RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 C11orf87Q6NUJ2 197 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 Q6Q795 121 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 BCL6BQ8N143 479 aaPredicted RBP3.16□□□□□ -1.9
USH2A-202ENST00000366942 SIRPDQ9H106 197 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 KLK9Q9UKQ9 250 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 ITGB4P16144 1822 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 ZNF236Q9UL36 1845 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 PMS2P5A8MQ11 134 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 HLA-DRB4P13762 266 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 Q8N9W7 124 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 HLA-DRB4X5D2U9 266 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 FER1L6Q2WGJ9 1857 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 LRRC37AA6NMS7 1700 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 A0A0G2JRQ6 117 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 LGALS9BQ3B8N2 356 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 MBD3L1Q8WWY6 194 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 TMEM141Q96I45 108 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 EPG5Q9HCE0 2579 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 TRAV4A0A0B4J268 109 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 IGKV1-6A0A0C4DH72 117 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 E7EUB6 86 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 NIT1Q86X76 327 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 FUNDC1Q8IVP5 155 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 MED12Q93074 2177 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 ETV2O00321 342 aaPredicted RBP3.16□□□□□ -1.9
USH2A-202ENST00000366942 DEFB114Q30KQ6 69 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 ESM1Q9NQ30 184 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 NRXN2Q9P2S2 1712 aa3.16□□□□□ -1.9
USH2A-202ENST00000366942 IGHV4-28A0A0C4DH34 117 aa3.15□□□□□ -1.9
USH2A-202ENST00000366942 VGLL3A8MV65 326 aa3.15□□□□□ -1.9
USH2A-202ENST00000366942 CGAP01215 116 aa3.15□□□□□ -1.9
USH2A-202ENST00000366942 MP68P56378 58 aa3.15□□□□□ -1.9
USH2A-202ENST00000366942 CBLN2Q8IUK8 224 aa3.15□□□□□ -1.9
USH2A-202ENST00000366942 MDFIQ99750 246 aa3.15□□□□□ -1.9
USH2A-202ENST00000366942 SPANXA1Q9NS26 97 aa3.15□□□□□ -1.9
USH2A-202ENST00000366942 SCN3AQ9NY46 2000 aa3.15□□□□□ -1.9
USH2A-202ENST00000366942 CHD5Q8TDI0 1954 aa3.15□□□□□ -1.9
USH2A-202ENST00000366942 NMBP08949 121 aa3.15□□□□□ -1.9
USH2A-202ENST00000366942 ARMS2P0C7Q2 107 aa3.15□□□□□ -1.9
USH2A-202ENST00000366942 CACNA1SQ13698 1873 aa3.15□□□□□ -1.9
USH2A-202ENST00000366942 FAAP20Q6NZ36 180 aa3.15□□□□□ -1.9
USH2A-202ENST00000366942 TPSG1Q9NRR2 321 aa3.15□□□□□ -1.9
USH2A-202ENST00000366942 LRRC37A2A6NM11 1700 aa3.15□□□□□ -1.9
USH2A-202ENST00000366942 IGHV4-4A0A075B6R2 117 aa3.15□□□□□ -1.91
USH2A-202ENST00000366942 TRAV13-2A0A0B4J235 113 aa3.15□□□□□ -1.91
USH2A-202ENST00000366942 A0A0U1RRA0 63 aa3.15□□□□□ -1.91
USH2A-202ENST00000366942 LYPD6BQ8NI32 183 aa3.15□□□□□ -1.91
USH2A-202ENST00000366942 SMR3AQ99954 134 aa3.15□□□□□ -1.91
USH2A-202ENST00000366942 SSBP4Q9BWG4 385 aaPredicted RBP3.15□□□□□ -1.91
USH2A-202ENST00000366942 NPBQ8NG41 125 aa3.15□□□□□ -1.91
USH2A-202ENST00000366942 GFI1Q99684 422 aa3.15□□□□□ -1.91
USH2A-202ENST00000366942 SLC17A3O00476 420 aa3.15□□□□□ -1.91
USH2A-202ENST00000366942 MED14OSP0DP75 135 aa3.15□□□□□ -1.91
USH2A-202ENST00000366942 RPL23P62829 140 aaKnown RBP3.15□□□□□ -1.91
USH2A-202ENST00000366942 CDPF1Q6NVV7 123 aa3.15□□□□□ -1.91
USH2A-202ENST00000366942 SLC25A29Q8N8R3 303 aa3.15□□□□□ -1.91
USH2A-202ENST00000366942 DOCK6Q96HP0 2047 aa3.15□□□□□ -1.91
USH2A-202ENST00000366942 TRBV6-6A0A0A6YYG2 114 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 C19orf71A6NCJ1 209 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 MPC2O95563 127 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 PMCHL1Q16048 86 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 CLPSL2Q6UWE3 100 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 C14orf178Q8N769 122 aaPredicted RBP3.14□□□□□ -1.91
USH2A-202ENST00000366942 BBC3Q96PG8 261 aaPredicted RBP3.14□□□□□ -1.91
USH2A-202ENST00000366942 F8WDY8 70 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 NCR3O14931 201 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 IGLV2-8P01709 118 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 FOXG1P55316 489 aaPredicted RBP3.14□□□□□ -1.91
USH2A-202ENST00000366942 NANOS2P60321 138 aaKnown RBP3.14□□□□□ -1.91
USH2A-202ENST00000366942 C10orf55Q5SWW7 151 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 LELP1Q5T871 98 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 ZNF833PQ6ZTB9 187 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 SDHCQ99643 169 aaPredicted RBP3.14□□□□□ -1.91
USH2A-202ENST00000366942 GNB1LQ9BYB4 327 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 SPRY4Q9C004 299 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 Q9H8V8 135 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 MAP6D1Q9H9H5 199 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 CTSZQ9UBR2 303 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 MYH14Q7Z406 1995 aaKnown RBP3.14□□□□□ -1.91
USH2A-202ENST00000366942 TRACP01848 142 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 MARVELD1Q9BSK0 173 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 CCDC88CQ9P219 2028 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 A4D1N5 150 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 NDUFB4O95168 129 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 SEM1Q6ZVN7 128 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 GVQW1Q8N7I0 195 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 NRACQ8N912 160 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 RREB1Q92766 1687 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 CDK5RAP2Q96SN8 1893 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 IGLV4-69A0A075B6H9 119 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 TMEM170AQ8WVE7 144 aa3.14□□□□□ -1.91
USH2A-202ENST00000366942 H0Y9J4 135 aa3.13□□□□□ -1.91
USH2A-202ENST00000366942 DPM2O94777 84 aa3.13□□□□□ -1.91
USH2A-202ENST00000366942 ATP5L2Q7Z4Y8 100 aa3.13□□□□□ -1.91
USH2A-202ENST00000366942 BOD1L2Q8IYS8 172 aa3.13□□□□□ -1.91
USH2A-202ENST00000366942 DAND5Q8N907 189 aa3.13□□□□□ -1.91
USH2A-202ENST00000366942 TMEM75Q8N9X5 138 aa3.13□□□□□ -1.91
USH2A-202ENST00000366942 UBL5Q9BZL1 73 aa3.13□□□□□ -1.91
USH2A-202ENST00000366942 KDM3BQ7LBC6 1761 aa3.13□□□□□ -1.91
USH2A-202ENST00000366942 ZNF295-AS1Q8N0V1 137 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms