RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 MUC4Q99102 2169 aa4.91□□□□□ -1.62
VPS53-213ENST00000572334 IGKV3-7A0A075B6H7 116 aa4.9□□□□□ -1.63
VPS53-213ENST00000572334 LOC102723971A0A1B0GUV8 181 aa4.9□□□□□ -1.63
VPS53-213ENST00000572334 A0A1B0GV72 72 aa4.9□□□□□ -1.63
VPS53-213ENST00000572334 TOMM40O96008 361 aa4.9□□□□□ -1.63
VPS53-213ENST00000572334 IGKV1-5P01602 117 aa4.9□□□□□ -1.63
VPS53-213ENST00000572334 BCL2P10415 239 aa4.9□□□□□ -1.63
VPS53-213ENST00000572334 TFPI2P48307 235 aa4.9□□□□□ -1.63
VPS53-213ENST00000572334 PSMB3P49720 205 aa4.9□□□□□ -1.63
VPS53-213ENST00000572334 SMCPP49901 116 aaPredicted RBP4.9□□□□□ -1.63
VPS53-213ENST00000572334 HNRNPA3P51991 378 aaKnown RBP4.9□□□□□ -1.63
VPS53-213ENST00000572334 MFAP4P55083 255 aa4.9□□□□□ -1.63
VPS53-213ENST00000572334 UCP3P55916 312 aa4.9□□□□□ -1.63
VPS53-213ENST00000572334 SPINK9Q5DT21 86 aa4.9□□□□□ -1.63
VPS53-213ENST00000572334 ETFRF1Q6IPR1 90 aa4.9□□□□□ -1.63
VPS53-213ENST00000572334 PRR27Q6MZM9 219 aa4.9□□□□□ -1.63
VPS53-213ENST00000572334 TMEM182Q6ZP80 229 aaPredicted RBP4.9□□□□□ -1.63
VPS53-213ENST00000572334 LHFPL1Q86WI0 220 aa4.9□□□□□ -1.63
VPS53-213ENST00000572334 CMTM2Q8TAZ6 248 aa4.9□□□□□ -1.63
VPS53-213ENST00000572334 MRGPRFQ96AM1 343 aa4.9□□□□□ -1.63
VPS53-213ENST00000572334 TMEM56Q96MV1 263 aa4.9□□□□□ -1.63
VPS53-213ENST00000572334 TXN2Q99757 166 aa4.9□□□□□ -1.63
VPS53-213ENST00000572334 RARRES2Q99969 163 aa4.9□□□□□ -1.63
VPS53-213ENST00000572334 PSMG3Q9BT73 122 aaPredicted RBP4.9□□□□□ -1.63
VPS53-213ENST00000572334 SCRT1Q9BWW7 348 aa4.9□□□□□ -1.63
VPS53-213ENST00000572334 C11orf68Q9H3H3 251 aaKnown RBP4.9□□□□□ -1.63
VPS53-213ENST00000572334 KIAA1109Q2LD37 5005 aa4.9□□□□□ -1.63
VPS53-213ENST00000572334 PKD1P98161 4303 aa4.9□□□□□ -1.63
VPS53-213ENST00000572334 A0A0G2JRQ6 117 aa4.89□□□□□ -1.63
VPS53-213ENST00000572334 CRYM-AS1A6NIL9 109 aa4.89□□□□□ -1.63
VPS53-213ENST00000572334 INS-IGF2F8WCM5 200 aa4.89□□□□□ -1.63
VPS53-213ENST00000572334 DEFB4AO15263 64 aa4.89□□□□□ -1.63
VPS53-213ENST00000572334 SCGB1D2O95969 90 aa4.89□□□□□ -1.63
VPS53-213ENST00000572334 ESDP10768 282 aa4.89□□□□□ -1.63
VPS53-213ENST00000572334 HSPE1P61604 102 aaKnown RBP4.89□□□□□ -1.63
VPS53-213ENST00000572334 HBG1P69891 147 aa4.89□□□□□ -1.63
VPS53-213ENST00000572334 HBG2P69892 147 aa4.89□□□□□ -1.63
VPS53-213ENST00000572334 ICAM4Q14773 271 aa4.89□□□□□ -1.63
VPS53-213ENST00000572334 MLANAQ16655 118 aa4.89□□□□□ -1.63
VPS53-213ENST00000572334 BSXQ3C1V8 233 aa4.89□□□□□ -1.63
VPS53-213ENST00000572334 TCF24Q7RTU0 167 aa4.89□□□□□ -1.63
VPS53-213ENST00000572334 CYB561D1Q8N8Q1 229 aa4.89□□□□□ -1.63
VPS53-213ENST00000572334 Q8NAQ8 132 aa4.89□□□□□ -1.63
VPS53-213ENST00000572334 OR11H2Q8NH07 326 aa4.89□□□□□ -1.63
VPS53-213ENST00000572334 GATAD1Q8WUU5 269 aa4.89□□□□□ -1.63
VPS53-213ENST00000572334 RPUSD4Q96CM3 377 aaKnown RBP4.89□□□□□ -1.63
VPS53-213ENST00000572334 MS4A6AQ9H2W1 248 aa4.89□□□□□ -1.63
VPS53-213ENST00000572334 FNDC4Q9H6D8 234 aaPredicted RBP4.89□□□□□ -1.63
VPS53-213ENST00000572334 KLK5Q9Y337 293 aaPredicted RBP4.89□□□□□ -1.63
VPS53-213ENST00000572334 IGHV3-66A0A0C4DH42 116 aa4.88□□□□□ -1.63
VPS53-213ENST00000572334 J3QR89 54 aa4.88□□□□□ -1.63
VPS53-213ENST00000572334 TMEM50AO95807 157 aa4.88□□□□□ -1.63
VPS53-213ENST00000572334 MT-ND6P03923 174 aa4.88□□□□□ -1.63
VPS53-213ENST00000572334 OR5G3P0C626 314 aa4.88□□□□□ -1.63
VPS53-213ENST00000572334 RBMY1A1P0DJD3 496 aaKnown RBP4.88□□□□□ -1.63
VPS53-213ENST00000572334 RBMY1CP0DJD4 496 aa4.88□□□□□ -1.63
VPS53-213ENST00000572334 RNASE2P10153 161 aaKnown RBP4.88□□□□□ -1.63
VPS53-213ENST00000572334 PI3P19957 117 aa4.88□□□□□ -1.63
VPS53-213ENST00000572334 UCP1P25874 307 aa4.88□□□□□ -1.63
VPS53-213ENST00000572334 DEFB131AP59861 70 aa4.88□□□□□ -1.63
VPS53-213ENST00000572334 RBMY1FQ15415 496 aaKnown RBP4.88□□□□□ -1.63
VPS53-213ENST00000572334 LCE2CQ5TA81 110 aa4.88□□□□□ -1.63
VPS53-213ENST00000572334 GFI1BQ5VTD9 330 aa4.88□□□□□ -1.63
VPS53-213ENST00000572334 WDR73Q6P4I2 378 aa4.88□□□□□ -1.63
VPS53-213ENST00000572334 Q6ZRM9 215 aa4.88□□□□□ -1.63
VPS53-213ENST00000572334 GTF2H5Q6ZYL4 71 aa4.88□□□□□ -1.63
VPS53-213ENST00000572334 H2BFWTQ7Z2G1 175 aa4.88□□□□□ -1.63
VPS53-213ENST00000572334 FAM219AQ8IW50 185 aa4.88□□□□□ -1.63
VPS53-213ENST00000572334 TMEM217Q8N7C4 229 aa4.88□□□□□ -1.63
VPS53-213ENST00000572334 OR4A16Q8NH70 328 aa4.88□□□□□ -1.63
VPS53-213ENST00000572334 MBD3L1Q8WWY6 194 aa4.88□□□□□ -1.63
VPS53-213ENST00000572334 SMIM7Q9BQ49 75 aa4.88□□□□□ -1.63
VPS53-213ENST00000572334 SAMD10Q9BYL1 202 aa4.88□□□□□ -1.63
VPS53-213ENST00000572334 APLNQ9ULZ1 77 aa4.88□□□□□ -1.63
VPS53-213ENST00000572334 RPH3ALQ9UNE2 315 aa4.88□□□□□ -1.63
VPS53-213ENST00000572334 LAMTOR2Q9Y2Q5 125 aa4.88□□□□□ -1.63
VPS53-213ENST00000572334 TRAPPC1Q9Y5R8 145 aa4.88□□□□□ -1.63
VPS53-213ENST00000572334 COX11Q9Y6N1 276 aa4.88□□□□□ -1.63
VPS53-213ENST00000572334 NACAE9PAV3 2078 aa4.88□□□□□ -1.63
VPS53-213ENST00000572334 DYNC1H1Q14204 4646 aaKnown RBP4.87□□□□□ -1.63
VPS53-213ENST00000572334 DNAH11Q96DT5 4516 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 TRAV2A0A0B4J234 112 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 A6NJY4 79 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 TMEM238C9JI98 176 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 K7EQG2 157 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 PDE6DO43924 150 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 GNG7O60262 68 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 CA1P00915 261 aaPredicted RBP4.87□□□□□ -1.63
VPS53-213ENST00000572334 IGKV1-17P01599 117 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 PFN1P07737 140 aaKnown RBP4.87□□□□□ -1.63
VPS53-213ENST00000572334 SLC25A6P12236 298 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 CRYBB3P26998 211 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 NKX2-1P43699 371 aaPredicted RBP4.87□□□□□ -1.63
VPS53-213ENST00000572334 CMC4P56277 68 aaPredicted RBP4.87□□□□□ -1.63
VPS53-213ENST00000572334 ADIRFQ15847 76 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 BATFQ16520 125 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 PSG3Q16557 428 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 RNF151Q2KHN1 245 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 CDPF1Q6NVV7 123 aa4.87□□□□□ -1.63
VPS53-213ENST00000572334 TRPT1Q86TN4 253 aaKnown RBP4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 203.1 ms