RNA–Protein interactions for RNA: ENST00000515144.5

TRIO-222, Transcript of trio Rho guanine nucleotide exchange factor, human

TSL 1 (best)

Gene TRIO, Length 7,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIO-222	ENST00000515144	TMEM126A	Q9H061	195 aa		11.31	□□□□□ -0.6
TRIO-222	ENST00000515144	HIST1H4A	P62805	103 aa	Known RBP	11.31	□□□□□ -0.6
TRIO-222	ENST00000515144	IGHV4-4	A0A075B6R2	117 aa		11.3	□□□□□ -0.6
TRIO-222	ENST00000515144		A0A087X0K7	114 aa		11.3	□□□□□ -0.6
TRIO-222	ENST00000515144	LINC00311	Q8N616	119 aa		11.3	□□□□□ -0.6
TRIO-222	ENST00000515144	HIST1H2BK	O60814	126 aa		11.3	□□□□□ -0.6
TRIO-222	ENST00000515144	HIST1H2BJ	P06899	126 aa		11.3	□□□□□ -0.6
TRIO-222	ENST00000515144	HIST1H2BO	P23527	126 aa		11.3	□□□□□ -0.6
TRIO-222	ENST00000515144	HIST1H2BB	P33778	126 aa		11.3	□□□□□ -0.6
TRIO-222	ENST00000515144	HIST1H2BD	P58876	126 aa		11.3	□□□□□ -0.6
TRIO-222	ENST00000515144	HIST1H2BC	P62807	126 aa		11.3	□□□□□ -0.6
TRIO-222	ENST00000515144	HIST2H2BE	Q16778	126 aa		11.3	□□□□□ -0.6
TRIO-222	ENST00000515144	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	11.3	□□□□□ -0.6
TRIO-222	ENST00000515144	HIST1H2BH	Q93079	126 aa		11.3	□□□□□ -0.6
TRIO-222	ENST00000515144	HIST1H2BN	Q99877	126 aa		11.3	□□□□□ -0.6
TRIO-222	ENST00000515144	HIST1H2BM	Q99879	126 aa		11.3	□□□□□ -0.6
TRIO-222	ENST00000515144	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	11.3	□□□□□ -0.6
TRIO-222	ENST00000515144	IGKV2-29	A2NJV5	120 aa	Predicted RBP	11.3	□□□□□ -0.6
TRIO-222	ENST00000515144	GYPE	P15421	78 aa		11.3	□□□□□ -0.6
TRIO-222	ENST00000515144	ANAPC10	Q9UM13	185 aa		11.3	□□□□□ -0.6
TRIO-222	ENST00000515144	ZNF48	Q96MX3	618 aa	Predicted RBP	11.3	□□□□□ -0.6
TRIO-222	ENST00000515144	SPINK8	P0C7L1	97 aa		11.29	□□□□□ -0.6
TRIO-222	ENST00000515144	ZFYVE26	Q68DK2	2539 aa		11.29	□□□□□ -0.6
TRIO-222	ENST00000515144	GHRH	P01286	108 aa		11.29	□□□□□ -0.6
TRIO-222	ENST00000515144	WIPF2	Q8TF74	440 aa	Predicted RBP	11.29	□□□□□ -0.6
TRIO-222	ENST00000515144	IGHV7-81	A0A0B4J1V7	117 aa		11.29	□□□□□ -0.6
TRIO-222	ENST00000515144	ESD	P10768	282 aa		11.29	□□□□□ -0.6
TRIO-222	ENST00000515144	DYNAP	Q8N1N2	210 aa		11.29	□□□□□ -0.6
TRIO-222	ENST00000515144	MRPL53	Q96EL3	112 aa	Known RBP	11.29	□□□□□ -0.6
TRIO-222	ENST00000515144	ZC2HC1A	Q96GY0	325 aa		11.29	□□□□□ -0.6
TRIO-222	ENST00000515144	CCL18	P55774	89 aa		11.29	□□□□□ -0.6
TRIO-222	ENST00000515144	RMI2	Q96E14	147 aa		11.29	□□□□□ -0.6
TRIO-222	ENST00000515144	RPL32	P62910	135 aa	Known RBP	11.29	□□□□□ -0.6
TRIO-222	ENST00000515144	GUSBP1	Q15486	140 aa		11.29	□□□□□ -0.6
TRIO-222	ENST00000515144	OR11H6	Q8NGC7	330 aa		11.29	□□□□□ -0.6
TRIO-222	ENST00000515144	TRAV8-3	A0A0A6YYJ7	113 aa		11.28	□□□□□ -0.6
TRIO-222	ENST00000515144	ETV2	O00321	342 aa	Predicted RBP	11.28	□□□□□ -0.6
TRIO-222	ENST00000515144	PLEKHB2	Q96CS7	222 aa		11.28	□□□□□ -0.6
TRIO-222	ENST00000515144	PRR25	Q96S07	402 aa		11.28	□□□□□ -0.6
TRIO-222	ENST00000515144	VOPP1	Q96AW1	172 aa		11.28	□□□□□ -0.6
TRIO-222	ENST00000515144	FNDC10	F2Z333	226 aa		11.28	□□□□□ -0.6
TRIO-222	ENST00000515144	LY6G5B	Q8NDX9	201 aa		11.28	□□□□□ -0.6
TRIO-222	ENST00000515144	MYMX	A0A1B0GTQ4	84 aa		11.28	□□□□□ -0.6
TRIO-222	ENST00000515144	DEFB1	P60022	68 aa		11.28	□□□□□ -0.6
TRIO-222	ENST00000515144	SEC11A	P67812	179 aa		11.28	□□□□□ -0.6
TRIO-222	ENST00000515144	C1orf194	Q5T5A4	169 aa		11.28	□□□□□ -0.6
TRIO-222	ENST00000515144	ORAOV1	Q8WV07	137 aa		11.28	□□□□□ -0.6
TRIO-222	ENST00000515144	SPAG8	Q99932	426 aa	Predicted RBP	11.28	□□□□□ -0.6
TRIO-222	ENST00000515144	LINC00587	B1AMM8	73 aa		11.27	□□□□□ -0.6
TRIO-222	ENST00000515144	FGF23	Q9GZV9	251 aa	Predicted RBP	11.27	□□□□□ -0.6
TRIO-222	ENST00000515144	FOXI2	Q6ZQN5	318 aa		11.27	□□□□□ -0.61
TRIO-222	ENST00000515144	STPG4	Q8N801	248 aa		11.27	□□□□□ -0.61
TRIO-222	ENST00000515144	CCDC168	Q8NDH2	2452 aa		11.27	□□□□□ -0.61
TRIO-222	ENST00000515144	RHOD	O00212	210 aa		11.27	□□□□□ -0.61
TRIO-222	ENST00000515144	BUB3	O43684	328 aa		11.27	□□□□□ -0.61
TRIO-222	ENST00000515144		A0A1B0GW64	132 aa		11.27	□□□□□ -0.61
TRIO-222	ENST00000515144	SDHAF1	A6NFY7	115 aa		11.27	□□□□□ -0.61
TRIO-222	ENST00000515144	SNHG12	Q9BXW3	62 aa		11.27	□□□□□ -0.61
TRIO-222	ENST00000515144	ANKHD1	Q8IWZ3	2542 aa	Known RBP	11.27	□□□□□ -0.61
TRIO-222	ENST00000515144	IGLC1	P0CG04	106 aa		11.27	□□□□□ -0.61
TRIO-222	ENST00000515144	CHAC1	Q9BUX1	264 aa		11.26	□□□□□ -0.61
TRIO-222	ENST00000515144	TRBV12-3	P01733	135 aa		11.26	□□□□□ -0.61
TRIO-222	ENST00000515144	SMPX	Q9UHP9	88 aa		11.26	□□□□□ -0.61
TRIO-222	ENST00000515144	SPART-AS1	P0CW21	52 aa		11.26	□□□□□ -0.61
TRIO-222	ENST00000515144	KLF5	Q13887	457 aa	Predicted RBP	11.26	□□□□□ -0.61
TRIO-222	ENST00000515144	SMAD5-AS1	Q9Y6J3	95 aa		11.26	□□□□□ -0.61
TRIO-222	ENST00000515144	LRRK2	Q5S007	2527 aa		11.26	□□□□□ -0.61
TRIO-222	ENST00000515144	IGHV1-24	A0A0C4DH33	117 aa		11.26	□□□□□ -0.61
TRIO-222	ENST00000515144	MRPL51	Q4U2R6	128 aa	Known RBP	11.26	□□□□□ -0.61
TRIO-222	ENST00000515144	GAGE2E	Q4V326	116 aa		11.25	□□□□□ -0.61
TRIO-222	ENST00000515144	PRSS57	Q6UWY2	283 aa		11.25	□□□□□ -0.61
TRIO-222	ENST00000515144	GAGE2D	Q9UEU5	116 aa		11.25	□□□□□ -0.61
TRIO-222	ENST00000515144	IGLC7	A0M8Q6	106 aa		11.25	□□□□□ -0.61
TRIO-222	ENST00000515144		Q8N9W7	124 aa		11.25	□□□□□ -0.61
TRIO-222	ENST00000515144	BRCA2	P51587	3418 aa		11.25	□□□□□ -0.61
TRIO-222	ENST00000515144	DEFB125	Q8N687	156 aa		11.25	□□□□□ -0.61
TRIO-222	ENST00000515144	IGHV4-31	P0DP07	118 aa		11.25	□□□□□ -0.61
TRIO-222	ENST00000515144	ADAMTSL5	Q6ZMM2	481 aa		11.25	□□□□□ -0.61
TRIO-222	ENST00000515144	ZNF491	Q8N8L2	437 aa		11.25	□□□□□ -0.61
TRIO-222	ENST00000515144	FAM110A	Q9BQ89	295 aa		11.25	□□□□□ -0.61
TRIO-222	ENST00000515144	LY6G6D	O95868	133 aa		11.24	□□□□□ -0.61
TRIO-222	ENST00000515144	TRAV8-4	A0A0B4J246	113 aa		11.24	□□□□□ -0.61
TRIO-222	ENST00000515144	DAZAP2	Q15038	168 aa	Predicted RBP	11.24	□□□□□ -0.61
TRIO-222	ENST00000515144	C2orf70	A6NJV1	201 aa		11.24	□□□□□ -0.61
TRIO-222	ENST00000515144	ATXN8	Q156A1	80 aa		11.24	□□□□□ -0.61
TRIO-222	ENST00000515144	MEGF9	Q9H1U4	602 aa		11.24	□□□□□ -0.61
TRIO-222	ENST00000515144	SAMD5	Q5TGI4	173 aa		11.23	□□□□□ -0.61
TRIO-222	ENST00000515144	FXYD5	Q96DB9	178 aa		11.23	□□□□□ -0.61
TRIO-222	ENST00000515144	SMR3A	Q99954	134 aa		11.23	□□□□□ -0.61
TRIO-222	ENST00000515144	C1orf43	Q9BWL3	253 aa		11.23	□□□□□ -0.61
TRIO-222	ENST00000515144	KLF12	Q9Y4X4	402 aa		11.23	□□□□□ -0.61
TRIO-222	ENST00000515144	C5orf38	Q86SI9	138 aa		11.23	□□□□□ -0.61
TRIO-222	ENST00000515144	TAL2	Q16559	108 aa		11.23	□□□□□ -0.61
TRIO-222	ENST00000515144	CFHR4	Q92496	578 aa		11.23	□□□□□ -0.61
TRIO-222	ENST00000515144	C5orf30	Q96GV9	206 aa		11.23	□□□□□ -0.61
TRIO-222	ENST00000515144	IGF2R	P11717	2491 aa		11.23	□□□□□ -0.61
TRIO-222	ENST00000515144	PLA2G2A	P14555	144 aa		11.22	□□□□□ -0.61
TRIO-222	ENST00000515144	RHOH	Q15669	191 aa		11.22	□□□□□ -0.61
TRIO-222	ENST00000515144	ZC2HC1B	Q5TFG8	222 aa		11.22	□□□□□ -0.61
TRIO-222	ENST00000515144	CLPSL1	A2RUU4	121 aa		11.22	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms