RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 C1QBP02746 253 aa7.11□□□□□ -1.27
VPS39-208ENST00000564994 IGLC6P0CF74 106 aa7.11□□□□□ -1.27
VPS39-208ENST00000564994 MEF2BQ02080 365 aaPredicted RBP7.11□□□□□ -1.27
VPS39-208ENST00000564994 LINC01620Q4KN68 170 aa7.11□□□□□ -1.27
VPS39-208ENST00000564994 MPV17L2Q567V2 206 aa7.11□□□□□ -1.27
VPS39-208ENST00000564994 EIF5AL1Q6IS14 154 aaKnown RBP7.11□□□□□ -1.27
VPS39-208ENST00000564994 ATRAIDQ6UW56 229 aa7.11□□□□□ -1.27
VPS39-208ENST00000564994 Q6ZSA8 131 aa7.11□□□□□ -1.27
VPS39-208ENST00000564994 NTM-AS1Q6ZSK4 140 aa7.11□□□□□ -1.27
VPS39-208ENST00000564994 RMI2Q96E14 147 aa7.11□□□□□ -1.27
VPS39-208ENST00000564994 COX11Q9Y6N1 276 aa7.11□□□□□ -1.27
VPS39-208ENST00000564994 TMEM262E9PQX1 116 aa7.1□□□□□ -1.27
VPS39-208ENST00000564994 F5H697 171 aa7.1□□□□□ -1.27
VPS39-208ENST00000564994 GNG4P50150 75 aa7.1□□□□□ -1.27
VPS39-208ENST00000564994 ELOBQ15370 118 aa7.1□□□□□ -1.27
VPS39-208ENST00000564994 ENHOQ6UWT2 76 aa7.1□□□□□ -1.27
VPS39-208ENST00000564994 FER1L6-AS1Q8NA97 138 aa7.1□□□□□ -1.27
VPS39-208ENST00000564994 OR2D3Q8NGH3 330 aa7.1□□□□□ -1.27
VPS39-208ENST00000564994 AP1S3Q96PC3 154 aa7.1□□□□□ -1.27
VPS39-208ENST00000564994 TPPP3Q9BW30 176 aa7.1□□□□□ -1.27
VPS39-208ENST00000564994 VAX2Q9UIW0 290 aa7.1□□□□□ -1.27
VPS39-208ENST00000564994 FAM229AH3BQW9 127 aa7.09□□□□□ -1.27
VPS39-208ENST00000564994 TEX46H3BTG2 121 aa7.09□□□□□ -1.27
VPS39-208ENST00000564994 PDE6DO43924 150 aa7.09□□□□□ -1.27
VPS39-208ENST00000564994 BCL2P10415 239 aa7.09□□□□□ -1.27
VPS39-208ENST00000564994 KCNIP4Q6PIL6 250 aa7.09□□□□□ -1.27
VPS39-208ENST00000564994 SLC51BQ86UW2 128 aa7.09□□□□□ -1.27
VPS39-208ENST00000564994 C15orf54Q8N8G6 183 aa7.09□□□□□ -1.27
VPS39-208ENST00000564994 Q8N976 141 aa7.09□□□□□ -1.27
VPS39-208ENST00000564994 SMIM12Q96EX1 92 aa7.09□□□□□ -1.27
VPS39-208ENST00000564994 MED9Q9NWA0 146 aa7.09□□□□□ -1.27
VPS39-208ENST00000564994 M0QY20 66 aa7.08□□□□□ -1.28
VPS39-208ENST00000564994 SMIM17P0DL12 118 aa7.08□□□□□ -1.28
VPS39-208ENST00000564994 RPS20P60866 119 aaKnown RBP7.08□□□□□ -1.28
VPS39-208ENST00000564994 Q0VG73 95 aa7.08□□□□□ -1.28
VPS39-208ENST00000564994 SUMO4Q6EEV6 95 aa7.08□□□□□ -1.28
VPS39-208ENST00000564994 Q6ZNX1 250 aa7.08□□□□□ -1.28
VPS39-208ENST00000564994 DAZAP1Q96EP5 407 aaKnown RBP7.08□□□□□ -1.28
VPS39-208ENST00000564994 CHCHD5Q9BSY4 110 aa7.08□□□□□ -1.28
VPS39-208ENST00000564994 IFNA1P01562 189 aa7.07□□□□□ -1.28
VPS39-208ENST00000564994 P01737 135 aa7.07□□□□□ -1.28
VPS39-208ENST00000564994 ANGP03950 147 aaKnown RBP7.07□□□□□ -1.28
VPS39-208ENST00000564994 MGPP08493 103 aa7.07□□□□□ -1.28
VPS39-208ENST00000564994 CACNG7P62955 275 aa7.07□□□□□ -1.28
VPS39-208ENST00000564994 LRP1Q07954 4544 aaKnown RBP7.07□□□□□ -1.28
VPS39-208ENST00000564994 CRPP02741 224 aa7.06□□□□□ -1.28
VPS39-208ENST00000564994 RBX1P62877 108 aa7.06□□□□□ -1.28
VPS39-208ENST00000564994 GAGE6Q13070 117 aa7.06□□□□□ -1.28
VPS39-208ENST00000564994 TMEM97Q5BJF2 176 aa7.06□□□□□ -1.28
VPS39-208ENST00000564994 KRTAP26-1Q6PEX3 210 aa7.06□□□□□ -1.28
VPS39-208ENST00000564994 LYZL1Q6UWQ5 148 aa7.06□□□□□ -1.28
VPS39-208ENST00000564994 C9orf62Q8N4C0 152 aa7.06□□□□□ -1.28
VPS39-208ENST00000564994 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.06□□□□□ -1.28
VPS39-208ENST00000564994 NUDT10Q8NFP7 164 aa7.06□□□□□ -1.28
VPS39-208ENST00000564994 NUDT11Q96G61 164 aa7.06□□□□□ -1.28
VPS39-208ENST00000564994 C1orf43Q9BWL3 253 aa7.06□□□□□ -1.28
VPS39-208ENST00000564994 TRBV25-1A0A075B6N4 114 aa7.05□□□□□ -1.28
VPS39-208ENST00000564994 F2Z2F3 143 aa7.05□□□□□ -1.28
VPS39-208ENST00000564994 K7EN84 100 aa7.05□□□□□ -1.28
VPS39-208ENST00000564994 NTF3P20783 257 aa7.05□□□□□ -1.28
VPS39-208ENST00000564994 IQCJQ1A5X6 159 aa7.05□□□□□ -1.28
VPS39-208ENST00000564994 CLPSL2Q6UWE3 100 aa7.05□□□□□ -1.28
VPS39-208ENST00000564994 SCXQ7RTU7 201 aa7.05□□□□□ -1.28
VPS39-208ENST00000564994 PRR34Q9NV39 138 aa7.05□□□□□ -1.28
VPS39-208ENST00000564994 FAT3Q8TDW7 4589 aa7.05□□□□□ -1.28
VPS39-208ENST00000564994 XKRY2A2RUG3 117 aa7.04□□□□□ -1.28
VPS39-208ENST00000564994 H7C1H1 209 aa7.04□□□□□ -1.28
VPS39-208ENST00000564994 CTRLP40313 264 aa7.04□□□□□ -1.28
VPS39-208ENST00000564994 NKX2-5P52952 324 aaPredicted RBP7.04□□□□□ -1.28
VPS39-208ENST00000564994 PKIAP61925 76 aa7.04□□□□□ -1.28
VPS39-208ENST00000564994 MIAQ16674 131 aa7.04□□□□□ -1.28
VPS39-208ENST00000564994 RASL11AQ6T310 242 aa7.04□□□□□ -1.28
VPS39-208ENST00000564994 LINC00528Q8N1L1 170 aa7.04□□□□□ -1.28
VPS39-208ENST00000564994 LINC00269Q8N2A0 174 aa7.04□□□□□ -1.28
VPS39-208ENST00000564994 OCC1Q8TAD7 63 aa7.04□□□□□ -1.28
VPS39-208ENST00000564994 RNASE7Q9H1E1 156 aaKnown RBP7.04□□□□□ -1.28
VPS39-208ENST00000564994 DPH3P1Q9H4G8 78 aa7.04□□□□□ -1.28
VPS39-208ENST00000564994 BIN3Q9NQY0 253 aa7.04□□□□□ -1.28
VPS39-208ENST00000564994 hCG_2014768A0A024R1R8 64 aa7.03□□□□□ -1.28
VPS39-208ENST00000564994 IGHV1-24A0A0C4DH33 117 aa7.03□□□□□ -1.28
VPS39-208ENST00000564994 USP17L23D6RBM5 183 aa7.03□□□□□ -1.28
VPS39-208ENST00000564994 HLA-DQA1P01909 254 aa7.03□□□□□ -1.28
VPS39-208ENST00000564994 TRGC1P0CF51 173 aa7.03□□□□□ -1.28
VPS39-208ENST00000564994 TAGLN2P37802 199 aaKnown RBP7.03□□□□□ -1.28
VPS39-208ENST00000564994 WDR73Q6P4I2 378 aa7.03□□□□□ -1.28
VPS39-208ENST00000564994 AKAP14Q86UN6 197 aa7.03□□□□□ -1.28
VPS39-208ENST00000564994 C20orf203Q8NBC4 194 aa7.03□□□□□ -1.28
VPS39-208ENST00000564994 DEFB104AQ8WTQ1 72 aa7.03□□□□□ -1.28
VPS39-208ENST00000564994 CNFNQ9BYD5 112 aa7.03□□□□□ -1.28
VPS39-208ENST00000564994 PRSS1P07477 247 aa7.02□□□□□ -1.29
VPS39-208ENST00000564994 C14orf177Q52M58 125 aa7.02□□□□□ -1.29
VPS39-208ENST00000564994 ALKAL2Q6UX46 152 aa7.02□□□□□ -1.29
VPS39-208ENST00000564994 CIRBP-AS1Q8TBR5 109 aa7.02□□□□□ -1.29
VPS39-208ENST00000564994 GTSF1Q8WW33 167 aa7.02□□□□□ -1.29
VPS39-208ENST00000564994 CHAC1Q9BUX1 264 aa7.02□□□□□ -1.29
VPS39-208ENST00000564994 GFRA4Q9GZZ7 299 aa7.02□□□□□ -1.29
VPS39-208ENST00000564994 RPP21Q9H633 154 aaKnown RBP7.02□□□□□ -1.29
VPS39-208ENST00000564994 NIT2Q9NQR4 276 aa7.02□□□□□ -1.29
VPS39-208ENST00000564994 IGLV4-60A0A075B6I1 120 aa7.01□□□□□ -1.29
VPS39-208ENST00000564994 PLA2G1BP04054 148 aaKnown RBP7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms