RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 IGHV3-33P01772 117 aa6.79□□□□□ -1.32
PTCD3-201ENST00000254630 IGHV3-30-3P0DP02 117 aa6.79□□□□□ -1.32
PTCD3-201ENST00000254630 IGHV3-30-5P0DP03 117 aa6.79□□□□□ -1.32
PTCD3-201ENST00000254630 UTF1Q5T230 341 aa6.79□□□□□ -1.32
PTCD3-201ENST00000254630 SLC25A29Q8N8R3 303 aa6.79□□□□□ -1.32
PTCD3-201ENST00000254630 Q8NFD4 153 aa6.79□□□□□ -1.32
PTCD3-201ENST00000254630 PRORYQ9H606 182 aa6.79□□□□□ -1.32
PTCD3-201ENST00000254630 ASCC3Q8N3C0 2202 aaKnown RBP6.79□□□□□ -1.32
PTCD3-201ENST00000254630 J3QQQ9 107 aa6.79□□□□□ -1.32
PTCD3-201ENST00000254630 PIFOQ8TCI5 191 aa6.79□□□□□ -1.32
PTCD3-201ENST00000254630 F8VRH5 84 aa6.78□□□□□ -1.32
PTCD3-201ENST00000254630 SPART-AS1P0CW21 52 aa6.78□□□□□ -1.32
PTCD3-201ENST00000254630 LENEPQ9Y5L5 61 aa6.78□□□□□ -1.32
PTCD3-201ENST00000254630 WI2-2373I1.2A0A1W2PRP0 233 aa6.78□□□□□ -1.32
PTCD3-201ENST00000254630 MORN5Q5VZ52 161 aa6.78□□□□□ -1.32
PTCD3-201ENST00000254630 DEFB105AQ8NG35 78 aa6.78□□□□□ -1.32
PTCD3-201ENST00000254630 LRRK1Q38SD2 2015 aa6.78□□□□□ -1.32
PTCD3-201ENST00000254630 Q8N9W7 124 aa6.78□□□□□ -1.32
PTCD3-201ENST00000254630 WIPF2Q8TF74 440 aaPredicted RBP6.78□□□□□ -1.32
PTCD3-201ENST00000254630 K7EMI3 77 aa6.78□□□□□ -1.32
PTCD3-201ENST00000254630 DAZ2Q13117 558 aaKnown RBP6.78□□□□□ -1.32
PTCD3-201ENST00000254630 DAZ4Q86SG3 579 aaKnown RBP6.78□□□□□ -1.32
PTCD3-201ENST00000254630 BOD1L2Q8IYS8 172 aa6.78□□□□□ -1.32
PTCD3-201ENST00000254630 DAZ3Q9NR90 486 aaKnown RBP6.78□□□□□ -1.32
PTCD3-201ENST00000254630 DENND4AQ7Z401 1863 aa6.78□□□□□ -1.32
PTCD3-201ENST00000254630 ZFP36P26651 326 aaKnown RBP6.78□□□□□ -1.32
PTCD3-201ENST00000254630 SH2D6Q7Z4S9 175 aa6.78□□□□□ -1.32
PTCD3-201ENST00000254630 C20orf144Q9BQM9 153 aa6.78□□□□□ -1.32
PTCD3-201ENST00000254630 DKK2Q9UBU2 259 aa6.78□□□□□ -1.32
PTCD3-201ENST00000254630 MPDZO75970 2070 aa6.78□□□□□ -1.32
PTCD3-201ENST00000254630 C1orf43Q9BWL3 253 aa6.77□□□□□ -1.33
PTCD3-201ENST00000254630 K7EIM0 57 aa6.77□□□□□ -1.33
PTCD3-201ENST00000254630 TIRAPP58753 221 aa6.77□□□□□ -1.33
PTCD3-201ENST00000254630 BLCAPP62952 87 aa6.77□□□□□ -1.33
PTCD3-201ENST00000254630 HERV-K104P63124 156 aa6.77□□□□□ -1.33
PTCD3-201ENST00000254630 SPANXA1Q9NS26 97 aa6.77□□□□□ -1.33
PTCD3-201ENST00000254630 A0A1W2PNU3 283 aaPredicted RBP6.77□□□□□ -1.33
PTCD3-201ENST00000254630 CCL18P55774 89 aa6.77□□□□□ -1.33
PTCD3-201ENST00000254630 COL4A3Q01955 1670 aa6.77□□□□□ -1.33
PTCD3-201ENST00000254630 MRPL23Q16540 153 aaKnown RBP6.77□□□□□ -1.33
PTCD3-201ENST00000254630 NUP210LQ5VU65 1888 aa6.77□□□□□ -1.33
PTCD3-201ENST00000254630 RPL39LQ96EH5 51 aaKnown RBP6.77□□□□□ -1.33
PTCD3-201ENST00000254630 C2orf70A6NJV1 201 aa6.77□□□□□ -1.33
PTCD3-201ENST00000254630 BUB3O43684 328 aa6.77□□□□□ -1.33
PTCD3-201ENST00000254630 IGHG4P01861 327 aa6.77□□□□□ -1.33
PTCD3-201ENST00000254630 MYCNOSP40205 109 aa6.77□□□□□ -1.33
PTCD3-201ENST00000254630 UBL5Q9BZL1 73 aa6.77□□□□□ -1.33
PTCD3-201ENST00000254630 PRO1854Q9UHT4 67 aa6.77□□□□□ -1.33
PTCD3-201ENST00000254630 ATP5G1P05496 136 aa6.76□□□□□ -1.33
PTCD3-201ENST00000254630 Q6ZSR3 168 aa6.76□□□□□ -1.33
PTCD3-201ENST00000254630 SEM1Q6ZVN7 128 aa6.76□□□□□ -1.33
PTCD3-201ENST00000254630 ATP6V0E2Q8NHE4 81 aa6.76□□□□□ -1.33
PTCD3-201ENST00000254630 CARD19Q96LW7 228 aa6.76□□□□□ -1.33
PTCD3-201ENST00000254630 GTSF1LQ9H1H1 148 aa6.76□□□□□ -1.33
PTCD3-201ENST00000254630 K7ERJ3 54 aa6.76□□□□□ -1.33
PTCD3-201ENST00000254630 SPRY2O43597 315 aa6.76□□□□□ -1.33
PTCD3-201ENST00000254630 K7EP34 96 aa6.76□□□□□ -1.33
PTCD3-201ENST00000254630 SIVA1O15304 175 aa6.76□□□□□ -1.33
PTCD3-201ENST00000254630 NDUFS5O43920 106 aa6.76□□□□□ -1.33
PTCD3-201ENST00000254630 CRYGCP07315 174 aa6.76□□□□□ -1.33
PTCD3-201ENST00000254630 Q8N7P7 452 aa6.76□□□□□ -1.33
PTCD3-201ENST00000254630 Q9H8V8 135 aa6.76□□□□□ -1.33
PTCD3-201ENST00000254630 SIRPDQ9H106 197 aa6.75□□□□□ -1.33
PTCD3-201ENST00000254630 TMEM89A2RUT3 159 aa6.75□□□□□ -1.33
PTCD3-201ENST00000254630 BVES-AS1Q5T3Y7 98 aa6.75□□□□□ -1.33
PTCD3-201ENST00000254630 MRPL36Q9P0J6 103 aaKnown RBP6.75□□□□□ -1.33
PTCD3-201ENST00000254630 PRSS47A8MTI9 375 aa6.75□□□□□ -1.33
PTCD3-201ENST00000254630 TEX22C9J3V5 150 aa6.75□□□□□ -1.33
PTCD3-201ENST00000254630 F8W1H4 67 aa6.75□□□□□ -1.33
PTCD3-201ENST00000254630 PHF3Q92576 2039 aaKnown RBP6.75□□□□□ -1.33
PTCD3-201ENST00000254630 DNAJC9-AS1A6NH13 148 aa6.74□□□□□ -1.33
PTCD3-201ENST00000254630 COX7A2LO14548 114 aa6.74□□□□□ -1.33
PTCD3-201ENST00000254630 CTSGP08311 255 aa6.74□□□□□ -1.33
PTCD3-201ENST00000254630 PPDPFLQ8WWR9 84 aa6.74□□□□□ -1.33
PTCD3-201ENST00000254630 ZNF503Q96F45 646 aa6.74□□□□□ -1.33
PTCD3-201ENST00000254630 CAMK2N2Q96S95 79 aa6.74□□□□□ -1.33
PTCD3-201ENST00000254630 A0A1W2PPM0 123 aa6.74□□□□□ -1.33
PTCD3-201ENST00000254630 IGLL1P15814 213 aa6.74□□□□□ -1.33
PTCD3-201ENST00000254630 ORMDL1Q9P0S3 153 aa6.74□□□□□ -1.33
PTCD3-201ENST00000254630 ODF3L1Q8IXM7 274 aa6.74□□□□□ -1.33
PTCD3-201ENST00000254630 KLK5Q9Y337 293 aaPredicted RBP6.74□□□□□ -1.33
PTCD3-201ENST00000254630 IGHV4-4A0A075B6R2 117 aa6.74□□□□□ -1.33
PTCD3-201ENST00000254630 hADV29S1A0JD25 119 aa6.74□□□□□ -1.33
PTCD3-201ENST00000254630 GATA1P15976 413 aaPredicted RBP6.74□□□□□ -1.33
PTCD3-201ENST00000254630 HAMPP81172 84 aa6.74□□□□□ -1.33
PTCD3-201ENST00000254630 COX7B2Q8TF08 81 aa6.74□□□□□ -1.33
PTCD3-201ENST00000254630 IGLC2P0DOY2 106 aa6.74□□□□□ -1.33
PTCD3-201ENST00000254630 IGLC3P0DOY3 106 aa6.74□□□□□ -1.33
PTCD3-201ENST00000254630 C9orf47Q6ZRZ4 202 aa6.74□□□□□ -1.33
PTCD3-201ENST00000254630 NCR3O14931 201 aa6.73□□□□□ -1.33
PTCD3-201ENST00000254630 ZNF124Q15973 351 aa6.73□□□□□ -1.33
PTCD3-201ENST00000254630 HHLA3Q9XRX5 114 aa6.73□□□□□ -1.33
PTCD3-201ENST00000254630 ETDCA0A1B0GVM5 59 aa6.73□□□□□ -1.33
PTCD3-201ENST00000254630 K7EMT4 169 aa6.73□□□□□ -1.33
PTCD3-201ENST00000254630 C15orf53Q8NAA6 179 aa6.73□□□□□ -1.33
PTCD3-201ENST00000254630 TINCRA0A1B0GVN0 87 aa6.73□□□□□ -1.33
PTCD3-201ENST00000254630 CLPSL1A2RUU4 121 aa6.73□□□□□ -1.33
PTCD3-201ENST00000254630 A6NDX4 124 aa6.73□□□□□ -1.33
PTCD3-201ENST00000254630 C5orf38Q86SI9 138 aa6.73□□□□□ -1.33
PTCD3-201ENST00000254630 NOTCH4Q99466 2003 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 871.3 ms