RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 SDF2L1Q9HCN8 221 aa4.64□□□□□ -1.67
DEPDC4-201ENST00000299185 NAT8Q9UHE5 227 aa4.64□□□□□ -1.67
DEPDC4-201ENST00000299185 ZFP30Q9Y2G7 519 aa4.64□□□□□ -1.67
DEPDC4-201ENST00000299185 LENEPQ9Y5L5 61 aa4.64□□□□□ -1.67
DEPDC4-201ENST00000299185 TRBV7-9A0A0J9YWB2 115 aa4.63□□□□□ -1.67
DEPDC4-201ENST00000299185 TMEM189A5PLL7 270 aa4.63□□□□□ -1.67
DEPDC4-201ENST00000299185 IGHV3-53P01767 116 aa4.63□□□□□ -1.67
DEPDC4-201ENST00000299185 APOC3P02656 99 aa4.63□□□□□ -1.67
DEPDC4-201ENST00000299185 S100A9P06702 114 aaKnown RBP4.63□□□□□ -1.67
DEPDC4-201ENST00000299185 RNASE3P12724 160 aaKnown RBP4.63□□□□□ -1.67
DEPDC4-201ENST00000299185 NANOS2P60321 138 aaKnown RBP4.63□□□□□ -1.67
DEPDC4-201ENST00000299185 TMEM241Q24JQ0 296 aa4.63□□□□□ -1.67
DEPDC4-201ENST00000299185 RRN3P1Q2M238 152 aa4.63□□□□□ -1.67
DEPDC4-201ENST00000299185 ATRAIDQ6UW56 229 aa4.63□□□□□ -1.67
DEPDC4-201ENST00000299185 Q6ZTI0 123 aa4.63□□□□□ -1.67
DEPDC4-201ENST00000299185 COX8CQ7Z4L0 72 aa4.63□□□□□ -1.67
DEPDC4-201ENST00000299185 IL17DQ8TAD2 202 aa4.63□□□□□ -1.67
DEPDC4-201ENST00000299185 TPPP3Q9BW30 176 aa4.63□□□□□ -1.67
DEPDC4-201ENST00000299185 RPP21Q9H633 154 aaKnown RBP4.63□□□□□ -1.67
DEPDC4-201ENST00000299185 NOP10Q9NPE3 64 aaKnown RBP4.63□□□□□ -1.67
DEPDC4-201ENST00000299185 GAGE12BA1L429 117 aa4.62□□□□□ -1.67
DEPDC4-201ENST00000299185 FBLL1A6NHQ2 334 aaKnown RBP4.62□□□□□ -1.67
DEPDC4-201ENST00000299185 GATCO43716 136 aaKnown RBP4.62□□□□□ -1.67
DEPDC4-201ENST00000299185 GAGE7O76087 117 aa4.62□□□□□ -1.67
DEPDC4-201ENST00000299185 SNAPINO95295 136 aa4.62□□□□□ -1.67
DEPDC4-201ENST00000299185 P01737 135 aa4.62□□□□□ -1.67
DEPDC4-201ENST00000299185 GAGE12FP0CL80 117 aa4.62□□□□□ -1.67
DEPDC4-201ENST00000299185 GAGE12GP0CL81 117 aa4.62□□□□□ -1.67
DEPDC4-201ENST00000299185 GAGE12IP0CL82 117 aa4.62□□□□□ -1.67
DEPDC4-201ENST00000299185 HTN3P15516 51 aa4.62□□□□□ -1.67
DEPDC4-201ENST00000299185 ASIPP42127 132 aa4.62□□□□□ -1.67
DEPDC4-201ENST00000299185 ERVFC1-1P60608 527 aa4.62□□□□□ -1.67
DEPDC4-201ENST00000299185 ZNF415Q09FC8 603 aa4.62□□□□□ -1.67
DEPDC4-201ENST00000299185 RNF212Q495C1 297 aa4.62□□□□□ -1.67
DEPDC4-201ENST00000299185 FAM222AQ5U5X8 452 aa4.62□□□□□ -1.67
DEPDC4-201ENST00000299185 FAM159AQ6UWV7 190 aa4.62□□□□□ -1.67
DEPDC4-201ENST00000299185 SVBPQ8N300 66 aa4.62□□□□□ -1.67
DEPDC4-201ENST00000299185 OR10AG1Q8NH19 301 aa4.62□□□□□ -1.67
DEPDC4-201ENST00000299185 TMEM263Q8WUH6 116 aaKnown RBP4.62□□□□□ -1.67
DEPDC4-201ENST00000299185 GTSF1Q8WW33 167 aa4.62□□□□□ -1.67
DEPDC4-201ENST00000299185 C9orf85Q96MD7 179 aa4.62□□□□□ -1.67
DEPDC4-201ENST00000299185 PYGO2Q9BRQ0 406 aa4.62□□□□□ -1.67
DEPDC4-201ENST00000299185 JPT2Q9H910 190 aa4.62□□□□□ -1.67
DEPDC4-201ENST00000299185 U3KQK5 164 aa4.62□□□□□ -1.67
DEPDC4-201ENST00000299185 V9GYV3 84 aa4.62□□□□□ -1.67
DEPDC4-201ENST00000299185 EPPK1P58107 5090 aaKnown RBP4.62□□□□□ -1.67
DEPDC4-201ENST00000299185 TENM3Q9P273 2699 aa4.61□□□□□ -1.67
DEPDC4-201ENST00000299185 TRGV11A0A075B6L2 103 aa4.61□□□□□ -1.67
DEPDC4-201ENST00000299185 TRGV1A0A0A0MS02 117 aa4.61□□□□□ -1.67
DEPDC4-201ENST00000299185 IGHV3-73A0A0B4J1V6 119 aa4.61□□□□□ -1.67
DEPDC4-201ENST00000299185 FABP5P3A8MUU1 101 aa4.61□□□□□ -1.67
DEPDC4-201ENST00000299185 SPINK4O60575 86 aa4.61□□□□□ -1.67
DEPDC4-201ENST00000299185 SCO1O75880 301 aa4.61□□□□□ -1.67
DEPDC4-201ENST00000299185 ARMS2P0C7Q2 107 aa4.61□□□□□ -1.67
DEPDC4-201ENST00000299185 DEFB130BP0DP73 79 aa4.61□□□□□ -1.67
DEPDC4-201ENST00000299185 DEFB130AP0DP74 79 aa4.61□□□□□ -1.67
DEPDC4-201ENST00000299185 PNRC1Q12796 327 aaPredicted RBP4.61□□□□□ -1.67
DEPDC4-201ENST00000299185 IBA57Q5T440 356 aaKnown RBP4.61□□□□□ -1.67
DEPDC4-201ENST00000299185 TMEM256Q8N2U0 113 aa4.61□□□□□ -1.67
DEPDC4-201ENST00000299185 OR10G8Q8NGN5 311 aa4.61□□□□□ -1.67
DEPDC4-201ENST00000299185 DAZAP1Q96EP5 407 aaKnown RBP4.61□□□□□ -1.67
DEPDC4-201ENST00000299185 C16orf74Q96GX8 76 aa4.61□□□□□ -1.67
DEPDC4-201ENST00000299185 SFRP2Q96HF1 295 aa4.61□□□□□ -1.67
DEPDC4-201ENST00000299185 PGLYRP4Q96LB8 373 aa4.61□□□□□ -1.67
DEPDC4-201ENST00000299185 C20orf144Q9BQM9 153 aa4.61□□□□□ -1.67
DEPDC4-201ENST00000299185 ZMAT4Q9H898 229 aa4.61□□□□□ -1.67
DEPDC4-201ENST00000299185 TP53TG1Q9Y2A0 90 aa4.61□□□□□ -1.67
DEPDC4-201ENST00000299185 LY96Q9Y6Y9 160 aa4.61□□□□□ -1.67
DEPDC4-201ENST00000299185 M0R381 172 aa4.6□□□□□ -1.67
DEPDC4-201ENST00000299185 IGLC6P0CF74 106 aa4.6□□□□□ -1.67
DEPDC4-201ENST00000299185 MIFP14174 115 aa4.6□□□□□ -1.67
DEPDC4-201ENST00000299185 S100A4P26447 101 aaKnown RBP4.6□□□□□ -1.67
DEPDC4-201ENST00000299185 C12orf74Q32Q52 190 aa4.6□□□□□ -1.67
DEPDC4-201ENST00000299185 TDRG1Q3Y452 100 aa4.6□□□□□ -1.67
DEPDC4-201ENST00000299185 ZFAND6Q6FIF0 208 aa4.6□□□□□ -1.67
DEPDC4-201ENST00000299185 LYZL1Q6UWQ5 148 aa4.6□□□□□ -1.67
DEPDC4-201ENST00000299185 Q6ZTC4 211 aa4.6□□□□□ -1.67
DEPDC4-201ENST00000299185 FAM231DQ6ZW35 169 aa4.6□□□□□ -1.67
DEPDC4-201ENST00000299185 FER1L6-AS1Q8NA97 138 aa4.6□□□□□ -1.67
DEPDC4-201ENST00000299185 CLRN3Q8NCR9 226 aa4.6□□□□□ -1.67
DEPDC4-201ENST00000299185 NEU1Q99519 415 aa4.6□□□□□ -1.67
DEPDC4-201ENST00000299185 LINC00467Q9BRT7 94 aa4.6□□□□□ -1.67
DEPDC4-201ENST00000299185 SAMD10Q9BYL1 202 aa4.6□□□□□ -1.67
DEPDC4-201ENST00000299185 C11orf68Q9H3H3 251 aaKnown RBP4.6□□□□□ -1.67
DEPDC4-201ENST00000299185 EDA2RQ9HAV5 297 aa4.6□□□□□ -1.67
DEPDC4-201ENST00000299185 OSTCQ9NRP0 149 aa4.6□□□□□ -1.67
DEPDC4-201ENST00000299185 MSRB1Q9NZV6 116 aa4.6□□□□□ -1.67
DEPDC4-201ENST00000299185 DKK2Q9UBU2 259 aa4.6□□□□□ -1.67
DEPDC4-201ENST00000299185 A0A087WWC5 75 aa4.59□□□□□ -1.67
DEPDC4-201ENST00000299185 A0A087WWL8 130 aa4.59□□□□□ -1.67
DEPDC4-201ENST00000299185 C7orf77A4D0Y5 90 aa4.59□□□□□ -1.67
DEPDC4-201ENST00000299185 SNURFLB1AK76 121 aa4.59□□□□□ -1.67
DEPDC4-201ENST00000299185 CTRLP40313 264 aa4.59□□□□□ -1.67
DEPDC4-201ENST00000299185 FOXA3P55318 350 aaPredicted RBP4.59□□□□□ -1.67
DEPDC4-201ENST00000299185 MRPL54Q6P161 138 aaKnown RBP4.59□□□□□ -1.67
DEPDC4-201ENST00000299185 CBLN2Q8IUK8 224 aa4.59□□□□□ -1.67
DEPDC4-201ENST00000299185 POM121L12Q8N7R1 296 aa4.59□□□□□ -1.67
DEPDC4-201ENST00000299185 SMIM12Q96EX1 92 aa4.59□□□□□ -1.67
DEPDC4-201ENST00000299185 TMEM242Q9NWH2 141 aa4.59□□□□□ -1.67
DEPDC4-201ENST00000299185 MUC4Q99102 2169 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms