RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 GABARAPH6UMI1 98 aa2.82□□□□□ -1.96
NUP88-213ENST00000576862 I3L521 148 aa2.82□□□□□ -1.96
NUP88-213ENST00000576862 PGLYRP1O75594 196 aaPredicted RBP2.82□□□□□ -1.96
NUP88-213ENST00000576862 SCO1O75880 301 aa2.82□□□□□ -1.96
NUP88-213ENST00000576862 LTAP01374 205 aa2.82□□□□□ -1.96
NUP88-213ENST00000576862 KISS1Q15726 138 aa2.82□□□□□ -1.96
NUP88-213ENST00000576862 EBLN2Q6P2I7 272 aa2.82□□□□□ -1.96
NUP88-213ENST00000576862 SLC25A34Q6PIV7 304 aa2.82□□□□□ -1.96
NUP88-213ENST00000576862 AMTNQ6UX39 209 aa2.82□□□□□ -1.96
NUP88-213ENST00000576862 ZNF101Q8IZC7 436 aa2.82□□□□□ -1.96
NUP88-213ENST00000576862 TOMM5Q8N4H5 51 aa2.82□□□□□ -1.96
NUP88-213ENST00000576862 C10orf126Q8N4M7 172 aa2.82□□□□□ -1.96
NUP88-213ENST00000576862 CNEP1R1Q8N9A8 125 aa2.82□□□□□ -1.96
NUP88-213ENST00000576862 OR5H2Q8NGV7 314 aa2.82□□□□□ -1.96
NUP88-213ENST00000576862 SGMS2Q8NHU3 365 aa2.82□□□□□ -1.96
NUP88-213ENST00000576862 AQP3Q92482 292 aa2.82□□□□□ -1.96
NUP88-213ENST00000576862 GGTLC1Q9BX51 225 aa2.82□□□□□ -1.96
NUP88-213ENST00000576862 ZNF436Q9C0F3 470 aaPredicted RBP2.82□□□□□ -1.96
NUP88-213ENST00000576862 FGF23Q9GZV9 251 aaPredicted RBP2.82□□□□□ -1.96
NUP88-213ENST00000576862 BANF2Q9H503 90 aa2.82□□□□□ -1.96
NUP88-213ENST00000576862 OTORQ9NRC9 128 aa2.82□□□□□ -1.96
NUP88-213ENST00000576862 CACNA1AO00555 2505 aa2.82□□□□□ -1.96
NUP88-213ENST00000576862 SPTBN4Q9H254 2564 aa2.82□□□□□ -1.96
NUP88-213ENST00000576862 RP1L1Q8IWN7 2480 aaPredicted RBP2.81□□□□□ -1.96
NUP88-213ENST00000576862 DMXL1Q9Y485 3027 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 IGHV3-74A0A0B4J1X5 117 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 IGHV1-58A0A0C4DH39 117 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 IGKV1-12A0A0C4DH73 117 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 C7orf66A4D0T2 115 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 NAP1L6A6NFF2 107 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 COLCA2A8K830 154 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 IGLL5B9A064 214 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 SOCS1O15524 211 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 SNAPC5O75971 98 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 IGKV1D-12P01611 117 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 MT-ND4LP03901 98 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 CD3DP04234 171 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 TRAPPC2P0DI81 140 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 TRAPPC2BP0DI82 140 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 ZNF14P17017 642 aaPredicted RBP2.81□□□□□ -1.96
NUP88-213ENST00000576862 NFYBP25208 207 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 S100A2P29034 98 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 ZNF83P51522 516 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 TPPP2P59282 170 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 SSBP1Q04837 148 aaKnown RBP2.81□□□□□ -1.96
NUP88-213ENST00000576862 IGFBP7Q16270 282 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 PYY3Q5JQD4 70 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 MEIG1Q5JSS6 88 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 FOXI2Q6ZQN5 318 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 LCA10Q71F78 164 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 RNF182Q8N6D2 247 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 FER1L6-AS1Q8NA97 138 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 OR8A1Q8NGG7 326 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 FAM57AQ8TBR7 257 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 ARHGAP5-AS1Q96IT6 56 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 CBLN4Q9NTU7 201 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 ZNF492Q9P255 531 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 CPAMD8Q8IZJ3 1885 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 EXPH5Q8NEV8 1989 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 ACACAQ13085 2346 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 PIEZO2Q9H5I5 2752 aa2.81□□□□□ -1.96
NUP88-213ENST00000576862 PTPRQQ9UMZ3 2332 aa2.8□□□□□ -1.96
NUP88-213ENST00000576862 LOC102724200A0A096LPH7 203 aaPredicted RBP2.8□□□□□ -1.96
NUP88-213ENST00000576862 COX7A2LO14548 114 aa2.8□□□□□ -1.96
NUP88-213ENST00000576862 CST7O76096 145 aa2.8□□□□□ -1.96
NUP88-213ENST00000576862 NDUFB6O95139 128 aa2.8□□□□□ -1.96
NUP88-213ENST00000576862 MPC2O95563 127 aa2.8□□□□□ -1.96
NUP88-213ENST00000576862 IGLV2-8P01709 118 aa2.8□□□□□ -1.96
NUP88-213ENST00000576862 SRP19P09132 144 aaKnown RBP2.8□□□□□ -1.96
NUP88-213ENST00000576862 ZNF705DP0CH99 300 aaPredicted RBP2.8□□□□□ -1.96
NUP88-213ENST00000576862 FOXA3P55318 350 aaPredicted RBP2.8□□□□□ -1.96
NUP88-213ENST00000576862 OR2T2Q6IF00 324 aa2.8□□□□□ -1.96
NUP88-213ENST00000576862 SLC25A26Q70HW3 274 aa2.8□□□□□ -1.96
NUP88-213ENST00000576862 SSX8Q7RTT4 187 aa2.8□□□□□ -1.96
NUP88-213ENST00000576862 PHF5AQ7RTV0 110 aaKnown RBP2.8□□□□□ -1.96
NUP88-213ENST00000576862 TRAPPC6BQ86SZ2 158 aa2.8□□□□□ -1.96
NUP88-213ENST00000576862 LYPD1Q8N2G4 141 aa2.8□□□□□ -1.96
NUP88-213ENST00000576862 C3orf22Q8N5N4 141 aa2.8□□□□□ -1.96
NUP88-213ENST00000576862 C5orf17Q8NAS9 161 aa2.8□□□□□ -1.96
NUP88-213ENST00000576862 OR2T10Q8NGZ9 312 aa2.8□□□□□ -1.96
NUP88-213ENST00000576862 TIMM17AQ99595 171 aa2.8□□□□□ -1.96
NUP88-213ENST00000576862 MIEN1Q9BRT3 115 aa2.8□□□□□ -1.96
NUP88-213ENST00000576862 CST11Q9H112 138 aa2.8□□□□□ -1.96
NUP88-213ENST00000576862 MED13Q9UHV7 2174 aa2.8□□□□□ -1.96
NUP88-213ENST00000576862 DYSFO75923 2080 aa2.8□□□□□ -1.96
NUP88-213ENST00000576862 CELSR3Q9NYQ7 3312 aa2.8□□□□□ -1.96
NUP88-213ENST00000576862 PKD1L2Q7Z442 2459 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 CACNA1CQ13936 2221 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 TRAV41A0A0B4J266 112 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 IGHV1-18A0A0C4DH31 117 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 IGHV3-66A0A0C4DH42 116 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 A0A1B0GVX0 72 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 ZNF727A8MUV8 499 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 ZNF736B4DX44 427 aaPredicted RBP2.79□□□□□ -1.96
NUP88-213ENST00000576862 FNDC10F2Z333 226 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 C19orf84I3L1E1 186 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 M0R378 163 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 GEMIN2O14893 280 aaKnown RBP2.79□□□□□ -1.96
NUP88-213ENST00000576862 TAX1BP3O14907 124 aa2.79□□□□□ -1.96
NUP88-213ENST00000576862 CYB5AP00167 134 aa2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 122.6 ms