RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 CD7P09564 240 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 LINC00869P0C866 280 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 LGALS3P17931 250 aaKnown RBP2.79□□□□□ -1.96
NUP88-213ENST00000576862 MPV17P39210 176 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 INSL3P51460 131 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 RBM11P57052 281 aaKnown RBP2.79□□□□□ -1.96
NUP88-213ENST00000576862 CCL20P78556 96 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 PIGYQ3MUY2 71 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 CLLU1Q5K131 121 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 Q5W150 140 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 MORN3Q6PF18 240 aaPredicted RBP2.79□□□□□ -1.96
NUP88-213ENST00000576862 LCN15Q6UWW0 184 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 SCXQ7RTU7 201 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 LINC00305Q7Z4B0 112 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 C6orf201Q7Z4U5 140 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 RPP25LQ8N5L8 163 aaKnown RBP2.79□□□□□ -1.96
NUP88-213ENST00000576862 TTC9CQ8N5M4 171 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 SLC25A29Q8N8R3 303 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 RBPMSQ93062 196 aaKnown RBP2.79□□□□□ -1.96
NUP88-213ENST00000576862 RMI2Q96E14 147 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 S100A13Q99584 98 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 GINS4Q9BRT9 223 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 DERL1Q9BUN8 251 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 CHAC1Q9BUX1 264 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 RPP21Q9H633 154 aaKnown RBP2.79□□□□□ -1.96
NUP88-213ENST00000576862 ASF1BQ9NVP2 202 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 ZNF222Q9UK12 451 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 ZNF706Q9Y5V0 76 aaPredicted RBP2.79□□□□□ -1.96
NUP88-213ENST00000576862 PRRC2CQ9Y520 2896 aaKnown RBP2.79□□□□□ -1.96
NUP88-213ENST00000576862 FRYQ5TBA9 3013 aa2.78□□□□□ -1.96
NUP88-213ENST00000576862 IGHV3OR15-7A0A075B7D8 119 aa2.78□□□□□ -1.96
NUP88-213ENST00000576862 IQCF6A8MYZ5 107 aa2.78□□□□□ -1.96
NUP88-213ENST00000576862 C9JCJ5 164 aa2.78□□□□□ -1.96
NUP88-213ENST00000576862 G3V3Q6 166 aa2.78□□□□□ -1.96
NUP88-213ENST00000576862 H3BMG7 143 aa2.78□□□□□ -1.96
NUP88-213ENST00000576862 PMP2P02689 132 aa2.78□□□□□ -1.96
NUP88-213ENST00000576862 IL5P05113 134 aa2.78□□□□□ -1.96
NUP88-213ENST00000576862 FAUP35544 74 aaKnown RBP2.78□□□□□ -1.96
NUP88-213ENST00000576862 ZNF80P51504 273 aaPredicted RBP2.78□□□□□ -1.96
NUP88-213ENST00000576862 S100A10P60903 97 aa2.78□□□□□ -1.96
NUP88-213ENST00000576862 TMEM258P61165 79 aa2.78□□□□□ -1.96
NUP88-213ENST00000576862 FGF12P61328 243 aa2.78□□□□□ -1.96
NUP88-213ENST00000576862 GPHB5Q86YW7 130 aa2.78□□□□□ -1.96
NUP88-213ENST00000576862 KLF14Q8TD94 323 aaPredicted RBP2.78□□□□□ -1.96
NUP88-213ENST00000576862 H1FXQ92522 213 aaKnown RBP2.78□□□□□ -1.96
NUP88-213ENST00000576862 MRPS24Q96EL2 167 aaKnown RBP2.78□□□□□ -1.96
NUP88-213ENST00000576862 DPH3Q96FX2 82 aa2.78□□□□□ -1.96
NUP88-213ENST00000576862 C18orf15Q96N68 181 aa2.78□□□□□ -1.96
NUP88-213ENST00000576862 CAMK2N2Q96S95 79 aa2.78□□□□□ -1.96
NUP88-213ENST00000576862 CA10Q9NS85 328 aa2.78□□□□□ -1.96
NUP88-213ENST00000576862 FUT9Q9Y231 359 aa2.78□□□□□ -1.96
NUP88-213ENST00000576862 MRPS16Q9Y3D3 137 aaKnown RBP2.78□□□□□ -1.96
NUP88-213ENST00000576862 ZNF407Q9C0G0 2248 aa2.78□□□□□ -1.96
NUP88-213ENST00000576862 FREM3P0C091 2139 aa2.78□□□□□ -1.96
NUP88-213ENST00000576862 WDFY3Q8IZQ1 3526 aa2.78□□□□□ -1.96
NUP88-213ENST00000576862 ZFYVE26Q68DK2 2539 aa2.78□□□□□ -1.96
NUP88-213ENST00000576862 ACACBO00763 2458 aa2.78□□□□□ -1.96
NUP88-213ENST00000576862 MGAQ8IWI9 3026 aa2.77□□□□□ -1.97
NUP88-213ENST00000576862 DOCK10Q96BY6 2186 aa2.77□□□□□ -1.97
NUP88-213ENST00000576862 MPDZO75970 2070 aa2.77□□□□□ -1.97
NUP88-213ENST00000576862 TRAV13-1A0A0B4J241 112 aa2.77□□□□□ -1.97
NUP88-213ENST00000576862 C7orf71A4D174 169 aa2.77□□□□□ -1.97
NUP88-213ENST00000576862 OR2T8A6NH00 312 aa2.77□□□□□ -1.97
NUP88-213ENST00000576862 SNRPGP15A8MWD9 76 aa2.77□□□□□ -1.97
NUP88-213ENST00000576862 A8MWV9 139 aa2.77□□□□□ -1.97
NUP88-213ENST00000576862 NDUFC2-KCTD14E9PQ53 114 aa2.77□□□□□ -1.97
NUP88-213ENST00000576862 INS-IGF2F8WCM5 200 aa2.77□□□□□ -1.97
NUP88-213ENST00000576862 SDCBPO00560 298 aaPredicted RBP2.77□□□□□ -1.97
NUP88-213ENST00000576862 NDUFB3O43676 98 aa2.77□□□□□ -1.97
NUP88-213ENST00000576862 ZNF73O43830 326 aaPredicted RBP2.77□□□□□ -1.97
NUP88-213ENST00000576862 SIX6O95475 246 aa2.77□□□□□ -1.97
NUP88-213ENST00000576862 NAPSAO96009 420 aa2.77□□□□□ -1.97
NUP88-213ENST00000576862 HIST1H2BOP23527 126 aa2.77□□□□□ -1.97
NUP88-213ENST00000576862 HIST1H2BBP33778 126 aa2.77□□□□□ -1.97
NUP88-213ENST00000576862 HIST1H2BDP58876 126 aa2.77□□□□□ -1.97
NUP88-213ENST00000576862 HIST1H2BCP62807 126 aa2.77□□□□□ -1.97
NUP88-213ENST00000576862 HIST2H2BEQ16778 126 aa2.77□□□□□ -1.97
NUP88-213ENST00000576862 Q5BKY6 102 aa2.77□□□□□ -1.97
NUP88-213ENST00000576862 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.77□□□□□ -1.97
NUP88-213ENST00000576862 AADACL3Q5VUY0 350 aa2.77□□□□□ -1.97
NUP88-213ENST00000576862 ZNF660Q6AZW8 331 aaPredicted RBP2.77□□□□□ -1.97
NUP88-213ENST00000576862 ZNF826PQ6ZT77 177 aa2.77□□□□□ -1.97
NUP88-213ENST00000576862 TEX29Q8N6K0 151 aa2.77□□□□□ -1.97
NUP88-213ENST00000576862 ZDHHC22Q8N966 263 aa2.77□□□□□ -1.97
NUP88-213ENST00000576862 ZNF431Q8TF32 576 aaPredicted RBP2.77□□□□□ -1.97
NUP88-213ENST00000576862 HIST1H2BHQ93079 126 aa2.77□□□□□ -1.97
NUP88-213ENST00000576862 HIST1H2BNQ99877 126 aa2.77□□□□□ -1.97
NUP88-213ENST00000576862 HIST1H2BMQ99879 126 aa2.77□□□□□ -1.97
NUP88-213ENST00000576862 ADAT1Q9BUB4 502 aaKnown RBP2.77□□□□□ -1.97
NUP88-213ENST00000576862 ZNF286AQ9HBT8 521 aa2.77□□□□□ -1.97
NUP88-213ENST00000576862 KLK5Q9Y337 293 aaPredicted RBP2.77□□□□□ -1.97
NUP88-213ENST00000576862 NOP16Q9Y3C1 178 aaKnown RBP2.77□□□□□ -1.97
NUP88-213ENST00000576862 TPRP12270 2363 aaKnown RBP2.76□□□□□ -1.97
NUP88-213ENST00000576862 RTTNQ86VV8 2226 aa2.76□□□□□ -1.97
NUP88-213ENST00000576862 NCKAP5O14513 1909 aa2.76□□□□□ -1.97
NUP88-213ENST00000576862 ITPR1Q14643 2758 aa2.76□□□□□ -1.97
NUP88-213ENST00000576862 CFAP46Q8IYW2 2715 aa2.76□□□□□ -1.97
NUP88-213ENST00000576862 IGLV3-9A0A075B6K5 115 aa2.76□□□□□ -1.97
NUP88-213ENST00000576862 IGKV1-6A0A0C4DH72 117 aa2.76□□□□□ -1.97
NUP88-213ENST00000576862 TRBV27A0A0K0K1C4 114 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms