□□□ -1.97
SYNE1-201ENST00000341594 TRBV7-1A0A0A6YYK4 115 aa2.72□□□□□ -1.97
SYNE1-201ENST00000341594 IGKV1-39P01597 117 aa2.72□□□□□ -1.97
SYNE1-201ENST00000341594 IGKV1D-39P04432 117 aa2.72□□□□□ -1.97
SYNE1-201ENST00000341594 CD28P10747 220 aa2.72□□□□□ -1.97
SYNE1-201ENST00000341594 ZNF80P51504 273 aaPredicted RBP2.72□□□□□ -1.97
SYNE1-201ENST00000341594 C9orf85Q96MD7 179 aa2.72□□□□□ -1.97
SYNE1-201ENST00000341594 IGHV1-8P0DP01 117 aa2.72□□□□□ -1.97
SYNE1-201ENST00000341594 RPL18AQ02543 176 aaKnown RBP2.72□□□□□ -1.97
SYNE1-201ENST00000341594 MINOS1Q5TGZ0 78 aa2.72□□□□□ -1.97
SYNE1-201ENST00000341594 USMG5Q96IX5 58 aa2.72□□□□□ -1.97
SYNE1-201ENST00000341594 FGF23Q9GZV9 251 aaPredicted RBP2.72□□□□□ -1.97
SYNE1-201ENST00000341594 MINOS1-NBL1R4GNA1 71 aa2.72□□□□□ -1.97
SYNE1-201ENST00000341594 A0A0J9YXV3 536 aa2.72□□□□□ -1.97
SYNE1-201ENST00000341594 SAA2P0DJI9 122 aaPredicted RBP2.72□□□□□ -1.97
SYNE1-201ENST00000341594 IGF2BP2-AS1Q96M15 143 aa2.72□□□□□ -1.97
SYNE1-201ENST00000341594 CRIPTQ9P021 101 aa2.72□□□□□ -1.97
SYNE1-201ENST00000341594 BLCAPP62952 87 aa2.71□□□□□ -1.97
SYNE1-201ENST00000341594 C10orf99Q6UWK7 81 aa2.71□□□□□ -1.97
SYNE1-201ENST00000341594 MRPL36Q9P0J6 103 aaKnown RBP2.71□□□□□ -1.97
SYNE1-201ENST00000341594 IGHV4-38-2P0DP08 117 aa2.71□□□□□ -1.97
SYNE1-201ENST00000341594 DEFB130BP0DP73 79 aa2.71□□□□□ -1.97
SYNE1-201ENST00000341594 DEFB130AP0DP74 79 aa2.71□□□□□ -1.97
SYNE1-201ENST00000341594 IGLV10-54A0A075B6I4 117 aa2.71□□□□□ -1.98
SYNE1-201ENST00000341594 C11orf86A6NJI1 115 aa2.71□□□□□ -1.98
SYNE1-201ENST00000341594 DYNAPQ8N1N2 210 aa2.71□□□□□ -1.98
SYNE1-201ENST00000341594 TOMM6Q96B49 74 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms